mRNA_L-elsbetiae_contig18586.5426.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig18586.5426.1 vs. uniprot
Match: A0A6H5JTW4_9PHAE (Aldo_ket_red domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTW4_9PHAE) HSP 1 Score: 349 bits (895), Expect = 1.700e-113 Identity = 165/192 (85.94%), Postives = 182/192 (94.79%), Query Frame = 3 Query: 3 VMACHPLRAATPEGKFELVDDALRGGLPTDYMDVCREVLQHFNLEIPQGQEPTEEEEEIRQGCRFLQQLVQDMNAQLTTFTSLEHYEAELGGSITPMIADKFEALDEDSADLLQKFFDRYGKMVRYSCAQRVRDMVQTGEGCPSGSHSLSEADPLQVFALGWVMGRPGVGCTVVEMERPDHVEQAFSALRRE 578 VMACHPLRAATPEGKFELVDDALRGGLPTDYMDVCREVL HFNLEIP+ +EPTEEEEEIRQGCRFLQQLVQDMNAQLTTFTSLEHYEAELGGSITPMIADKFEALD+DSADLLQKFFDRYGKMVRYSCAQRVRDM TGEGCPSG+H L++++PLQ++AL W+MG PGVGCTVVEME+P+ V + F+ALR++ Sbjct: 255 VMACHPLRAATPEGKFELVDDALRGGLPTDYMDVCREVLHHFNLEIPEDREPTEEEEEIRQGCRFLQQLVQDMNAQLTTFTSLEHYEAELGGSITPMIADKFEALDDDSADLLQKFFDRYGKMVRYSCAQRVRDMATTGEGCPSGAHLLADSEPLQIYALRWLMGSPGVGCTVVEMEQPEKVAEGFAALRQD 446
BLAST of mRNA_L-elsbetiae_contig18586.5426.1 vs. uniprot
Match: D7G6R3_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R3_ECTSI) HSP 1 Score: 217 bits (553), Expect = 2.320e-60 Identity = 113/153 (73.86%), Postives = 120/153 (78.43%), Query Frame = 3 Query: 3 VMACHPLRAATPEGKFELVDDALRGGLPTDYMDVCREVLQHFNLEIPQGQEPTEEEEEIRQGCRFLQQLVQDMNAQLTTFTSLEHYEAELGGSITPMIADKFEALDEDSADLLQKFFDRYGKMV--------RYSCAQRVRDMVQTGEGCPSG 437 VMACHPLRAATPEGKFELVDDALRGGLP DYMDVCREVL HFNLEIP+ +EPTEEEEEIRQGCRFLQQLVQDMN QLT FTSLEHYEAELGGSITPMIADKFEALD+DSADLLQ+ + + R A R+MV G G Sbjct: 255 VMACHPLRAATPEGKFELVDDALRGGLPKDYMDVCREVLHHFNLEIPEDREPTEEEEEIRQGCRFLQQLVQDMNTQLTKFTSLEHYEAELGGSITPMIADKFEALDDDSADLLQERWPALASGICTLPVVPFRRGSASLTRNMVGGGNSNSGG 407
BLAST of mRNA_L-elsbetiae_contig18586.5426.1 vs. uniprot
Match: A0A7S2RKZ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKZ0_9STRA) HSP 1 Score: 157 bits (398), Expect = 6.090e-40 Identity = 85/196 (43.37%), Postives = 119/196 (60.71%), Query Frame = 3 Query: 3 VMACHPLRA--ATPEGKFELVDDALRGGL--PTDYMDVCREVLQHFNLEIPQGQEPTEEEEEIRQGCRFLQQLVQDMNAQLTTFTSLEHYEAELGGSITPMIADKFEALDEDSADLLQKFFDRYGKMVRYSCAQRVRDMVQTGEGCPSGSHSLSEADPLQVFALGWVMGRPGVGCTVVEMERPDHVEQAFSALRRE 578 V + PL A A+P ++ + D G P YM VC+E L F ++P ++PT +E E+ Q CR++Q L+QDMN QL F S+ +E EL SI PM+ DKFE LD DSA LLQ FF+++ MVRY CA +R V++ E CPSG+H L E + LQ AL WV+ +PG+ V+ + HV+QA + R+ Sbjct: 234 VGSTRPLTALLASPVQTWQRIADLAEDGSRPPEGYMQVCQEALDRFRFDLPTDRDPTPDEVELFQACRWIQTLIQDMNQQLVQFGSVAQFEQELKESILPMLNDKFEELDADSAALLQAFFEQFHAMVRYHCAVEMRKRVES-EACPSGAHHLGENESLQHRALSWVLEQPGIATVVLGVTASAHVDQALEIMARQ 428
BLAST of mRNA_L-elsbetiae_contig18586.5426.1 vs. uniprot
Match: A0A835ZBE8_9STRA (Aldo_ket_red domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBE8_9STRA) HSP 1 Score: 157 bits (398), Expect = 8.780e-40 Identity = 80/168 (47.62%), Postives = 105/168 (62.50%), Query Frame = 3 Query: 72 RGGLPTDYMDVCREVLQHFNLEIPQGQEPTEEEEEIRQGCRFLQQLVQDMNAQLTTFTSLEHYEAELGGSITPMIADKFEALDEDSADLLQKFFDRYGKMVRYSCAQRVRDMVQTGEGCPSGSHSLSEADPLQVFALGWVMGRPGVGCTVVEMERPDHVEQAFSALRR 575 RG P DYMDVCREV++HF P+G+EPT+EE E QGC+F+QQLVQDMN QL +F + EH + EL +I PMI KF+ LD S LQ F DRYG MV Y+CA+R+RD + P G + D +L W+ RP V +V M +P +V+ A + L+R Sbjct: 294 RGEPPQDYMDVCREVIEHFTYPPPEGREPTQEEIETMQGCQFMQQLVQDMNQQLGSFATYEHLQQELAHAIIPMINAKFDELDATSVKHLQAFLDRYGDMVTYNCAERLRDAILAAH--PDGGMEPAPGDTWAQHSLRWLQARPHVDTVLVGMHQPRYVQDALAVLQR 459
BLAST of mRNA_L-elsbetiae_contig18586.5426.1 vs. uniprot
Match: A0A7S2E258_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E258_9STRA) HSP 1 Score: 154 bits (389), Expect = 8.500e-39 Identity = 82/195 (42.05%), Postives = 116/195 (59.49%), Query Frame = 3 Query: 3 VMACHPLRAATPEGKFELVDDALRGGL-----PTDYMDVCREVLQHFNLEIPQGQEPTEEEEEIRQGCRFLQQLVQDMNAQLTTFTSLEHYEAELGGSITPMIADKFEALDEDSADLLQKFFDRYGKMVRYSCAQRVRDMVQTGEGCPSGSHSLSEADPLQVFALGWVMGRPGVGCTVVEMERPDHVEQAFSALR 572 VM+C PL P+ + L+ L PT Y++VC + L+HF+ E+P +P+ E+ E+ + CR+LQ L+QD+N QL F S+E Y+ EL G IT M+ KFEALDEDSA+LL FF +YG MVRY CA + R + T C SG HS+ PLQ FAL W + + G+ + M D V+ A + ++ Sbjct: 227 VMSCRPLTIIEPDNTADPAAPPLQRRLTSSPDPTGYLEVCAQALEHFHHEVPDSSQPSAEDIELVEACRWLQILIQDLNRQLPLFRSVEEYQRELVG-ITQMLEGKFEALDEDSAELLHTFFQKYGDMVRYHCAAQTRAFL-TSPLCSSGPHSIKPDTPLQHFALEWALKQSGIAHVSLGMTHEDQVDDALAIVK 419
BLAST of mRNA_L-elsbetiae_contig18586.5426.1 vs. uniprot
Match: A0A4D9CPH7_9STRA (Aldo_ket_red domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CPH7_9STRA) HSP 1 Score: 125 bits (314), Expect = 5.240e-28 Identity = 78/176 (44.32%), Postives = 98/176 (55.68%), Query Frame = 3 Query: 3 VMACHPLRAATPEGKFELVDDA-LRGGLPTDYMDVCREVLQHFN----LEIPQGQEPTEEEEEIRQGCRFLQQLVQDMNAQLTTFTSLEHYEAELGGSITPMIADKFEALDEDSADLLQKFFDRYGKMVRYSCAQRVRDMVQTGEGCPSGSHSLS-----EADPLQVFALGWVMGR 500 V A PL A + G + LV+ A L G P YM+ CR L+ FN E +E TEEE E R+GCR +Q L++DMN QLT+FTS E Y EL I PMIA FE+LDED+AD LQ FF +YG+MVRY A R E C + H L + L +AL W + + Sbjct: 265 VFANRPLTAVSQGGLYRLVNKAALSGEPPGGYMEACRTALEVFNPTSLFEGRAEKELTEEELETREGCRIIQDLIRDMNRQLTSFTSTETYTQELERRIIPMIASTFESLDEDAADALQAFFVKYGEMVRYHAAMRAV------EACKAAGHVLGGGVGKAGEALHEYALRWSLDK 434
BLAST of mRNA_L-elsbetiae_contig18586.5426.1 vs. uniprot
Match: A0A7S3V5K1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5K1_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.010e-16 Identity = 71/223 (31.84%), Postives = 111/223 (49.78%), Query Frame = 3 Query: 6 MACHPLRAATPEGKFELVD-------DALRGG-------LPTDYMDVCREVLQHFN----LEIP--QGQEPTEEEEEIRQGCRFLQQLVQDMNAQLTT-------FTSLEHYEAELGGSITPMIADKFEALDEDSADLLQKFFDRYGKMVRYSCAQRVRDMVQTG-EGCPSGSHSLSEADPLQVFALGWVM----------GR-PGVGCTVVEMERPDHVEQA 557 + C+P R F LVD D R G +P Y + E + HF+ LEI + +E T EE E GC+ LQ ++ D++A LT+ + S + YE +L + P+I D FE LDE S+DLLQ+FF +G VR+S A+ R ++++G +G + + + + PLQ FAL +++ GR P + V + +HV +A Sbjct: 340 LTCYPDRGTGSGLPFNLVDYLIPTSEDGSRMGWSHQIASMPLFYTTLLNETMAHFDATHLLEIKAEEERELTVEERETLDGCKLLQSMIHDLDANLTSVAGGSTQYRSFQAYENDLYTKVVPLIHDTFEELDEGSSDLLQRFFRAHGTAVRHSIARTTRALLKSGGDGGGAERYEIPDEVPLQEFALDFLLRQDCELAGISGRQPVIDRVVAGCSKAEHVVEA 562
BLAST of mRNA_L-elsbetiae_contig18586.5426.1 vs. uniprot
Match: A0A8J2SLW1_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SLW1_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 8.150e-16 Identity = 61/190 (32.11%), Postives = 93/190 (48.95%), Query Frame = 3 Query: 3 VMACHPLRAATPEGKFELVDDALRGGLPTDYMDVCREVLQHFNLEIPQGQEPTEEEEEIRQGCRFLQQLVQDMNAQLTTFTSLEHYEAELGGSITPMIADKFEALDEDSADLLQKFFDRYGKMVRYSCAQRVRDMVQTGEGCPSGSHSLSEADPLQVFALGWVMGRP--GVGCTVVEMERPDHVEQAFSA 566 ++ C PLR G F A Y+ + L HF E P G + ++ +GC +++QLV D+NA L F S E +E E+ + P++ KFEALDE SAD+LQ +F+ YG+ VR + RD C + + L + + L+ +AL + RP V V +E D + +A A Sbjct: 176 LLGCAPLRNLATGGVF--ASPAAGAADLAGYVPASQRALAHF--EAPAGADA-----DVVEGCAWVRQLVGDLNASLAQFDSFERWEHEIATQLVPLLHAKFEALDEASADVLQGYFEAYGRAVRANADLAARDAAAR---CAAAAAPLRDGERLEAWALRDALARPLARVSVGVRSVEDVDGLARALEA 353
BLAST of mRNA_L-elsbetiae_contig18586.5426.1 vs. uniprot
Match: A0A7S3K6F9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K6F9_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 2.400e-11 Identity = 59/192 (30.73%), Postives = 88/192 (45.83%), Query Frame = 3 Query: 3 VMACHPLRAATPEGKFELVDDAL-----RGGLPTDYMDVCREVLQHFNLEIPQGQEPTEEEEEIRQGCRFLQQLVQDMNAQLTTFTSLEHYEAELGGSITPMIADKFEALDEDSADLLQKFFDRYGKMVRYSCAQRVRDMVQTGEGCPSGSHSLSEADPLQVFALGWVMG-RPGVGCTVVEMERPDHVEQAF 560 ++ PL + TP +LVD RG Y C ++QH P + +E+ R G +L QLV D+N +T T +E EL I PMI +KF+ LD+ +ADLL KFF YGK+V + R + P+G + PL +AL V RP + + +E + ++ A Sbjct: 195 LVGIRPLLSTTPV-HMQLVDHPNTEGVDRGATQRAYFSACEAIVQHLTP-------PEDADEDTRAGADWLLQLVADLNESVTKMTP-SAWEYELSTQIGPMIHNKFDGLDDQTADLLFKFFQNYGKLVSITAQDCARAAAASP---PTGVLPIKPDQPLAEWALRHVFHQRPELTYISLAVESTNDIDVAL 374 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18586.5426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig18586.5426.1 >prot_L-elsbetiae_contig18586.5426.1 ID=prot_L-elsbetiae_contig18586.5426.1|Name=mRNA_L-elsbetiae_contig18586.5426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=194bp MACHPLRAATPEGKFELVDDALRGGLPTDYMDVCREVLQHFNLEIPQGQEback to top mRNA from alignment at L-elsbetiae_contig18586:383..2897- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig18586.5426.1 ID=mRNA_L-elsbetiae_contig18586.5426.1|Name=mRNA_L-elsbetiae_contig18586.5426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2515bp|location=Sequence derived from alignment at L-elsbetiae_contig18586:383..2897- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig18586:383..2897- >mRNA_L-elsbetiae_contig18586.5426.1 ID=mRNA_L-elsbetiae_contig18586.5426.1|Name=mRNA_L-elsbetiae_contig18586.5426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1164bp|location=Sequence derived from alignment at L-elsbetiae_contig18586:383..2897- (Laminarionema elsbetiae ELsaHSoW15)back to top |