mRNA_L-elsbetiae_contig18666.5458.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18666.5458.1
Unique NamemRNA_L-elsbetiae_contig18666.5458.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18666.5458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18666contigL-elsbetiae_contig18666:1684..2652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size278
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.1668477-CDS-L-elsbetiae_contig18666:1684..18721622815777.1668477-CDS-L-elsbetiae_contig18666:1684..1872Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18666 1685..1872 -
1691683095.4085243-CDS-L-elsbetiae_contig18666:1684..18721691683095.4085243-CDS-L-elsbetiae_contig18666:1684..1872Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18666 1685..1872 -
1622815777.1828752-CDS-L-elsbetiae_contig18666:2564..26521622815777.1828752-CDS-L-elsbetiae_contig18666:2564..2652Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18666 2565..2652 -
1691683095.420021-CDS-L-elsbetiae_contig18666:2564..26521691683095.420021-CDS-L-elsbetiae_contig18666:2564..2652Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18666 2565..2652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18666.5458.1prot_L-elsbetiae_contig18666.5458.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18666 1685..2652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18666.5458.1

>prot_L-elsbetiae_contig18666.5458.1 ID=prot_L-elsbetiae_contig18666.5458.1|Name=mRNA_L-elsbetiae_contig18666.5458.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
RGGGQTFCVRVEEEHEDEEEGGASGSSGRARWARDRRLGHPSARRSPDPG
ASADGEGGRSGGGEVGDSSGGGGGGRGVGGLCARGANISRRD
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mRNA from alignment at L-elsbetiae_contig18666:1684..2652-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18666.5458.1 ID=mRNA_L-elsbetiae_contig18666.5458.1|Name=mRNA_L-elsbetiae_contig18666.5458.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=969bp|location=Sequence derived from alignment at L-elsbetiae_contig18666:1684..2652- (Laminarionema elsbetiae ELsaHSoW15)
CGCGGTGGCGGCCAGACCTTCTGTGTTCGGGTGGAGGAGGAGCACGAGGA
CGAGGAAGAGGGAGGGGCGAGCGGGAGCAGCGGGCGAGGTGAGAGGCAGC
GCGCTTTTGCTGCTGAAGGCGGGCGCACCCTGGCCGCCGCCGCGTGCGCT
ACCGGATCCTCAGGTTCAGGAGGTGTCTCAACCCGATTGCCTGTGCAGGG
TTTTGTTGTGTTTGTTCTCGAAGCATTCATCCGCTCGCGATTTGTTTTTT
TAGTATGTACTTCTGTATACACATGGTACTTGCCTTTGTCGGCAGCTATT
GTAGCTGGCACTGTTTTTTTATTATTGTGTACTGGTACCATATAATTATA
TTAAAAAAAAAAGAAAAAATGTCAGCTGTCTACATACGTCCGGTTTGTAA
AAAAGTCTTCTTGGGGGTTTCAGGATGCGCAGGTATTTTTGCCCTTGCGC
CCCCTACATCGCCAAACGCGCCTGTTTACTCCGGGACTCACAATCACAAA
ACAATACTCAAATGCTCGAGATTTGCCATCATGCACACATATCTTTCCAT
CCCGCGATGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCTCACNNNNNNNNNNA
AAACAAACATCAAACCCATCGTTTCTTCCCTCCTCCCCCCACATCTTTCC
CTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCATGCGTCGCGTCG
CCTCTCTTATCTCTTTCCGCCCGCGTAAAGCACGTTGGGCTCGCGATCGC
CGCCTCGGCCACCCCTCAGCGCGTAGGTCGCCCGATCCCGGGGCGAGCGC
CGATGGTGAAGGCGGTCGGAGCGGCGGCGGTGAAGTCGGTGACAGCAGTG
GAGGCGGTGGCGGTGGTCGTGGTGTGGGTGGTTTATGCGCTCGCGGGGCG
AACATCAGCAGGCGAGATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18666:1684..2652-

>mRNA_L-elsbetiae_contig18666.5458.1 ID=mRNA_L-elsbetiae_contig18666.5458.1|Name=mRNA_L-elsbetiae_contig18666.5458.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig18666:1684..2652- (Laminarionema elsbetiae ELsaHSoW15)
CGCGGTGGCGGCCAGACCTTCTGTGTTCGGGTGGAGGAGGAGCACGAGGA
CGAGGAAGAGGGAGGGGCGAGCGGGAGCAGCGGGCGAGCGCGGTGGCGGC
CAGACCTTCTGTGTTCGGGTGGAGGAGGAGCACGAGGACGAGGAAGAGGG
AGGGGCGAGCGGGAGCAGCGGGCGAGCACGTTGGGCTCGCGATCGCCGCC
TCGGCCACCCCTCAGCGCGTAGGTCGCCCGATCCCGGGGCGAGCGCCGAT
GGTGAAGGCGGTCGGAGCGGCGGCGGTGAAGTCGGTGACAGCAGTGGAGG
CGGTGGCGGTGGTCGTGGTGTGGGTGGTTTATGCGCTCGCGGGGCGAACA
TCAGCAGGCGAGATCACGTTGGGCTCGCGATCGCCGCCTCGGCCACCCCT
CAGCGCGTAGGTCGCCCGATCCCGGGGCGAGCGCCGATGGTGAAGGCGGT
CGGAGCGGCGGCGGTGAAGTCGGTGACAGCAGTGGAGGCGGTGGCGGTGG
TCGTGGTGTGGGTGGTTTATGCGCTCGCGGGGCGAACATCAGCAGGCGAG
AT
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