mRNA_L-elsbetiae_contig18593.5431.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig18593.5431.1 vs. uniprot
Match: D8LF12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF12_ECTSI) HSP 1 Score: 206 bits (524), Expect = 2.470e-62 Identity = 112/155 (72.26%), Postives = 128/155 (82.58%), Query Frame = 1 Query: 1 QDLSAQLCKQLGATCDPAGWRTAWVIPTKAR----SATEMTAPRVASPNPAAAGRLEQRQTKAAGQLGMLGNEASDDVMNRRWGPLIVAALAYVAVGAWDWTDTVEALARELESGGPPLEAFASAVVISVLYVARHAYLYYGLARWLVEWEKKLF 453 QDL++QLCKQL AT D GWRTAWV+PT+AR +AT PR+AS + AAAGRLEQ Q + GQ+GMLG+E + D M RWGPL VAALAYVAVGAWDWTDTVEALARELE+GGPPLEAF SA+++ LYVARHAYLYYGLARWLV+WEKKLF Sbjct: 93 QDLTSQLCKQLDATQDITGWRTAWVVPTRARQKANAATSPVPPRMASAD-AAAGRLEQGQGQ--GQVGMLGDETNADGM-ARWGPLGVAALAYVAVGAWDWTDTVEALARELETGGPPLEAFGSALLVFTLYVARHAYLYYGLARWLVQWEKKLF 243
BLAST of mRNA_L-elsbetiae_contig18593.5431.1 vs. uniprot
Match: A0A6H5K168_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K168_9PHAE) HSP 1 Score: 202 bits (513), Expect = 2.150e-57 Identity = 112/155 (72.26%), Postives = 125/155 (80.65%), Query Frame = 1 Query: 1 QDLSAQLCKQLGATCDPAGWRTAWVIPTKAR----SATEMTAPRVASPNPAAAGRLEQRQTKAAGQLGMLGNEASDDVMNRRWGPLIVAALAYVAVGAWDWTDTVEALARELESGGPPLEAFASAVVISVLYVARHAYLYYGLARWLVEWEKKLF 453 QDL+ QLCKQL AT D AGWRTAWV+PTKAR +AT PR+AS + AAAGRLEQ Q GQ+GMLG+E + D M RWGPL VAALAYVAVGAWDWTDTVEALARELE+ G PLEAF SA+++ LYVARHAYLYYGLARWLV+WEKKLF Sbjct: 390 QDLTFQLCKQLDATQDIAGWRTAWVVPTKARQKANAATSPVPPRMASAD-AAAGRLEQAQ----GQVGMLGDETNADGM-ARWGPLGVAALAYVAVGAWDWTDTVEALARELETDGSPLEAFGSALLVFTLYVARHAYLYYGLARWLVQWEKKLF 538
BLAST of mRNA_L-elsbetiae_contig18593.5431.1 vs. uniprot
Match: A0A835ZAI6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI6_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.030e-10 Identity = 52/142 (36.62%), Postives = 66/142 (46.48%), Query Frame = 1 Query: 1 QDLSAQLCKQLGATCDPAGWRTAWVIPTKARSATEMTAPRVASPNPAAAGRLEQRQTKAAGQLGMLGNEASDDVMNRRWGPLIVAALAYVAVGAWDWTDTVEALARELESGGPPLEAFASAVVISVLYVARHAYLYYGLARW 426 +DL +L +LG W TAW IP +A + G A+++ RRW + AALAY AVGAWDW+DT ++ ELE G A A+A I LYV RH YLYYGLA+W Sbjct: 286 RDLQERLRGELGMDRVGVRWVTAWDIPIGPATANQ-------------------------------GRPAAEEA--RRWATVAGAALAYTAVGAWDWSDTFLHVSSELERGLSTDAAGAAAGAIG-LYVLRHVYLYYGLAKW 393
BLAST of mRNA_L-elsbetiae_contig18593.5431.1 vs. uniprot
Match: W7TQV4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQV4_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 3.010e-6 Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 1 Query: 265 YVAVGAWDWTDTVEALARELESGGPPLEAFASAVVIS----VLYVARHAYLYYGLARWLVEWEKKLF*NR 462 Y++VG DW+ T LA+++ A A + VLY+ RH Y+YYGL+RW+VEWEK+LF R Sbjct: 482 YLSVGGLDWSATFGGLAKDVSQHVATEGTAAEAPTVGWQEVVLYMLRHMYIYYGLSRWVVEWEKQLFEMR 551 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18593.5431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig18593.5431.1 >prot_L-elsbetiae_contig18593.5431.1 ID=prot_L-elsbetiae_contig18593.5431.1|Name=mRNA_L-elsbetiae_contig18593.5431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp MTAPRVASPNPAAAGRLEQRQTKAAGQLGMLGNEASDDVMNRRWGPLIVAback to top mRNA from alignment at L-elsbetiae_contig18593:240..2241+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig18593.5431.1 ID=mRNA_L-elsbetiae_contig18593.5431.1|Name=mRNA_L-elsbetiae_contig18593.5431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2002bp|location=Sequence derived from alignment at L-elsbetiae_contig18593:240..2241+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig18593:240..2241+ >mRNA_L-elsbetiae_contig18593.5431.1 ID=mRNA_L-elsbetiae_contig18593.5431.1|Name=mRNA_L-elsbetiae_contig18593.5431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig18593:240..2241+ (Laminarionema elsbetiae ELsaHSoW15)back to top |