mRNA_L-elsbetiae_contig1856.5418.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1856.5418.1
Unique NamemRNA_L-elsbetiae_contig1856.5418.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1856.5418.1 vs. uniprot
Match: B5LWC4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWC4_9PHYC)

HSP 1 Score: 132 bits (333), Expect = 4.170e-37
Identity = 63/95 (66.32%), Postives = 78/95 (82.11%), Query Frame = 1 
Query:    1 MSKMIRSVQEIVNISESKSTPDRMAYKYLIRQVDKLLRSRALDQQYDAMFEVPAMVLFQPHFNRGFVAKKLVNHYRKRGFNCEMDLFTIKLEWAK 285
            MS +IRSV+EIV++SES  TPD+MAYKYL++QVD+LLR+RALDQQ+DA FEVPAMVLFQPHFNR  VA++L  HY   GF C+M  + + LEW K
Sbjct:    1 MSGIIRSVEEIVSLSESGRTPDKMAYKYLVQQVDRLLRARALDQQHDASFEVPAMVLFQPHFNREKVAQRLFKHYENIGFACKMSGYNVNLEWGK 95
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BLAST of mRNA_L-elsbetiae_contig1856.5418.1 vs. uniprot
Match: Q6XM08_9PHYC (FirrV-1-B28 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM08_9PHYC)

HSP 1 Score: 118 bits (296), Expect = 1.870e-31
Identity = 56/91 (61.54%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:   13 IRSVQEIVNISESKSTPDRMAYKYLIRQVDKLLRSRALDQQYDAMFEVPAMVLFQPHFNRGFVAKKLVNHYRKRGFNCEMDLFTIKLEWAK 285
            IRSV+EIV ISES  TPD+M Y+YLI+Q+D+L+RSRAL+Q+YDA FE+PA+V+F+PHFNR  VAKK+  HY K GF  E+  F  +L W K
Sbjct:    5 IRSVEEIVGISESGKTPDKMVYRYLIKQIDRLIRSRALEQRYDAHFEIPAIVMFKPHFNRLRVAKKICAHYTKIGFIVELTGFHARLAWGK 95
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BLAST of mRNA_L-elsbetiae_contig1856.5418.1 vs. uniprot
Match: Q8QNG8_ESV1K (EsV-1-110 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNG8_ESV1K)

HSP 1 Score: 67.8 bits (164), Expect = 1.310e-11
Identity = 33/92 (35.87%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:   13 IRSVQEIVNISESKSTPDRMAYKYLIRQVDKLLRSRALDQQYDAMFEVPAMVLFQPHFNRGFVAKKLVNHYRKRGFNC-EMDLFTIKLEWAK 285
            IRSV EI+N+S+S   P+++AYK L++ +D  +R RA  +     F++P ++  QP F+   V K +V+HY++ GF C  +    I ++W +
Sbjct:    3 IRSVDEIINLSDSSKNPEKLAYKDLVQHIDPRIRGRA-PRHSSLHFKIPGILWGQPVFDADRVEKMIVHHYKRMGFQCVRLAKREILIQWGE 93
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BLAST of mRNA_L-elsbetiae_contig1856.5418.1 vs. uniprot
Match: D8LPD9_ECTSI (EsV-1-110 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPD9_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 9.830e-11
Identity = 33/92 (35.87%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:   13 IRSVQEIVNISESKSTPDRMAYKYLIRQVDKLLRSRALDQQYDAMFEVPAMVLFQPHFNRGFVAKKLVNHYRKRGFNC-EMDLFTIKLEWAK 285
            IRSV EIVN+S+S   P+++A+K L++ +D  +R RA  +     F++P M+   P F+   V K +V+HY++ GF C  +    I ++W +
Sbjct:    3 IRSVDEIVNLSDSSKNPEKLAFKDLVQHIDPRIRVRA-PRHNSLHFKIPGMLWGHPVFDADRVEKMIVHHYKRMGFQCARLAKREILIQWGE 93
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1856.5418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
B5LWC4_9PHYC4.170e-3766.32Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM08_9PHYC1.870e-3161.54FirrV-1-B28 n=1 Tax=Feldmannia irregularis virus a... [more]
Q8QNG8_ESV1K1.310e-1135.87EsV-1-110 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPD9_ECTSI9.830e-1135.87EsV-1-110 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1856contigL-elsbetiae_contig1856:21860..22234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-110
Ec32 orthologEc-06_005720.1
Exons1
Model size375
Cds size375
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.440804-CDS-L-elsbetiae_contig1856:21859..222341622815773.440804-CDS-L-elsbetiae_contig1856:21859..22234Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 21860..22234 +
1691683092.8762186-CDS-L-elsbetiae_contig1856:21859..222341691683092.8762186-CDS-L-elsbetiae_contig1856:21859..22234Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 21860..22234 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1856.5418.1prot_L-elsbetiae_contig1856.5418.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1856 21860..22234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1856.5418.1

>prot_L-elsbetiae_contig1856.5418.1 ID=prot_L-elsbetiae_contig1856.5418.1|Name=mRNA_L-elsbetiae_contig1856.5418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
MSKMIRSVQEIVNISESKSTPDRMAYKYLIRQVDKLLRSRALDQQYDAMF
EVPAMVLFQPHFNRGFVAKKLVNHYRKRGFNCEMDLFTIKLEWAKLDSGN
DDADDENVSEPESNSEDDDRLPPQE
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mRNA from alignment at L-elsbetiae_contig1856:21860..22234+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1856.5418.1 ID=mRNA_L-elsbetiae_contig1856.5418.1|Name=mRNA_L-elsbetiae_contig1856.5418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=375bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:21860..22234+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCAAAATGATACGTTCCGTTCAGGAGATTGTGAATATATCGGAATC
GAAAAGTACGCCCGACAGAATGGCGTATAAATACCTTATCAGACAGGTAG
ACAAGTTACTGCGTTCAAGGGCTCTAGACCAACAATACGATGCAATGTTT
GAGGTGCCGGCGATGGTTCTTTTTCAACCACACTTCAACAGGGGTTTCGT
CGCGAAAAAACTAGTAAATCATTATCGCAAGAGAGGCTTCAATTGTGAAA
TGGATCTGTTCACAATAAAGTTGGAGTGGGCAAAACTGGATTCGGGGAAT
GATGATGCTGACGACGAGAATGTTTCTGAACCTGAATCTAATTCAGAAGA
TGATGACCGTCTACCACCGCAAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1856:21860..22234+

>mRNA_L-elsbetiae_contig1856.5418.1 ID=mRNA_L-elsbetiae_contig1856.5418.1|Name=mRNA_L-elsbetiae_contig1856.5418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:21860..22234+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCAAAATGATACGTTCCGTTCAGGAGATTGTGAATATATCGGAATC
GAAAAGTACGCCCGACAGAATGGCGTATAAATACCTTATCAGACAGGTAG
ACAAGTTACTGCGTTCAAGGGCTCTAGACCAACAATACGATGCAATGTTT
GAGGTGCCGGCGATGGTTCTTTTTCAACCACACTTCAACAGGGGTTTCGT
CGCGAAAAAACTAGTAAATCATTATCGCAAGAGAGGCTTCAATTGTGAAA
TGGATCTGTTCACAATAAAGTTGGAGTGGGCAAAACTGGATTCGGGGAAT
GATGATGCTGACGACGAGAATGTTTCTGAACCTGAATCTAATTCAGAAGA
TGATGACCGTCTACCACCGCAAGAGATGTCCAAAATGATACGTTCCGTTC
AGGAGATTGTGAATATATCGGAATCGAAAAGTACGCCCGACAGAATGGCG
TATAAATACCTTATCAGACAGGTAGACAAGTTACTGCGTTCAAGGGCTCT
AGACCAACAATACGATGCAATGTTTGAGGTGCCGGCGATGGTTCTTTTTC
AACCACACTTCAACAGGGGTTTCGTCGCGAAAAAACTAGTAAATCATTAT
CGCAAGAGAGGCTTCAATTGTGAAATGGATCTGTTCACAATAAAGTTGGA
GTGGGCAAAACTGGATTCGGGGAATGATGATGCTGACGACGAGAATGTTT
CTGAACCTGAATCTAATTCAGAAGATGATGACCGTCTACCACCGCAAGAG
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