mRNA_L-elsbetiae_contig18562.5420.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18562.5420.1
Unique NamemRNA_L-elsbetiae_contig18562.5420.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18562.5420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18562contigL-elsbetiae_contig18562:2611..2958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.5384264-CDS-L-elsbetiae_contig18562:2610..29581622815773.5384264-CDS-L-elsbetiae_contig18562:2610..2958Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18562 2611..2958 +
1691683092.9189591-CDS-L-elsbetiae_contig18562:2610..29581691683092.9189591-CDS-L-elsbetiae_contig18562:2610..2958Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18562 2611..2958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18562.5420.1prot_L-elsbetiae_contig18562.5420.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18562 2611..2958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18562.5420.1

>prot_L-elsbetiae_contig18562.5420.1 ID=prot_L-elsbetiae_contig18562.5420.1|Name=mRNA_L-elsbetiae_contig18562.5420.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
CCCSKRLALVVGHAHFFAFDPRHPAIEGDSPRLLQGSFYVCLVTGRTVYS
TPCRDHLPSTTARKIALARCGCHFADSRPTLESMEATVGTTPYLARCCAT
LPICLPNARTCPLPSL
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mRNA from alignment at L-elsbetiae_contig18562:2611..2958+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18562.5420.1 ID=mRNA_L-elsbetiae_contig18562.5420.1|Name=mRNA_L-elsbetiae_contig18562.5420.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=348bp|location=Sequence derived from alignment at L-elsbetiae_contig18562:2611..2958+ (Laminarionema elsbetiae ELsaHSoW15)
TGCTGCTGCTCCAAACGGCTCGCCTTGGTTGTCGGGCATGCCCACTTTTT
CGCCTTCGACCCGCGGCATCCTGCGATAGAGGGTGATTCTCCTCGTTTGC
TGCAAGGATCGTTTTACGTCTGTCTAGTGACAGGAAGGACTGTTTACAGC
ACCCCCTGTCGAGACCATTTGCCGAGTACCACTGCTCGGAAAATTGCGTT
GGCACGTTGTGGCTGCCATTTTGCCGATTCGCGCCCTACGCTCGAAAGCA
TGGAGGCCACGGTCGGAACAACCCCGTACCTTGCCAGGTGCTGCGCTACT
TTACCGATATGCTTGCCGAACGCTCGGACATGTCCACTGCCATCTCTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18562:2611..2958+

>mRNA_L-elsbetiae_contig18562.5420.1 ID=mRNA_L-elsbetiae_contig18562.5420.1|Name=mRNA_L-elsbetiae_contig18562.5420.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig18562:2611..2958+ (Laminarionema elsbetiae ELsaHSoW15)
TGCTGCTGCTCCAAACGGCTCGCCTTGGTTGTCGGGCATGCCCACTTTTT
CGCCTTCGACCCGCGGCATCCTGCGATAGAGGGTGATTCTCCTCGTTTGC
TGCAAGGATCGTTTTACGTCTGTCTAGTGACAGGAAGGACTGTTTACAGC
ACCCCCTGTCGAGACCATTTGCCGAGTACCACTGCTCGGAAAATTGCGTT
GGCACGTTGTGGCTGCCATTTTGCCGATTCGCGCCCTACGCTCGAAAGCA
TGGAGGCCACGGTCGGAACAACCCCGTACCTTGCCAGGTGCTGCGCTACT
TTACCGATATGCTTGCCGAACGCTCGGACATGTCCACTGCCATCTCTATG
CTGCTGCTCCAAACGGCTCGCCTTGGTTGTCGGGCATGCCCACTTTTTCG
CCTTCGACCCGCGGCATCCTGCGATAGAGGGTGATTCTCCTCGTTTGCTG
CAAGGATCGTTTTACGTCTGTCTAGTGACAGGAAGGACTGTTTACAGCAC
CCCCTGTCGAGACCATTTGCCGAGTACCACTGCTCGGAAAATTGCGTTGG
CACGTTGTGGCTGCCATTTTGCCGATTCGCGCCCTACGCTCGAAAGCATG
GAGGCCACGGTCGGAACAACCCCGTACCTTGCCAGGTGCTGCGCTACTTT
ACCGATATGCTTGCCGAACGCTCGGACATGTCCACTGCCATCTCTA
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