mRNA_L-elsbetiae_contig1865.5455.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1865.5455.1
Unique NamemRNA_L-elsbetiae_contig1865.5455.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1865.5455.1 vs. uniprot
Match: D8LS50_ECTSI (Pc21g14270 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS50_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 2.440e-45
Identity = 79/133 (59.40%), Postives = 102/133 (76.69%), Query Frame = 1 
Query:    4 QEKRGNALSCALFSCIAVGGLILGSPPSSVEPYMATARGYLAGLEGLSDRSAVSCLIVYAMANEYLTGRGPGSEYRKSMDSAKATFEGLPHKKRDPIISAVLTHFMVLDGFPLLQHVETSC----SVNPVNSG 390
            +  RG ALSC+LFSC+A+GGLI G PP++V P+M TAR  +A   GLSDR AVS LI+YAMA+EY+ G+GPG+EY K M++A+A FEGLP K +DP++SAVL HFMVL+G PLL+ VET+     + N  NSG
Sbjct:  160 EAMRGQALSCSLFSCVALGGLISGCPPAAVAPHMTTARACVAKFGGLSDRYAVSALILYAMASEYVGGQGPGTEYAKGMEAARAIFEGLPAKDKDPVLSAVLAHFMVLEGLPLLRLVETNAPTTNAANRCNSG 292
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BLAST of mRNA_L-elsbetiae_contig1865.5455.1 vs. uniprot
Match: A0A6H5KVF7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF7_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 1.580e-44
Identity = 78/128 (60.94%), Postives = 101/128 (78.91%), Query Frame = 1 
Query:    4 QEKRGNALSCALFSCIAVGGLILGSPPSSVEPYMATARGYLAGLEGLSDRSAVSCLIVYAMANEYLTGRGPGSEYRKSMDSAKATFEGLPHKKRDPIISAVLTHFMVLDGFPLLQHVETSC-SVNPVN 384
            +  RG ALSC+LFSC+A+GGLI G PP++V P+M TAR  +A   GLSDR AVS LI+YAMA+EY+ G+GPG+EY K M++A+A FEGLP K +DP++SAVL HFMVL+G PLL+ VET+  + NP N
Sbjct:  160 EAMRGQALSCSLFSCVALGGLISGCPPAAVAPHMTTARACVAKFGGLSDRYAVSALILYAMASEYVGGQGPGTEYAKGMEAARAIFEGLPAKDKDPVLSAVLAHFMVLEGLPLLRLVETNAPTTNPAN 287
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1865.5455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS50_ECTSI2.440e-4559.40Pc21g14270 (Partial) (Fragment) n=1 Tax=Ectocarpus... [more]
A0A6H5KVF7_9PHAE1.580e-4460.94Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1865contigL-elsbetiae_contig1865:13388..14245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size536
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.9984863-CDS-L-elsbetiae_contig1865:13387..136011622815776.9984863-CDS-L-elsbetiae_contig1865:13387..13601Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1865 13388..13601 -
1691683095.2874346-CDS-L-elsbetiae_contig1865:13387..136011691683095.2874346-CDS-L-elsbetiae_contig1865:13387..13601Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1865 13388..13601 -
1622815777.0154486-CDS-L-elsbetiae_contig1865:13925..142451622815777.0154486-CDS-L-elsbetiae_contig1865:13925..14245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1865 13926..14245 -
1691683095.2957268-CDS-L-elsbetiae_contig1865:13925..142451691683095.2957268-CDS-L-elsbetiae_contig1865:13925..14245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1865 13926..14245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1865.5455.1prot_L-elsbetiae_contig1865.5455.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1865 13388..14245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1865.5455.1

>prot_L-elsbetiae_contig1865.5455.1 ID=prot_L-elsbetiae_contig1865.5455.1|Name=mRNA_L-elsbetiae_contig1865.5455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=178bp
PQEKRGNALSCALFSCIAVGGLILGSPPSSVEPYMATARGYLAGLEGLSD
RSAVSCLIVYAMANEYLTGRGPGSEYRKSMDSAKATFEGLPHKKRDPIIS
AVLTHFMVLDGFPLLQHVETSCSVNPVNSGRKRNGGGGGGGGGKKHTTSS
NSGNGTSAHTAADTRNDVDDEISSSSSS
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mRNA from alignment at L-elsbetiae_contig1865:13388..14245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1865.5455.1 ID=mRNA_L-elsbetiae_contig1865.5455.1|Name=mRNA_L-elsbetiae_contig1865.5455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig1865:13388..14245- (Laminarionema elsbetiae ELsaHSoW15)
CCGCAAGAGAAGAGGGGCAACGCGCTCTCGTGCGCGCTGTTCTCGTGTAT
CGCGGTCGGCGGCCTCATCCTGGGGTCCCCGCCGTCCTCCGTCGAGCCCT
ACATGGCGACCGCGCGGGGCTACCTCGCGGGGCTCGAGGGGCTCTCGGAC
CGGTCCGCGGTGTCCTGCCTCATCGTGTACGCGATGGCCAACGAGTACCT
GACGGGGCGGGGCCCGGGCTCCGAGTACCGAAAGAGCATGGACTCCGCCA
AGGCGACCTTCGAGGGGCTGCCGCACAAGAAGAGAGACCCCATCATATCG
GCGGTGCTGACCCACTTCATGTGCGTGTCTGTGTGGGAAGGAAGTTCAAG
CCTGTGTGATGATTTTTTTCAGTTGAGTTTTCACGTGTGCAGGCAGTCGG
AAGGCATATGTATATATATATATATTTGTTTTTGTTCAAGCGTTTGTGGT
TGTCGTCGTCCCACGATCTCATCCGGCGGCCAGCTACAGTATGTAGCTGA
TCAGGTCGAAACGTTTTTGGTGGGTGCGCAAAAGTCTGTTGTTGCTGGTG
CGCAGGCAGGGTTTGTGGTACATATTTTGGGCAGAAAAAACACGTTTTGA
ACGCCCCCCACGGCTGGTCTGTTTCTCTCGGAACGACTCGGCAGGGTGCT
GGACGGGTTTCCTCTGCTGCAGCACGTGGAGACGTCGTGCTCGGTCAACC
CCGTCAATAGCGGCAGGAAGAGAAACGGCGGCGGCGGCGGCGGCGGCGGT
GGCAAGAAACACACAACCAGCAGCAACAGCGGCAACGGTACCAGCGCGCA
CACCGCCGCCGACACCCGCAACGATGTCGACGACGAGATTTCCAGCAGCA
GCAGCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1865:13388..14245-

>mRNA_L-elsbetiae_contig1865.5455.1 ID=mRNA_L-elsbetiae_contig1865.5455.1|Name=mRNA_L-elsbetiae_contig1865.5455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1068bp|location=Sequence derived from alignment at L-elsbetiae_contig1865:13388..14245- (Laminarionema elsbetiae ELsaHSoW15)
CCGCAAGAGAAGAGGGGCAACGCGCTCTCGTGCGCGCTGTTCTCGTGTAT
CGCGGTCGGCGGCCTCATCCTGGGGTCCCCGCCGTCCTCCGTCGAGCCCT
ACATGGCGACCGCGCGGGGCTACCTCGCGGGGCTCGAGGGGCTCTCGGAC
CGGTCCGCGGTGTCCTGCCTCATCGTGTACGCGATGGCCAACGAGTACCT
GACGGGGCGGGGCCCGGGCTCCGAGTACCGAAAGAGCATGGACTCCGCCA
AGGCGACCTTCGAGGGGCTGCCGCACAAGAAGAGAGACCCCATCATATCG
GCGGTGCTGACCCACTTCATCCGCAAGAGAAGAGGGGCAACGCGCTCTCG
TGCGCGCTGTTCTCGTGTATCGCGGTCGGCGGCCTCATCCTGGGGTCCCC
GCCGTCCTCCGTCGAGCCCTACATGGCGACCGCGCGGGGCTACCTCGCGG
GGCTCGAGGGGCTCTCGGACCGGTCCGCGGTGTCCTGCCTCATCGTGTAC
GCGATGGCCAACGAGTACCTGACGGGGCGGGGCCCGGGCTCCGAGTACCG
AAAGAGCATGGACTCCGCCAAGGCGACCTTCGAGGGGCTGCCGCACAAGA
AGAGAGACCCCATCATATCGGCGGTGCTGACCCACTTCATGGTGCTGGAC
GGGTTTCCTCTGCTGCAGCACGTGGAGACGTCGTGCTCGGTCAACCCCGT
CAATAGCGGCAGGAAGAGAAACGGCGGCGGCGGCGGCGGCGGCGGTGGCA
AGAAACACACAACCAGCAGCAACAGCGGCAACGGTACCAGCGCGCACACC
GCCGCCGACACCCGCAACGATGTCGACGACGAGATTTCCAGCAGCAGCAG
CAGCGGTGCTGGACGGGTTTCCTCTGCTGCAGCACGTGGAGACGTCGTGC
TCGGTCAACCCCGTCAATAGCGGCAGGAAGAGAAACGGCGGCGGCGGCGG
CGGCGGCGGTGGCAAGAAACACACAACCAGCAGCAACAGCGGCAACGGTA
CCAGCGCGCACACCGCCGCCGACACCCGCAACGATGTCGACGACGAGATT
TCCAGCAGCAGCAGCAGC
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