mRNA_L-elsbetiae_contig18687.5463.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18687.5463.1
Unique NamemRNA_L-elsbetiae_contig18687.5463.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18687.5463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18687contigL-elsbetiae_contig18687:542..1066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.886974-CDS-L-elsbetiae_contig18687:541..6111622815777.886974-CDS-L-elsbetiae_contig18687:541..611Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18687 542..611 -
1691683095.9458468-CDS-L-elsbetiae_contig18687:541..6111691683095.9458468-CDS-L-elsbetiae_contig18687:541..611Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18687 542..611 -
1622815777.8965528-CDS-L-elsbetiae_contig18687:815..10661622815777.8965528-CDS-L-elsbetiae_contig18687:815..1066Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18687 816..1066 -
1691683095.9550412-CDS-L-elsbetiae_contig18687:815..10661691683095.9550412-CDS-L-elsbetiae_contig18687:815..1066Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18687 816..1066 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18687.5463.1prot_L-elsbetiae_contig18687.5463.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18687 542..1066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18687.5463.1

>prot_L-elsbetiae_contig18687.5463.1 ID=prot_L-elsbetiae_contig18687.5463.1|Name=mRNA_L-elsbetiae_contig18687.5463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
RKCNLVFGSEEGSIARVRSRVPPPGVGQQRARKVFVQTCIQDKTLSLTEY
AGFSATVCSLFFTAVTGVSKNLISSAMQLGGPGMRPRHAVDTAAQVLVAF
LLDLASR
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mRNA from alignment at L-elsbetiae_contig18687:542..1066-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18687.5463.1 ID=mRNA_L-elsbetiae_contig18687.5463.1|Name=mRNA_L-elsbetiae_contig18687.5463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=525bp|location=Sequence derived from alignment at L-elsbetiae_contig18687:542..1066- (Laminarionema elsbetiae ELsaHSoW15)
AGAAAGTGCAACCTCGTGTTCGGTTCGGAAGAGGGCTCCATTGCAAGGGT
CAGGTCCCGTGTCCCGCCGCCGGGCGTAGGTCAGCAGAGAGCCCGTAAGG
TCTTCGTTCAAACCTGCATACAAGACAAGACCCTCAGTCTCACTGAATAT
GCGGGGTTCAGCGCCACCGTGTGTTCCCTGTTTTTCACCGCCGTCACCGG
AGTCTCCAAAAATCTCATCTCTTCTGCGATGCAGCTCGGTGGCCCTGGCA
TGTAAGTTGTGGAAATAGAGCGCCACAGCTACCTGTGTGGGCTTGGTTTT
CTCTGGTTAATGCTGCATGGTTCACGTCGATACTACTACCGCAGACTATT
GCCTCGATGTAGGATTTTTTTGTCACCCATCTTGTATTCGTCCTCATAAC
GCACCCTTCGATCCACCCGCAAAAATCGGCTCTTGTTCGAATGCCTTTTC
GACAGGAGACCAAGACACGCCGTCGACACGGCCGCCCAAGTTTTAGTGGC
GTTTCTCTTGGACCTGGCCAGTCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18687:542..1066-

>mRNA_L-elsbetiae_contig18687.5463.1 ID=mRNA_L-elsbetiae_contig18687.5463.1|Name=mRNA_L-elsbetiae_contig18687.5463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig18687:542..1066- (Laminarionema elsbetiae ELsaHSoW15)
AGAAAGTGCAACCTCGTGTTCGGTTCGGAAGAGGGCTCCATTGCAAGGGT
CAGGTCCCGTGTCCCGCCGCCGGGCGTAGGTCAGCAGAGAGCCCGTAAGG
TCTTCGTTCAAACCTGCATACAAGACAAGACCCTCAGTCTCACTGAATAT
GCGGGGTTCAGCGCCACCGTGTGTTCCCTGTTTTTCACCGCCGTCACCGG
AGTCTCCAAAAATCTCATCTCTTCTGCGATGCAGCTCGGTGGCCCTGGCA
TAGAAAGTGCAACCTCGTGTTCGGTTCGGAAGAGGGCTCCATTGCAAGGG
TCAGGTCCCGTGTCCCGCCGCCGGGCGTAGGTCAGCAGAGAGCCCGTAAG
GTCTTCGTTCAAACCTGCATACAAGACAAGACCCTCAGTCTCACTGAATA
TGCGGGGTTCAGCGCCACCGTGTGTTCCCTGTTTTTCACCGCCGTCACCG
GAGTCTCCAAAAATCTCATCTCTTCTGCGATGCAGCTCGGTGGCCCTGGC
ATGAGACCAAGACACGCCGTCGACACGGCCGCCCAAGTTTTAGTGGCGTT
TCTCTTGGACCTGGCCAGTCGTGAGACCAAGACACGCCGTCGACACGGCC
GCCCAAGTTTTAGTGGCGTTTCTCTTGGACCTGGCCAGTCGT
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