mRNA_L-elsbetiae_contig1872.5477.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1872.5477.1
Unique NamemRNA_L-elsbetiae_contig1872.5477.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1872.5477.1 vs. uniprot
Match: A0A6H5JAN0_9PHAE (NYD-SP28 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAN0_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 1.030e-56
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 
Query:    1 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDMENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEFRRITKQYNDMQAKFRHFEISDNNRYEQV 318
            QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDMENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEFRRITKQYNDMQAKFRHFEISDNNRYEQV
Sbjct:  295 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDMENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEFRRITKQYNDMQAKFRHFEISDNNRYEQV 400
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BLAST of mRNA_L-elsbetiae_contig1872.5477.1 vs. uniprot
Match: A0A835Z4S9_9STRA (Sperm tail-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4S9_9STRA)

HSP 1 Score: 161 bits (408), Expect = 3.270e-44
Identity = 86/106 (81.13%), Postives = 96/106 (90.57%), Query Frame = 1 
Query:    1 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDMENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEFRRITKQYNDMQAKFRHFEISDNNRYEQV 318
            QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDMENSATL+HQKRKLTKLKDALS L  R+ ET+ RD++RNEELTEE+RR+T+ Y D+QAKFRHFE SDN RY+ V
Sbjct:  270 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDMENSATLAHQKRKLTKLKDALSALAARHAETEARDRRRNEELTEEYRRVTRHYRDLQAKFRHFEASDNARYDAV 375
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BLAST of mRNA_L-elsbetiae_contig1872.5477.1 vs. uniprot
Match: A0A7S3XMC1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMC1_HETAK)

HSP 1 Score: 131 bits (330), Expect = 5.360e-35
Identity = 70/102 (68.63%), Postives = 84/102 (82.35%), Query Frame = 1 
Query:    1 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDMENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEFRRITKQYNDMQAKFRHFEISDNNR 306
            QTL++QLEEMRATYQLNTEKLEYN+RVLTERD EN +TL+ QKR+  +LKDALS LV RY E D   ++RN+ELTE++R +TKQY D+QAKFRHFE  D  R
Sbjct:  185 QTLQEQLEEMRATYQLNTEKLEYNFRVLTERDNENKSTLAQQKRRQNRLKDALSALVHRYHEADATARRRNDELTEKYRLVTKQYRDLQAKFRHFEAQDTGR 286
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BLAST of mRNA_L-elsbetiae_contig1872.5477.1 vs. uniprot
Match: F0WFE3_9STRA (Uncharacterized protein AlNc14C82G5332 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WFE3_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.310e-33
Identity = 71/106 (66.98%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    1 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDMENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEFRRITKQYNDMQAKFRHFEISDNNRYEQV 318
            QTLEQQLE+MRA YQLNTEKLEYNYRVLTERDMENSATLS  KRKLT+ KD LS L  +Y +++TRD++ N++LTE+FRR TKQY D+Q K  HF + +  RY++V
Sbjct:  280 QTLEQQLEDMRAAYQLNTEKLEYNYRVLTERDMENSATLSQLKRKLTRFKDTLSTLRAKYNQSETRDRQNNQQLTEDFRRTTKQYRDLQKKHAHFLVIEGTRYKEV 385
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BLAST of mRNA_L-elsbetiae_contig1872.5477.1 vs. uniprot
Match: A0A024FY05_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FY05_9STRA)

HSP 1 Score: 127 bits (319), Expect = 5.730e-32
Identity = 70/106 (66.04%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    1 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDMENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEFRRITKQYNDMQAKFRHFEISDNNRYEQV 318
            QTLEQQLE+MRA YQLNTEKLEYNYRVLTERDMENSATLS  KRKLT+ K+ LS L  +Y +++TRD+++N+ LTEEFRR TKQY D+Q K+ HF   ++ R ++V
Sbjct:  281 QTLEQQLEDMRAAYQLNTEKLEYNYRVLTERDMENSATLSQLKRKLTRFKETLSLLRTKYNQSETRDRQQNQVLTEEFRRTTKQYRDLQKKYAHFVAIEDTRLKEV 386
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BLAST of mRNA_L-elsbetiae_contig1872.5477.1 vs. uniprot
Match: A0A0P1AXG6_PLAHL (Dynein regulatory complex protein 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AXG6_PLAHL)

HSP 1 Score: 124 bits (312), Expect = 5.340e-31
Identity = 66/106 (62.26%), Postives = 85/106 (80.19%), Query Frame = 1 
Query:    1 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDMENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEFRRITKQYNDMQAKFRHFEISDNNRYEQV 318
            QTLEQQLE+MRATYQLNTE       VLTERDMENSATL  QKRKL +LK+ L+ L+ +Y +TD RD++ N ELTEE++R+TKQY ++Q KF HFEIS NN+++++
Sbjct:  281 QTLEQQLEDMRATYQLNTEXXXXXXXVLTERDMENSATLGQQKRKLARLKETLATLITKYNQTDARDRRLNAELTEEYQRLTKQYRELQRKFAHFEISGNNKFDEI 386
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BLAST of mRNA_L-elsbetiae_contig1872.5477.1 vs. uniprot
Match: A0A7S3WX96_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WX96_9SPIT)

HSP 1 Score: 122 bits (306), Expect = 2.320e-30
Identity = 64/106 (60.38%), Postives = 84/106 (79.25%), Query Frame = 1 
Query:    1 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDMENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEFRRITKQYNDMQAKFRHFEISDNNRYEQV 318
            QTLEQQLEEMRATYQLN EKL+YNYRVL ERD EN+ T+  QK+KLT++ D LS L  +Y   + R K +N++LTEE++RIT+Q+ D+Q KF+HFE++D  RY +V
Sbjct:  194 QTLEQQLEEMRATYQLNQEKLDYNYRVLVERDAENANTIKQQKKKLTRMTDVLSALKAKYAREEKRYKSQNQDLTEEYKRITEQFKDLQNKFQHFEVADTKRYREV 299
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BLAST of mRNA_L-elsbetiae_contig1872.5477.1 vs. uniprot
Match: R1FCG6_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FCG6_EMIHU)

HSP 1 Score: 122 bits (306), Expect = 2.680e-30
Identity = 65/106 (61.32%), Postives = 83/106 (78.30%), Query Frame = 1 
Query:    1 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDMENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEFRRITKQYNDMQAKFRHFEISDNNRYEQV 318
            QTLE+QLEEMRATYQLN EKL+YNYRVL ERD EN+ T+ HQKRKLT++ D LS L  ++   + R K+ N ELTE+++R+T+Q+ D+QAKF+HFE SD  RY  V
Sbjct:  229 QTLEKQLEEMRATYQLNQEKLDYNYRVLVERDTENTTTIKHQKRKLTRMADVLSALRAKHAREEKRYKQENAELTEDYKRVTEQFKDLQAKFQHFEESDTRRYRDV 334
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BLAST of mRNA_L-elsbetiae_contig1872.5477.1 vs. uniprot
Match: A0A418B885_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B885_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.310e-29
Identity = 69/106 (65.09%), Postives = 83/106 (78.30%), Query Frame = 1 
Query:    1 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDMENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEFRRITKQYNDMQAKFRHFEISDNNRYEQV 318
            QTLEQQLEE          KLEYNYRVLTERDMENSATL+ QKRKL++LKDALSGL+Q+Y +TD + + +N ELTE++RRITKQY D+Q KF+HFE  D  +Y QV
Sbjct:  251 QTLEQQLEE----------KLEYNYRVLTERDMENSATLNQQKRKLSRLKDALSGLIQKYTQTDAQQRHQNTELTEDYRRITKQYKDLQKKFQHFEDHDGLKYSQV 346
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BLAST of mRNA_L-elsbetiae_contig1872.5477.1 vs. uniprot
Match: A0A7S0NBA1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0NBA1_9CRYP)

HSP 1 Score: 118 bits (296), Expect = 1.380e-29
Identity = 63/106 (59.43%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    1 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDMENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEFRRITKQYNDMQAKFRHFEISDNNRYEQV 318
            Q LEQQLE MR+TYQLNTEKLEYN+RVL+ERD EN++T+  QKRKL +L+D+LS LV +Y +TD + ++ N ELT+E+RRIT+Q+ D+Q K RHF+I+D  R +++
Sbjct:  284 QKLEQQLEVMRSTYQLNTEKLEYNFRVLSERDSENTSTIGQQKRKLARLQDSLSSLVAKYGKTDRQYRQENAELTDEYRRITEQFQDLQGKSRHFQIADAARVDEI 389
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1872.5477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAN0_9PHAE1.030e-56100.00NYD-SP28 domain-containing protein n=2 Tax=Ectocar... [more]
A0A835Z4S9_9STRA3.270e-4481.13Sperm tail-domain-containing protein n=1 Tax=Tribo... [more]
A0A7S3XMC1_HETAK5.360e-3568.63Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0WFE3_9STRA1.310e-3366.98Uncharacterized protein AlNc14C82G5332 n=1 Tax=Alb... [more]
A0A024FY05_9STRA5.730e-3266.04Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A0P1AXG6_PLAHL5.340e-3162.26Dynein regulatory complex protein 1 n=1 Tax=Plasmo... [more]
A0A7S3WX96_9SPIT2.320e-3060.38Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
R1FCG6_EMIHU2.680e-3061.32Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A418B885_9STRA1.310e-2965.09Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S0NBA1_9CRYP1.380e-2959.43Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1872contigL-elsbetiae_contig1872:21656..22406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.7
Seed ortholog evalue1.1e-44
Seed eggNOG ortholog2880.D8LIH6
Preferred nameDRC1
KEGG koko:K19754
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008150,GO:0009799,GO:0009855,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032501,GO:0032502,GO:0032838,GO:0034622,GO:0035082,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048731,GO:0048856,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0072359,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.cilium-dependent cell motility
EggNOG OGs2CMDT@1,2QQ2B@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons2
Model size318
Cds size291
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1872.5477.1prot_L-elsbetiae_contig1872.5477.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1872 21656..22379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815779.666807-CDS-L-elsbetiae_contig1872:21655..217991622815779.666807-CDS-L-elsbetiae_contig1872:21655..21799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1872 21656..21799 -
1691683097.2874596-CDS-L-elsbetiae_contig1872:21655..217991691683097.2874596-CDS-L-elsbetiae_contig1872:21655..21799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1872 21656..21799 -
1622815779.6808417-CDS-L-elsbetiae_contig1872:22232..223791622815779.6808417-CDS-L-elsbetiae_contig1872:22232..22379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1872 22233..22379 -
1691683097.2978554-CDS-L-elsbetiae_contig1872:22232..223791691683097.2978554-CDS-L-elsbetiae_contig1872:22232..22379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1872 22233..22379 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815779.6935139-UTR-L-elsbetiae_contig1872:22379..224061622815779.6935139-UTR-L-elsbetiae_contig1872:22379..22406Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1872 22380..22406 -
1691683097.3062313-UTR-L-elsbetiae_contig1872:22379..224061691683097.3062313-UTR-L-elsbetiae_contig1872:22379..22406Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1872 22380..22406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1872.5477.1

>prot_L-elsbetiae_contig1872.5477.1 ID=prot_L-elsbetiae_contig1872.5477.1|Name=mRNA_L-elsbetiae_contig1872.5477.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
MRATYQLNTEKLEYNYRVLTERDMENSATLSHQKRKLTKLKDALSGLVQR
YQETDTRDKKRNEELTEEFRRITKQYNDMQAKFRHFEISDNNRYEQV
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mRNA from alignment at L-elsbetiae_contig1872:21656..22406-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1872.5477.1 ID=mRNA_L-elsbetiae_contig1872.5477.1|Name=mRNA_L-elsbetiae_contig1872.5477.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=751bp|location=Sequence derived from alignment at L-elsbetiae_contig1872:21656..22406- (Laminarionema elsbetiae ELsaHSoW15)
CAGACGCTGGAGCAGCAGCTGGAGGAGATGCGTGCGACGTACCAGCTCAA
CACCGAGAAGCTCGAGTACAATTACCGCGTGCTGACAGAGAGGGACATGG
AGAACAGCGCCACTCTTTCCCACCAGAAGCGCAAGCTCACCAAGCTTAAG
GACGCCCTGTCGGGTCTCGTGCAGGTGTGGGGGGTACTCGGGGGTACTAC
TATCCGCAGTTCCCCAATACACCGACAAGCAGCATTGCTGACAGAGGCGC
TCACCCCGCCCCATATAATGCACTTGCTACACACCACAGCTGTTGTTGGC
TGTCGCGTTTCCAACCACTCTCGTTGCCAAGAAACCGATATTCGCTTTTG
TAGCCATGCACGCGTCGCGCGCTGGAGCACGGGAGGAAACAAGAAATACA
CCACCACACCACTCCTCCCGCCCTGTTTCGTTTGTTGTACGTCCATGTGT
ATAAAGCGAAAAAAGTAAGGGGCCGACGCTCGCTGAAATTCTACATATGT
GTGGCGCTCCTAAACATACAACTCTCACTCCGCCCACACACGCGCGTGTC
GACTGCTGCGCTTGCATCATATTCCTCTCGCGGATTGTGCTTGCCCTTTG
CCTGAAGCGTTACCAAGAGACCGACACTCGCGACAAGAAACGCAACGAGG
AGCTCACGGAGGAGTTCCGCCGCATCACCAAGCAGTACAACGACATGCAG
GCCAAGTTCCGGCACTTCGAGATCTCGGACAACAATCGCTACGAGCAGGT
A
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1872:21656..22406-

>mRNA_L-elsbetiae_contig1872.5477.1 ID=mRNA_L-elsbetiae_contig1872.5477.1|Name=mRNA_L-elsbetiae_contig1872.5477.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig1872:21656..22406- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTGCGACGTACCAGCTCAACACCGAGAAGCTCGAGTACAATTACCG
CGTGCTGACAGAGAGGGACATGGAGAACAGCGCCACTCTTTCCCACCAGA
AGCGCAAGCTCACCAAGCTTAAGGACGCCCTGTCGGGTCTCGTGCAGATG
CGTGCGACGTACCAGCTCAACACCGAGAAGCTCGAGTACAATTACCGCGT
GCTGACAGAGAGGGACATGGAGAACAGCGCCACTCTTTCCCACCAGAAGC
GCAAGCTCACCAAGCTTAAGGACGCCCTGTCGGGTCTCGTGCAGCGTTAC
CAAGAGACCGACACTCGCGACAAGAAACGCAACGAGGAGCTCACGGAGGA
GTTCCGCCGCATCACCAAGCAGTACAACGACATGCAGGCCAAGTTCCGGC
ACTTCGAGATCTCGGACAACAATCGCTACGAGCAGGTACGTTACCAAGAG
ACCGACACTCGCGACAAGAAACGCAACGAGGAGCTCACGGAGGAGTTCCG
CCGCATCACCAAGCAGTACAACGACATGCAGGCCAAGTTCCGGCACTTCG
AGATCTCGGACAACAATCGCTACGAGCAGGTA
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