mRNA_L-elsbetiae_contig18593.5431.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18593.5431.1
Unique NamemRNA_L-elsbetiae_contig18593.5431.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18593.5431.1 vs. uniprot
Match: D8LF12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF12_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 2.470e-62
Identity = 112/155 (72.26%), Postives = 128/155 (82.58%), Query Frame = 1 
Query:    1 QDLSAQLCKQLGATCDPAGWRTAWVIPTKAR----SATEMTAPRVASPNPAAAGRLEQRQTKAAGQLGMLGNEASDDVMNRRWGPLIVAALAYVAVGAWDWTDTVEALARELESGGPPLEAFASAVVISVLYVARHAYLYYGLARWLVEWEKKLF 453
            QDL++QLCKQL AT D  GWRTAWV+PT+AR    +AT    PR+AS + AAAGRLEQ Q +  GQ+GMLG+E + D M  RWGPL VAALAYVAVGAWDWTDTVEALARELE+GGPPLEAF SA+++  LYVARHAYLYYGLARWLV+WEKKLF
Sbjct:   93 QDLTSQLCKQLDATQDITGWRTAWVVPTRARQKANAATSPVPPRMASAD-AAAGRLEQGQGQ--GQVGMLGDETNADGM-ARWGPLGVAALAYVAVGAWDWTDTVEALARELETGGPPLEAFGSALLVFTLYVARHAYLYYGLARWLVQWEKKLF 243
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BLAST of mRNA_L-elsbetiae_contig18593.5431.1 vs. uniprot
Match: A0A6H5K168_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K168_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 2.150e-57
Identity = 112/155 (72.26%), Postives = 125/155 (80.65%), Query Frame = 1 
Query:    1 QDLSAQLCKQLGATCDPAGWRTAWVIPTKAR----SATEMTAPRVASPNPAAAGRLEQRQTKAAGQLGMLGNEASDDVMNRRWGPLIVAALAYVAVGAWDWTDTVEALARELESGGPPLEAFASAVVISVLYVARHAYLYYGLARWLVEWEKKLF 453
            QDL+ QLCKQL AT D AGWRTAWV+PTKAR    +AT    PR+AS + AAAGRLEQ Q    GQ+GMLG+E + D M  RWGPL VAALAYVAVGAWDWTDTVEALARELE+ G PLEAF SA+++  LYVARHAYLYYGLARWLV+WEKKLF
Sbjct:  390 QDLTFQLCKQLDATQDIAGWRTAWVVPTKARQKANAATSPVPPRMASAD-AAAGRLEQAQ----GQVGMLGDETNADGM-ARWGPLGVAALAYVAVGAWDWTDTVEALARELETDGSPLEAFGSALLVFTLYVARHAYLYYGLARWLVQWEKKLF 538
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BLAST of mRNA_L-elsbetiae_contig18593.5431.1 vs. uniprot
Match: A0A835ZAI6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI6_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.030e-10
Identity = 52/142 (36.62%), Postives = 66/142 (46.48%), Query Frame = 1 
Query:    1 QDLSAQLCKQLGATCDPAGWRTAWVIPTKARSATEMTAPRVASPNPAAAGRLEQRQTKAAGQLGMLGNEASDDVMNRRWGPLIVAALAYVAVGAWDWTDTVEALARELESGGPPLEAFASAVVISVLYVARHAYLYYGLARW 426
            +DL  +L  +LG       W TAW IP    +A +                               G  A+++   RRW  +  AALAY AVGAWDW+DT   ++ ELE G     A A+A  I  LYV RH YLYYGLA+W
Sbjct:  286 RDLQERLRGELGMDRVGVRWVTAWDIPIGPATANQ-------------------------------GRPAAEEA--RRWATVAGAALAYTAVGAWDWSDTFLHVSSELERGLSTDAAGAAAGAIG-LYVLRHVYLYYGLAKW 393
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BLAST of mRNA_L-elsbetiae_contig18593.5431.1 vs. uniprot
Match: W7TQV4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQV4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.010e-6
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:  265 YVAVGAWDWTDTVEALARELESGGPPLEAFASAVVIS----VLYVARHAYLYYGLARWLVEWEKKLF*NR 462
            Y++VG  DW+ T   LA+++          A A  +     VLY+ RH Y+YYGL+RW+VEWEK+LF  R
Sbjct:  482 YLSVGGLDWSATFGGLAKDVSQHVATEGTAAEAPTVGWQEVVLYMLRHMYIYYGLSRWVVEWEKQLFEMR 551
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18593.5431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LF12_ECTSI2.470e-6272.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K168_9PHAE2.150e-5772.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZAI6_9STRA1.030e-1036.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TQV4_9STRA3.010e-642.86Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18593contigL-elsbetiae_contig18593:240..2241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_006300.1
Exons3
Model size885
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18593.5431.1prot_L-elsbetiae_contig18593.5431.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18593 345..1812 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815774.843806-UTR-L-elsbetiae_contig18593:239..3441622815774.843806-UTR-L-elsbetiae_contig18593:239..344Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18593 240..344 +
1691683093.8578804-UTR-L-elsbetiae_contig18593:239..3441691683093.8578804-UTR-L-elsbetiae_contig18593:239..344Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18593 240..344 +
1622815774.8845716-UTR-L-elsbetiae_contig18593:1812..22411622815774.8845716-UTR-L-elsbetiae_contig18593:1812..2241Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18593 1813..2241 +
1691683093.9023073-UTR-L-elsbetiae_contig18593:1812..22411691683093.9023073-UTR-L-elsbetiae_contig18593:1812..2241Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18593 1813..2241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815774.8560581-CDS-L-elsbetiae_contig18593:344..3781622815774.8560581-CDS-L-elsbetiae_contig18593:344..378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18593 345..378 +
1691683093.8707597-CDS-L-elsbetiae_contig18593:344..3781691683093.8707597-CDS-L-elsbetiae_contig18593:344..378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18593 345..378 +
1622815774.866059-CDS-L-elsbetiae_contig18593:1011..11891622815774.866059-CDS-L-elsbetiae_contig18593:1011..1189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18593 1012..1189 +
1691683093.8825002-CDS-L-elsbetiae_contig18593:1011..11891691683093.8825002-CDS-L-elsbetiae_contig18593:1011..1189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18593 1012..1189 +
1622815774.8754148-CDS-L-elsbetiae_contig18593:1673..18121622815774.8754148-CDS-L-elsbetiae_contig18593:1673..1812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18593 1674..1812 +
1691683093.8930748-CDS-L-elsbetiae_contig18593:1673..18121691683093.8930748-CDS-L-elsbetiae_contig18593:1673..1812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18593 1674..1812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18593.5431.1

>prot_L-elsbetiae_contig18593.5431.1 ID=prot_L-elsbetiae_contig18593.5431.1|Name=mRNA_L-elsbetiae_contig18593.5431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MTAPRVASPNPAAAGRLEQRQTKAAGQLGMLGNEASDDVMNRRWGPLIVA
ALAYVAVGAWDWTDTVEALARELESGGPPLEAFASAVVISVLYVARHAYL
YYGLARWLVEWEKKLF*
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mRNA from alignment at L-elsbetiae_contig18593:240..2241+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18593.5431.1 ID=mRNA_L-elsbetiae_contig18593.5431.1|Name=mRNA_L-elsbetiae_contig18593.5431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2002bp|location=Sequence derived from alignment at L-elsbetiae_contig18593:240..2241+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGACTTGAGCGCTCAGCTGTGCAAACAGCTCGGCGCTACTTGTGACCC
TGCCGGGTGGAGAACCGCGTGGGTGATACCGACCAAAGCGAGATCAGCCA
CCGAAATGACTGCACCTCGTGTGGCATCGCCTAACCCAGGTTTGTGGGGG
CTGAATTGCTTCTCAATTGCCTCTTGTCTGCAACTTGTTTTTCTTTTTTC
TCTCGCTTCCGTCCCTGCCAGTGGATAGCGCTTAGCGTGTGTACAAAAAC
TTCGACCTCACCGTCGACGAGGGAAAGGGACGGCTGAACCCTTCTCGCGA
CAGAAATCTTGGGCGAGCACCGCAGAAGGGGGTAGTGGGGGCCTTGGGGG
AAAGGAACCCTTCTGTGTGACCACGGTTGAGTATTCTGGCAAGATATCCT
CGTGACAGGGGGGCCATCGAGCACTGGAAATAAATGTGAAGAAGAAAAAT
AAAGTGGTGTGCTTCGGCAATGTAGGGCTACTGGGCAATGATTCTACCGG
TCTTTAGTCGCGTCATGGCAGGTCATCCGTGTCGTGTTGGACTGTGCATA
GCTAGGCAAGAAGCCCATCGTTGCGCTCGGAGAACTGGCGATATATGTTT
GCAGTAATTGTACAACGCCTCGTCTTGAGCACACGCATGCCCGCCCTCTG
AACGGTGATCGTTTATCTGGCCTCTGTGCTTGGTCCTGAGATGCGATGCC
GTACGGGCATGTCATGTCACAGGCCCCTTTTCGTTTTTGACGCCACTCCA
TGACGATCGCCAGACACGGCAGCGGCGGCCGGAAGGTTGGAACAGAGGCA
GACGAAGGCCGCGGGTCAACTGGGCATGCTGGGAAACGAGGCGAGCGATG
ACGTCATGAATCGGCGATGGGGTCCGTTGATTGTGGCAGCACTGGCCTAC
GTTGCCGTCGGGGCGTGGGACTGGACGGACACCGTCGAGGCTCTGGCGAG
GTTAGTAACGTTTGCAGGCTTAGCGAGGTACCGTAGGTGACATCATATAG
TACACTCCCAAACAAACTCTACACACCGTGTGATATTTGTATTGGGCGCA
AAGTATGTAACCGAAAACTGAGTCGCTCTAGATCAAGTGGTAGGGGTGAT
TCAGATAGCACCCCCCTTACAGGATAACGCACCTAACCCTAAGTATTTTA
TGCTCCACCATCTTATCACCGGGGTGTGGTGTCTCATGCCACCTACGGCA
CTAGCGTCGTATCTTACCGTGTGCTAAACCTCAACGGAACGCGACTATCA
TTCTGGCGAAATTTGCGGCATATTTATACGGTACTTGTCGTGAAAGCTAG
CAACTGACAGACACCGGTAATGACTCGAGTATGGCGCTCTGTACTCTCTC
ACCGCATATGCCGCGCTCCATTCAGAAACTCTCGCTCTCCCTGTTTCTCC
TTCTCCTGCGCAACTCGTATTGCTACTACTGTAGGGAGCTAGAGAGCGGC
GGGCCACCGCTGGAAGCTTTTGCGTCAGCGGTGGTGATCTCTGTGCTGTA
CGTTGCCCGGCACGCCTATCTCTACTACGGGCTCGCGCGGTGGCTTGTTG
AGTGGGAGAAAAAACTCTTCTAAAACCGATGGGTTTTTAATGTTTCTTTT
GTCGGGGAGCATTGATGTTCATTCTTGGTTGATGGTCTAGCACTCGGCGT
GCAGTGTATACAATGTACCCTGATGTAATATGGGGCAGGATGGTAGCTAT
ATGCTTCCGTGGGGCTGGGGTTAGTGTTAGCCCTAAGGCTGTTGGTCTCT
TGGAGTGTAAATAAAGACTGAGGTGAGTTGATGCTTGCGCGCCGGGCAAG
GGCCGGAATTCATGCAGTGTATAATGTGAAGGTTATGTTTTTTGCTATGG
AGCTGAAGAGCGTTCGTTGTGTGGCATGAGCTCTTTGGGGAGAAAGGAAA
AGGGTAGATAAGGGCTGATCCAGCTGATCCAATGAAGTAGTGGGAAGAAA
AGACCAGCTAAACAAGTGGGCTGGCGGTGTAAACTGAATGGCGCAGCCAA
AC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18593:240..2241+

>mRNA_L-elsbetiae_contig18593.5431.1 ID=mRNA_L-elsbetiae_contig18593.5431.1|Name=mRNA_L-elsbetiae_contig18593.5431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig18593:240..2241+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACTGCACCTCGTGTGGCATCGCCTAACCCAGATGACTGCACCTCGTG
TGGCATCGCCTAACCCAGCGGCGGCCGGAAGGTTGGAACAGAGGCAGACG
AAGGCCGCGGGTCAACTGGGCATGCTGGGAAACGAGGCGAGCGATGACGT
CATGAATCGGCGATGGGGTCCGTTGATTGTGGCAGCACTGGCCTACGTTG
CCGTCGGGGCGTGGGACTGGACGGACACCGTCGAGGCTCTGGCGAGCGGC
GGCCGGAAGGTTGGAACAGAGGCAGACGAAGGCCGCGGGTCAACTGGGCA
TGCTGGGAAACGAGGCGAGCGATGACGTCATGAATCGGCGATGGGGTCCG
TTGATTGTGGCAGCACTGGCCTACGTTGCCGTCGGGGCGTGGGACTGGAC
GGACACCGTCGAGGCTCTGGCGAGGGAGCTAGAGAGCGGCGGGCCACCGC
TGGAAGCTTTTGCGTCAGCGGTGGTGATCTCTGTGCTGTACGTTGCCCGG
CACGCCTATCTCTACTACGGGCTCGCGCGGTGGCTTGTTGAGTGGGAGAA
AAAACTCTTCTAAGGAGCTAGAGAGCGGCGGGCCACCGCTGGAAGCTTTT
GCGTCAGCGGTGGTGATCTCTGTGCTGTACGTTGCCCGGCACGCCTATCT
CTACTACGGGCTCGCGCGGTGGCTTGTTGAGTGGGAGAAAAAACTCTTCT
AA
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