mRNA_L-elsbetiae_contig18682.5462.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18682.5462.1
Unique NamemRNA_L-elsbetiae_contig18682.5462.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18682.5462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18682contigL-elsbetiae_contig18682:500..1104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size605
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18682.5462.1prot_L-elsbetiae_contig18682.5462.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18682 692..1081 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.8271391-UTR-L-elsbetiae_contig18682:499..6911622815777.8271391-UTR-L-elsbetiae_contig18682:499..691Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18682 500..691 +
1691683095.920082-UTR-L-elsbetiae_contig18682:499..6911691683095.920082-UTR-L-elsbetiae_contig18682:499..691Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18682 500..691 +
1622815777.855759-UTR-L-elsbetiae_contig18682:1081..11041622815777.855759-UTR-L-elsbetiae_contig18682:1081..1104Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18682 1082..1104 +
1691683095.9373548-UTR-L-elsbetiae_contig18682:1081..11041691683095.9373548-UTR-L-elsbetiae_contig18682:1081..1104Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18682 1082..1104 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.8434281-CDS-L-elsbetiae_contig18682:691..10811622815777.8434281-CDS-L-elsbetiae_contig18682:691..1081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18682 692..1081 +
1691683095.9290307-CDS-L-elsbetiae_contig18682:691..10811691683095.9290307-CDS-L-elsbetiae_contig18682:691..1081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18682 692..1081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18682.5462.1

>prot_L-elsbetiae_contig18682.5462.1 ID=prot_L-elsbetiae_contig18682.5462.1|Name=mRNA_L-elsbetiae_contig18682.5462.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
MRASAGHLLPRYPTTPSKHIVCFYRCCSRPDGGQPRGIMARALHTHLFRV
SVQFGDILNTWWWWFPGPSSCSHNTGCDQDQVGSGGRPTCLQEGRFVYFC
IHMNELLWLFFGGIIHRSDNRAVVATPKD*
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mRNA from alignment at L-elsbetiae_contig18682:500..1104+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18682.5462.1 ID=mRNA_L-elsbetiae_contig18682.5462.1|Name=mRNA_L-elsbetiae_contig18682.5462.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=605bp|location=Sequence derived from alignment at L-elsbetiae_contig18682:500..1104+ (Laminarionema elsbetiae ELsaHSoW15)
GGTATTGTGTTGCGAAGCCCCCTTTGTTTTTGGCTTGACCTCTCCACTCT
CTCGTGCTCTCTCTGGAGCACTGCGTTCCTAATACAAGTGATAAACCAAT
ATCTCCTTCTCAAGTAAAGGACATACTAAACAGCAGCTGATTGAAGGGCG
GGAGGAATAGCCTCCCGACTACCGTAGTTCCGCGTTTTTGATATGCGGGC
ATCCGCCGGGCATCTCTTACCCCGATACCCTACCACCCCTTCAAAACATA
TTGTTTGCTTCTACCGTTGCTGCTCTCGACCAGATGGCGGGCAGCCGCGA
GGGATCATGGCTCGTGCATTGCATACCCACCTCTTCCGGGTCAGCGTCCA
GTTTGGCGACATTCTAAACACCTGGTGGTGGTGGTTTCCTGGTCCATCTT
CCTGTTCACACAACACCGGCTGTGATCAAGATCAAGTAGGATCCGGCGGG
CGACCGACGTGCTTGCAAGAAGGCCGTTTCGTGTATTTTTGCATCCACAT
GAACGAGTTATTATGGCTATTTTTCGGTGGCATAATACATCGTTCAGACA
ATCGAGCCGTCGTTGCAACACCGAAGGATTAATGGCGCAGCAGGGTAGAG
ACGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18682:500..1104+

>mRNA_L-elsbetiae_contig18682.5462.1 ID=mRNA_L-elsbetiae_contig18682.5462.1|Name=mRNA_L-elsbetiae_contig18682.5462.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig18682:500..1104+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGCATCCGCCGGGCATCTCTTACCCCGATACCCTACCACCCCTTC
AAAACATATTGTTTGCTTCTACCGTTGCTGCTCTCGACCAGATGGCGGGC
AGCCGCGAGGGATCATGGCTCGTGCATTGCATACCCACCTCTTCCGGGTC
AGCGTCCAGTTTGGCGACATTCTAAACACCTGGTGGTGGTGGTTTCCTGG
TCCATCTTCCTGTTCACACAACACCGGCTGTGATCAAGATCAAGTAGGAT
CCGGCGGGCGACCGACGTGCTTGCAAGAAGGCCGTTTCGTGTATTTTTGC
ATCCACATGAACGAGTTATTATGGCTATTTTTCGGTGGCATAATACATCG
TTCAGACAATCGAGCCGTCGTTGCAACACCGAAGGATTAAATGCGGGCAT
CCGCCGGGCATCTCTTACCCCGATACCCTACCACCCCTTCAAAACATATT
GTTTGCTTCTACCGTTGCTGCTCTCGACCAGATGGCGGGCAGCCGCGAGG
GATCATGGCTCGTGCATTGCATACCCACCTCTTCCGGGTCAGCGTCCAGT
TTGGCGACATTCTAAACACCTGGTGGTGGTGGTTTCCTGGTCCATCTTCC
TGTTCACACAACACCGGCTGTGATCAAGATCAAGTAGGATCCGGCGGGCG
ACCGACGTGCTTGCAAGAAGGCCGTTTCGTGTATTTTTGCATCCACATGA
ACGAGTTATTATGGCTATTTTTCGGTGGCATAATACATCGTTCAGACAAT
CGAGCCGTCGTTGCAACACCGAAGGATTAA
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