mRNA_L-elsbetiae_contig1856.5416.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1856.5416.1
Unique NamemRNA_L-elsbetiae_contig1856.5416.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1856.5416.1 vs. uniprot
Match: B5LWC1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWC1_9PHYC)

HSP 1 Score: 206 bits (525), Expect = 5.530e-63
Identity = 108/223 (48.43%), Postives = 142/223 (63.68%), Query Frame = 1 
Query:   28 DFPQEVFAFFAKKGGGNTIVTPNLLLNLIGSKKICLAKYDIYVMGKKKGSLEPYYYTKLRIDTKASERNTVQGFLEVRFLAGYGYRQTGGDSSTRIMRPSGIQKLVTDDTGSFKKRAVIHLNDGGVIALSAADGFCDIPLMDDRKLAKFENSTNAKKKREAYARKKKTNNQWAHMSRVSMAAMNQKMILRMLLPYKNNLPEDMYFKEFSKDVVSLLLEVKDEF 696
            + P EV AFF KKG    IV  + +++++G   I L KYDIYVMGK+ G   P +YTKLR++ +A  RN +QG L +RFL GYGY + G D+S ++MRPS +QK VT D+ SFKKRAVIH+    V++L  A+ FC IPLMD+  LA     +NA+K REAYARKK     W HM+R +    N   + +MLL YK +L E  YF EF KDV      ++ EF
Sbjct:    6 NIPAEVSAFFGKKGSATEIVNLSKVIDIVGGSTISLEKYDIYVMGKRSGESRPSFYTKLRVECRAQARNQIQGLLGIRFLEGYGYEKAGRDNSLKVMRPSDVQKYVTQDSASFKKRAVIHIGPENVLSLCMAEPFCRIPLMDENLLATTGKKSNARK-REAYARKKARRRDWVHMTREATVKKNYTRMHQMLLAYKRSLGETEYFSEFVKDVSKTCSRLRSEF 227
[Close]
BLAST of mRNA_L-elsbetiae_contig1856.5416.1 vs. uniprot
Match: Q6XM12_9PHYC (FirrV-1-B24 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM12_9PHYC)

HSP 1 Score: 169 bits (429), Expect = 2.110e-48
Identity = 92/227 (40.53%), Postives = 140/227 (61.67%), Query Frame = 1 
Query:   22 IGDFPQEVFAFFAKKGGG--NTIVTPNLLLNLIGSKKICLAKYDIYVMGKKKGSLEPYYYTKLRIDTKASERNTVQGFLEVRFLAGYGYRQTGGDSSTRIMRPSGIQKLVTDDTGSFKKRAVIHLNDGGVIALSAADGFCDIPLMDDRKLAKFENSTNAKKKREAYARKKKTNNQWAHMSRVSMAAMNQKMILRMLLPYKNNLPEDMYFKEFSKDVVSLLLEVKDEF 696
            +  FP ++F  F  K     N ++TP  LL+L+G + + L  YDIYV+GK+ G  +  +YTK+RI+ +   RN +QGF+ VRFL GYG+      +S ++MRP+ IQKLVT D+ SFKKRA+++++   V  L+  +  C IPL+    L K +   NA+K REAYARK+   N WAH++R ++ + N   + RMLL YK N+    +F EF  DV+    +++ +F
Sbjct:   16 LSSFPPDIFDHFDTKRTTTFNQMLTPADLLHLLGRETVPLQDYDIYVLGKRPGDSKIKFYTKMRIEHRVHARNIIQGFVGVRFLGGYGFENVANSASLKVMRPTDIQKLVTQDSVSFKKRALVYIDQDHVYPLTMIEPLCHIPLVASAALDKIDKKANARK-REAYARKRSRCNDWAHVNREAIVSDNHTRLHRMLLAYKRNIRHKDFFDEFMMDVMKNCRQLERDF 241
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1856.5416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
B5LWC1_9PHYC5.530e-6348.43Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM12_9PHYC2.110e-4840.53FirrV-1-B24 n=1 Tax=Feldmannia irregularis virus a... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1856contigL-elsbetiae_contig1856:18633..19328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFirrV-1-B24
Ec32 orthologEc-06_005750.1
Exons1
Model size696
Cds size696
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.360612-CDS-L-elsbetiae_contig1856:18632..193281622815773.360612-CDS-L-elsbetiae_contig1856:18632..19328Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 18633..19328 -
1691683092.8509893-CDS-L-elsbetiae_contig1856:18632..193281691683092.8509893-CDS-L-elsbetiae_contig1856:18632..19328Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 18633..19328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1856.5416.1prot_L-elsbetiae_contig1856.5416.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1856 18633..19328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1856.5416.1

>prot_L-elsbetiae_contig1856.5416.1 ID=prot_L-elsbetiae_contig1856.5416.1|Name=mRNA_L-elsbetiae_contig1856.5416.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=232bp
MGSENGEIGDFPQEVFAFFAKKGGGNTIVTPNLLLNLIGSKKICLAKYDI
YVMGKKKGSLEPYYYTKLRIDTKASERNTVQGFLEVRFLAGYGYRQTGGD
SSTRIMRPSGIQKLVTDDTGSFKKRAVIHLNDGGVIALSAADGFCDIPLM
DDRKLAKFENSTNAKKKREAYARKKKTNNQWAHMSRVSMAAMNQKMILRM
LLPYKNNLPEDMYFKEFSKDVVSLLLEVKDEF
back to top

mRNA from alignment at L-elsbetiae_contig1856:18633..19328-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1856.5416.1 ID=mRNA_L-elsbetiae_contig1856.5416.1|Name=mRNA_L-elsbetiae_contig1856.5416.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:18633..19328- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAAGTGAAAACGGCGAAATTGGCGATTTTCCCCAGGAAGTCTTCGC
GTTCTTTGCAAAAAAAGGTGGCGGAAATACCATCGTCACACCGAATTTGC
TGCTGAATTTGATCGGTTCGAAAAAAATTTGTCTGGCCAAGTACGACATC
TACGTCATGGGGAAGAAGAAAGGTAGTCTTGAGCCCTACTACTACACGAA
ATTAAGAATCGACACTAAGGCTTCGGAAAGAAACACGGTCCAGGGGTTTC
TGGAAGTGAGGTTTCTCGCCGGATACGGCTACAGGCAGACGGGTGGCGAC
TCATCCACTCGGATAATGCGCCCTTCCGGGATACAGAAACTTGTGACAGA
CGACACGGGTTCCTTCAAAAAGAGAGCGGTGATCCACTTGAACGACGGAG
GCGTCATCGCTTTGAGCGCTGCTGATGGGTTTTGTGACATCCCGCTCATG
GACGACAGGAAGCTAGCGAAATTCGAGAACTCGACGAATGCTAAGAAGAA
GCGTGAGGCCTACGCAAGGAAGAAGAAGACAAACAATCAGTGGGCACACA
TGAGCCGTGTCTCAATGGCGGCGATGAACCAAAAGATGATTCTCCGCATG
CTCCTCCCGTACAAAAACAATCTTCCAGAAGACATGTACTTCAAGGAGTT
CAGCAAGGACGTCGTGTCGCTGTTGCTGGAGGTCAAGGACGAGTTT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1856:18633..19328-

>mRNA_L-elsbetiae_contig1856.5416.1 ID=mRNA_L-elsbetiae_contig1856.5416.1|Name=mRNA_L-elsbetiae_contig1856.5416.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1392bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:18633..19328- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAAGTGAAAACGGCGAAATTGGCGATTTTCCCCAGGAAGTCTTCGC
GTTCTTTGCAAAAAAAGGTGGCGGAAATACCATCGTCACACCGAATTTGC
TGCTGAATTTGATCGGTTCGAAAAAAATTTGTCTGGCCAAGTACGACATC
TACGTCATGGGGAAGAAGAAAGGTAGTCTTGAGCCCTACTACTACACGAA
ATTAAGAATCGACACTAAGGCTTCGGAAAGAAACACGGTCCAGGGGTTTC
TGGAAGTGAGGTTTCTCGCCGGATACGGCTACAGGCAGACGGGTGGCGAC
TCATCCACTCGGATAATGCGCCCTTCCGGGATACAGAAACTTGTGACAGA
CGACACGGGTTCCTTCAAAAAGAGAGCGGTGATCCACTTGAACGACGGAG
GCGTCATCGCTTTGAGCGCTGCTGATGGGTTTTGTGACATCCCGCTCATG
GACGACAGGAAGCTAGCGAAATTCGAGAACTCGACGAATGCTAAGAAGAA
GCGTGAGGCCTACGCAAGGAAGAAGAAGACAAACAATCAGTGGGCACACA
TGAGCCGTGTCTCAATGGCGGCGATGAACCAAAAGATGATTCTCCGCATG
CTCCTCCCGTACAAAAACAATCTTCCAGAAGACATGTACTTCAAGGAGTT
CAGCAAGGACGTCGTGTCGCTGTTGCTGGAGGTCAAGGACGAGTTTATGG
GAAGTGAAAACGGCGAAATTGGCGATTTTCCCCAGGAAGTCTTCGCGTTC
TTTGCAAAAAAAGGTGGCGGAAATACCATCGTCACACCGAATTTGCTGCT
GAATTTGATCGGTTCGAAAAAAATTTGTCTGGCCAAGTACGACATCTACG
TCATGGGGAAGAAGAAAGGTAGTCTTGAGCCCTACTACTACACGAAATTA
AGAATCGACACTAAGGCTTCGGAAAGAAACACGGTCCAGGGGTTTCTGGA
AGTGAGGTTTCTCGCCGGATACGGCTACAGGCAGACGGGTGGCGACTCAT
CCACTCGGATAATGCGCCCTTCCGGGATACAGAAACTTGTGACAGACGAC
ACGGGTTCCTTCAAAAAGAGAGCGGTGATCCACTTGAACGACGGAGGCGT
CATCGCTTTGAGCGCTGCTGATGGGTTTTGTGACATCCCGCTCATGGACG
ACAGGAAGCTAGCGAAATTCGAGAACTCGACGAATGCTAAGAAGAAGCGT
GAGGCCTACGCAAGGAAGAAGAAGACAAACAATCAGTGGGCACACATGAG
CCGTGTCTCAATGGCGGCGATGAACCAAAAGATGATTCTCCGCATGCTCC
TCCCGTACAAAAACAATCTTCCAGAAGACATGTACTTCAAGGAGTTCAGC
AAGGACGTCGTGTCGCTGTTGCTGGAGGTCAAGGACGAGTTT
back to top