mRNA_L-elsbetiae_contig18750.5488.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18750.5488.1
Unique NamemRNA_L-elsbetiae_contig18750.5488.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18750.5488.1 vs. uniprot
Match: D8LPZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPZ2_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.550e-18
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    4 LLRAIRNKYLWLAVSLMFYTFGISGGVFDIIRKPPPFMLNKDGTFGWFHPQ 156
            LLR IRNKYLWLA SL+ YTFGISGGV+DIIR P PFM+ +DG   WFHPQ
Sbjct:  237 LLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVKQDGFIMWFHPQ 287
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BLAST of mRNA_L-elsbetiae_contig18750.5488.1 vs. uniprot
Match: A0A485L545_9STRA (Aste57867_16045 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L545_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.350e-10
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   10 RAIRNKYLWLAVSLMFYTFGISGGVFDIIRKPPPFMLNKDGTFGWFHPQVR 162
            R +R K LWL +S++F+   +SG V+ IIR+PPPF   +DGT  W HPQ R
Sbjct:  212 RRLRRKQLWLVISILFFGLSVSGMVYCIIREPPPFAQERDGTLIWLHPQGR 262
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BLAST of mRNA_L-elsbetiae_contig18750.5488.1 vs. uniprot
Match: A0A0P1AWF5_PLAHL (Magnesium transporter protein 1-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWF5_PLAHL)

HSP 1 Score: 61.6 bits (148), Expect = 9.570e-10
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 VLLRAIRNKYLWLAVSLMFYTFGISGGVFDIIRKPPPFMLNKDGTFGWFHPQVR 162
            ++L  +R K LW+ VSL+FY   +SG V+ IIRKPPPF  ++ G   +FHPQ R
Sbjct:  232 LVLAKLRRKQLWMTVSLLFYGLSVSGMVYCIIRKPPPFASDRAGNIQYFHPQGR 285
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BLAST of mRNA_L-elsbetiae_contig18750.5488.1 vs. uniprot
Match: A0A836CB15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB15_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.270e-8
Identity = 24/41 (58.54%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 VLLRAIRNKYLWLAVSLMFYTFGISGGVFDIIRKPPPFMLN 123
            ++LR +R+  LWL VSL+ YTF ISG +FDIIR PPPF+++
Sbjct:  100 LVLRVVRSPTLWLVVSLLVYTFSISGAIFDIIRSPPPFVIS 140
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BLAST of mRNA_L-elsbetiae_contig18750.5488.1 vs. uniprot
Match: A0A7S2UY50_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY50_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.020e-8
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    4 LLRAIRNKYLWLAVSLMFYTFGISGGVFDIIRKPPPFMLN-KDGTFGWFHPQV 159
            ++  +RNK LWL VSL  YT  ISG ++DIIR P PF +N + G   +FHPQ 
Sbjct:  218 IINLLRNKMLWLLVSLGMYTCSISGMIYDIIRNPAPFFMNHQTGQIVFFHPQA 270
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18750.5488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LPZ2_ECTSI1.550e-1874.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A485L545_9STRA1.350e-1050.98Aste57867_16045 protein n=1 Tax=Aphanomyces stella... [more]
A0A0P1AWF5_PLAHL9.570e-1050.00Magnesium transporter protein 1-like n=1 Tax=Plasm... [more]
A0A836CB15_9STRA1.270e-858.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UY50_9STRA3.020e-850.94Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18750contigL-elsbetiae_contig18750:2630..2791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue4.9e-15
Seed eggNOG ortholog2880.D8LPZ2
Preferred nameOST3
KEGG koko:K12669,ko:K19478
KEGG TC9.A.45.1.1,9.A.45.1.2,9.A.45.1.3,9.A.45.1.4,9.A.45.1.6
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00072
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0003674,GO:0003824,GO:0004576,GO:0004579,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006464,GO:0006486,GO:0006487,GO:0006493,GO:0006807,GO:0008150,GO:0008152,GO:0008250,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009507,GO:0009536,GO:0009856,GO:0009987,GO:0010483,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0022414,GO:0031224,GO:0031984,GO:0032501,GO:0032991,GO:0034645,GO:0035268,GO:0035269,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0051703,GO:0051704,GO:0070085,GO:0071704,GO:0071944,GO:0097502,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.protein N-linked glycosylation via asparagine
EggNOG OGsKOG2603@1,KOG2603@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-15_001580.1
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815780.5981941-CDS-L-elsbetiae_contig18750:2629..27911622815780.5981941-CDS-L-elsbetiae_contig18750:2629..2791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18750 2630..2791 -
1691683097.9321558-CDS-L-elsbetiae_contig18750:2629..27911691683097.9321558-CDS-L-elsbetiae_contig18750:2629..2791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18750 2630..2791 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18750.5488.1prot_L-elsbetiae_contig18750.5488.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18750 2630..2791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18750.5488.1

>prot_L-elsbetiae_contig18750.5488.1 ID=prot_L-elsbetiae_contig18750.5488.1|Name=mRNA_L-elsbetiae_contig18750.5488.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=54bp
VLLRAIRNKYLWLAVSLMFYTFGISGGVFDIIRKPPPFMLNKDGTFGWFH
PQVR
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mRNA from alignment at L-elsbetiae_contig18750:2630..2791-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18750.5488.1 ID=mRNA_L-elsbetiae_contig18750.5488.1|Name=mRNA_L-elsbetiae_contig18750.5488.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=162bp|location=Sequence derived from alignment at L-elsbetiae_contig18750:2630..2791- (Laminarionema elsbetiae ELsaHSoW15)
GTTCTCCTCCGAGCGATCCGCAACAAGTACCTCTGGCTTGCCGTCTCTTT
GATGTTCTACACGTTCGGCATCAGCGGAGGCGTTTTCGACATAATCCGCA
AGCCGCCCCCGTTCATGTTGAACAAAGACGGGACCTTCGGGTGGTTCCAC
CCCCAGGTGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18750:2630..2791-

>mRNA_L-elsbetiae_contig18750.5488.1 ID=mRNA_L-elsbetiae_contig18750.5488.1|Name=mRNA_L-elsbetiae_contig18750.5488.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig18750:2630..2791- (Laminarionema elsbetiae ELsaHSoW15)
GTTCTCCTCCGAGCGATCCGCAACAAGTACCTCTGGCTTGCCGTCTCTTT
GATGTTCTACACGTTCGGCATCAGCGGAGGCGTTTTCGACATAATCCGCA
AGCCGCCCCCGTTCATGTTGAACAAAGACGGGACCTTCGGGTGGTTCCAC
CCCCAGGTGCGCGTTCTCCTCCGAGCGATCCGCAACAAGTACCTCTGGCT
TGCCGTCTCTTTGATGTTCTACACGTTCGGCATCAGCGGAGGCGTTTTCG
ACATAATCCGCAAGCCGCCCCCGTTCATGTTGAACAAAGACGGGACCTTC
GGGTGGTTCCACCCCCAGGTGCGC
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