mRNA_L-elsbetiae_contig1863.5447.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1863.5447.1 vs. uniprot
Match: D7FQQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ7_ECTSI) HSP 1 Score: 483 bits (1242), Expect = 6.410e-169 Identity = 264/336 (78.57%), Postives = 289/336 (86.01%), Query Frame = 1 Query: 1 MAPAGQRFNAVMEVLVHELLQERIIRARAPSSVSIASLRDSKGRRKRVGHQQGTVALDLPRSMGTTISKSVGDIAVATGTGTLSDISAGTIPKGSTHGSSLTAGGRSGSDSFVG---------ENATEPKERCKTSPLQGKMGVSRNALGVRAEGGREASRKHHTSSAKRSHGHPSPPKGNRASNAGGMLNKFQFSKDAMRRQQMSHESWIPDDLRMKMMRRSMAVIKENVYESVAQGSLVKKEKKRSSRSELEIVKTQEKFGTKHQRPCALCEQSFSEVNLVLAVPFKVCAFCSQLFHDPLGYRPTWEMELQSMRKQREQLAREKEREYWDPLRK 981 MAPAGQR AVMEVLV EL QERI+R+RAPSSVSIASLRDSKGRR++VG++ + +L+LPRS+G +SKSVGD+A AT TGT SDISAG+IPK S H S+L A G SGSDS G E A + KERCK SPLQGKMG SR LG R EGGRE RKHHTSSAKR HGH SP KGNRAS+AGG+LNKFQFSKDA+RRQQMSHESWIPDDLRMKM+RR MAVIKENV+ESVA GS+V+KEKKRSSRSELEIVKTQEKFGTKHQRPCALCEQSFSEVNLVLAVPFKVCAFCSQLFHDPLGYRPTW+ME+ MRK+REQLAREKEREYWDPLRK Sbjct: 1 MAPAGQRLTAVMEVLVRELAQERIVRSRAPSSVSIASLRDSKGRRRQVGNRHMSTSLELPRSLGANLSKSVGDVA-ATDTGTFSDISAGSIPKTSGHQSALKAEGGSGSDSPPGGRGGGSTMTEAAGDSKERCKMSPLQGKMGASRKNLGARTEGGREVPRKHHTSSAKRGHGHSSPLKGNRASSAGGVLNKFQFSKDAIRRQQMSHESWIPDDLRMKMVRRGMAVIKENVFESVAHGSVVRKEKKRSSRSELEIVKTQEKFGTKHQRPCALCEQSFSEVNLVLAVPFKVCAFCSQLFHDPLGYRPTWDMEVSRMRKKREQLAREKEREYWDPLRK 335
BLAST of mRNA_L-elsbetiae_contig1863.5447.1 vs. uniprot
Match: A0A836CGB7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGB7_9STRA) HSP 1 Score: 122 bits (307), Expect = 6.750e-28 Identity = 71/173 (41.04%), Postives = 99/173 (57.23%), Query Frame = 1 Query: 571 MRRQQMSHESWIPDDLRMKMMRRSMAVIKENVYESVAQGSLVKKEKKRSSRSELEIVKTQEKFGTKHQRPCALCEQSFSEVNLVLAVPFK-------------------------------------VCAFCSQLFHDPLGYRPTWEMELQSMRKQREQLAREKEREYWDPLR 978 +R+ Q+S ESWIP DLRMKM+RRS++ + ++V E+ A + K+ +++R+ LEI K QE+FG + RPCALCEQ FS VNLVLAVP+K VCAFCSQ F +P YRPT EM+ +++ + ++E+ YWDPLR Sbjct: 237 VRKPQLSQESWIPIDLRMKMLRRSISAVADSVSETAAWEKVRTKQAAKNARTSLEIAKEQERFGRECPRPCALCEQVFSSVNLVLAVPYKAIMDVREHWHEKAPHRLGPPKASHNMKRPPQCYNEVRVCAFCSQQFSEPATYRPTQEMKAAALKDAEAKEEADREKAYWDPLR 409
BLAST of mRNA_L-elsbetiae_contig1863.5447.1 vs. uniprot
Match: A0A7S2LA26_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LA26_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 1.160e-6 Identity = 44/146 (30.14%), Postives = 65/146 (44.52%), Query Frame = 1 Query: 589 SHESWIPDDLRMKMMRRSMAVIKENVYESVAQGSLVKKEKKRSSRSELEIVKTQEKFGTKHQRPCALCEQSFSEVNLVLAVPFK--------------------------------------VCAFCSQLFHDPLG-YRPTWEMEL 909 S ESWIP+DLR +M++R +V K N S +E +R LE +++EK+G + +R C LC++ NLVLAV K VC FC+QLF + YRP+W+ ++ Sbjct: 254 SRESWIPEDLRRRMLKREFSVAKMNYETREKCQSSNLRELQRCKSDALEKSRSKEKYGIEIKRNCGLCDRPHLSENLVLAVTLKACLDIRDSWGCKYDPEGSSRVRVNPNLRKAPACYNETRVCVFCAQLFDNQQEKYRPSWQAKV 399 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1863.5447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1863.5447.1 >prot_L-elsbetiae_contig1863.5447.1 ID=prot_L-elsbetiae_contig1863.5447.1|Name=mRNA_L-elsbetiae_contig1863.5447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=327bp MAPAGQRFNAVMEVLVHELLQERIIRARAPSSVSIASLRDSKGRRKRVGHback to top mRNA from alignment at L-elsbetiae_contig1863:14727..18149+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1863.5447.1 ID=mRNA_L-elsbetiae_contig1863.5447.1|Name=mRNA_L-elsbetiae_contig1863.5447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3423bp|location=Sequence derived from alignment at L-elsbetiae_contig1863:14727..18149+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1863:14727..18149+ >mRNA_L-elsbetiae_contig1863.5447.1 ID=mRNA_L-elsbetiae_contig1863.5447.1|Name=mRNA_L-elsbetiae_contig1863.5447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1962bp|location=Sequence derived from alignment at L-elsbetiae_contig1863:14727..18149+ (Laminarionema elsbetiae ELsaHSoW15)back to top |