mRNA_L-elsbetiae_contig1859.5428.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1859.5428.1
Unique NamemRNA_L-elsbetiae_contig1859.5428.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1859.5428.1 vs. uniprot
Match: A0A841I5G9_9DEIO (Uncharacterized protein n=2 Tax=Deinobacterium chartae TaxID=521158 RepID=A0A841I5G9_9DEIO)

HSP 1 Score: 46.6 bits (109), Expect = 5.570e-5
Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:   28 LLLVAVAITVLGAWRYSGGEPMS----LPGDIRYESGGLSVHFPWVSCIFLSVFGNILMRALHG 207
            L+L+   + ++GA  Y     +S    LPGDIRY+SG ++V FP VS + +S+  N+L R   G
Sbjct:    6 LMLIGALLLLVGALWYFFPGALSWFGRLPGDIRYQSGNVTVFFPIVSLLIVSLLLNLLFRIFGG 69
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1859.5428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A841I5G9_9DEIO5.570e-539.06Uncharacterized protein n=2 Tax=Deinobacterium cha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1859contigL-elsbetiae_contig1859:1964..2203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionProtein of unknown function DUF2905
Ec32 orthologEc-17_003660.1
Exons1
Model size240
Cds size240
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815774.412036-CDS-L-elsbetiae_contig1859:1963..22031622815774.412036-CDS-L-elsbetiae_contig1859:1963..2203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1859 1964..2203 -
1691683093.520965-CDS-L-elsbetiae_contig1859:1963..22031691683093.520965-CDS-L-elsbetiae_contig1859:1963..2203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1859 1964..2203 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1859.5428.1prot_L-elsbetiae_contig1859.5428.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1859 1964..2203 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1859.5428.1

>prot_L-elsbetiae_contig1859.5428.1 ID=prot_L-elsbetiae_contig1859.5428.1|Name=mRNA_L-elsbetiae_contig1859.5428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
MLEPALRRPLLLVAVAITVLGAWRYSGGEPMSLPGDIRYESGGLSVHFPW
VSCIFLSVFGNILMRALHGGGARGRRTAW*
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mRNA from alignment at L-elsbetiae_contig1859:1964..2203-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1859.5428.1 ID=mRNA_L-elsbetiae_contig1859.5428.1|Name=mRNA_L-elsbetiae_contig1859.5428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=240bp|location=Sequence derived from alignment at L-elsbetiae_contig1859:1964..2203- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTGAACCAGCCTTGCGTCGGCCGTTGCTCCTGGTTGCCGTGGCCAT
CACTGTGCTCGGAGCGTGGAGATACTCTGGAGGGGAGCCCATGTCACTCC
CTGGCGATATCCGCTACGAAAGTGGCGGGCTCAGTGTGCACTTTCCGTGG
GTCTCGTGCATATTTTTGTCAGTGTTTGGGAATATTTTGATGCGGGCGTT
GCATGGAGGCGGGGCGCGCGGTCGCCGCACTGCTTGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1859:1964..2203-

>mRNA_L-elsbetiae_contig1859.5428.1 ID=mRNA_L-elsbetiae_contig1859.5428.1|Name=mRNA_L-elsbetiae_contig1859.5428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig1859:1964..2203- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTGAACCAGCCTTGCGTCGGCCGTTGCTCCTGGTTGCCGTGGCCAT
CACTGTGCTCGGAGCGTGGAGATACTCTGGAGGGGAGCCCATGTCACTCC
CTGGCGATATCCGCTACGAAAGTGGCGGGCTCAGTGTGCACTTTCCGTGG
GTCTCGTGCATATTTTTGTCAGTGTTTGGGAATATTTTGATGCGGGCGTT
GCATGGAGGCGGGGCGCGCGGTCGCCGCACTGCTTGGTAGATGCTTGAAC
CAGCCTTGCGTCGGCCGTTGCTCCTGGTTGCCGTGGCCATCACTGTGCTC
GGAGCGTGGAGATACTCTGGAGGGGAGCCCATGTCACTCCCTGGCGATAT
CCGCTACGAAAGTGGCGGGCTCAGTGTGCACTTTCCGTGGGTCTCGTGCA
TATTTTTGTCAGTGTTTGGGAATATTTTGATGCGGGCGTTGCATGGAGGC
GGGGCGCGCGGTCGCCGCACTGCTTGGTAG
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