mRNA_L-elsbetiae_contig1856.5414.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1856.5414.1
Unique NamemRNA_L-elsbetiae_contig1856.5414.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1856.5414.1 vs. uniprot
Match: B5LWB7_9PHYC (A2L_zn_ribbon domain-containing protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWB7_9PHYC)

HSP 1 Score: 394 bits (1013), Expect = 5.700e-136
Identity = 198/272 (72.79%), Postives = 231/272 (84.93%), Query Frame = 1
Query:    1 RSASFLKKMNAHQLLPNAPGGVSCTIDKYVIRS-RKRKSGDELERDSENKSLTQDWSCDNCNTELVYVRKDAQRVCPQCGKCSFFQEMTRSDLISQGYNYPTTYLYQRHNHFKTWLKRTQGKEATYISREITDLVCRELKKERITDMTTVDHIKVKAILKKLRKNKYYNHWVQITAIVTGKMPPQMTQEQEDSLIQMFERVQEPFEKKVKGKKRQNMLSYSFLIHKFLQLMSWDEYLPYFPLLVSTDKIQVQDSIWQELCKEVGFQFIKSTM 813
            RS  FLKKMNA ++   A   + C+ID +V R  R +K  D+   D   K++ QDW C++CN +LVYV+KDAQRVCP+CG+ +FFQEMTRSD+ISQGY  PTTYLYQRHNHFKTW+KRTQGKE T I+ EIT+LV +EL+KERITDM+ VDHIK+KAILKKLRKN+YYNH VQIT+IVTG+ PPQMT EQE+SL+QMFERVQ PFE+K+KGKKRQNMLSYSFLIHKFLQ+MS DEYLPYFPLLVS DKIQVQDSIWQELCKEV F+FIKSTM
Sbjct:   38 RSIDFLKKMNAREI---AKSNILCSIDGFVDRRVRVKKMADKPGAD---KTVAQDWRCEDCNADLVYVKKDAQRVCPECGRSTFFQEMTRSDMISQGYTPPTTYLYQRHNHFKTWIKRTQGKETTAIAPEITELVKKELRKERITDMSKVDHIKIKAILKKLRKNRYYNHCVQITSIVTGRSPPQMTDEQEESLVQMFERVQVPFEEKIKGKKRQNMLSYSFLIHKFLQIMSLDEYLPYFPLLVSADKIQVQDSIWQELCKEVNFEFIKSTM 303          
BLAST of mRNA_L-elsbetiae_contig1856.5414.1 vs. uniprot
Match: Q6XM16_9PHYC (FirrV-1-B20 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM16_9PHYC)

HSP 1 Score: 368 bits (945), Expect = 1.210e-125
Identity = 187/274 (68.25%), Postives = 220/274 (80.29%), Query Frame = 1
Query:    1 RSASFLKKMNAHQLLPNAPGGVSCTIDKYV---IRSRKRKSGDELERDSENKSLTQDWSCDNCNTELVYVRKDAQRVCPQCGKCSFFQEMTRSDLISQGYNYPTTYLYQRHNHFKTWLKRTQGKEATYISREITDLVCRELKKERITDMTTVDHIKVKAILKKLRKNKYYNHWVQITAIVTGKMPPQMTQEQEDSLIQMFERVQEPFEKKVKGKKRQNMLSYSFLIHKFLQLMSWDEYLPYFPLLVSTDKIQVQDSIWQELCKEVGFQFIKSTM 813
            RS  FLKKM A +++ +A    +C+ID+Y+   + SRK  +         +K+  QDW CD+CN  LVYV+KDAQRVC +CGK +FFQEMTR D+I QGY   TTYLYQR NHFKTW+KRTQGKE T IS EIT +V +ELKKERITDM+ VDHIK+KAILKKLRKN+YYNH VQIT +VTGK PPQMT  QE++L+QMFE+VQ  FEKK+KGKKRQNMLSYSFLIHKFLQ++S DEYLPYFPLLVS DKIQ+QDSIWQELC EV F+FIKSTM
Sbjct:   32 RSTDFLKKMKAPEIIADA---TTCSIDQYINHRVVSRKNINHQHHHPGQRDKNNAQDWRCDDCNATLVYVKKDAQRVCLECGKSTFFQEMTRGDMILQGYTPTTTYLYQRLNHFKTWIKRTQGKETTTISPEITAMVRKELKKERITDMSKVDHIKIKAILKKLRKNRYYNHCVQITTMVTGKAPPQMTDRQEETLVQMFEKVQIAFEKKIKGKKRQNMLSYSFLIHKFLQILSLDEYLPYFPLLVSADKIQIQDSIWQELCIEVNFEFIKSTM 302          
BLAST of mRNA_L-elsbetiae_contig1856.5414.1 vs. uniprot
Match: D8LPD2_ECTSI (NCLDV-specific basal transcription factor A2L n=2 Tax=root TaxID=1 RepID=D8LPD2_ECTSI)

HSP 1 Score: 312 bits (800), Expect = 2.320e-103
Identity = 169/289 (58.48%), Postives = 205/289 (70.93%), Query Frame = 1
Query:    1 RSASFLKKMNAHQLLPNAPGGVSCTIDKYVIRSRKRK---SGDELER------------DSE---NKSLTQDWSCDNCNTELVYVRKDAQRVCPQCGKCSFFQEMTRSDLISQGYNYPTTYLYQRHNHFKTWLKRTQGKEATYISREITDLVCRELKKERITDMTTVDHIKVKAILKKLRKNKYYNHWVQITAIVTGKMPPQMTQEQEDSLIQMFERVQEPFEKKVKGKKRQNMLSYSFLIHKFLQLMSWDEYLPYFPLLVSTDKIQVQDSIWQELCKEVGFQFIKSTM 813
            + A FLKKMNA     + PG V CTID +V  S  R    S  E ER            D+E      L++ W C+ CN ELVY+RKDA+RVCP CG    +QEMTR D I QGY   TTY+Y+R NHFKTWLKRTQGKE T + + + D V  ELKK+RI D+ T+ H KV+ ILKKLR NK+YN+ VQITAI+TG  PPQMT EQE +L+QMF+ +QEPF+K ++ + RQNMLSYSFLIHKFL+LMSWDEYLPYFPLL S DKIQ QD IW++LC EVGF++I+STM
Sbjct:   38 QDAKFLKKMNA-----SFPG-VVCTIDSFVDISAYRTTHHSNGEAERVVTQSDVQDADMDAEVATGNGLSKAWICEVCNKELVYIRKDAERVCPDCGLSHPYQEMTREDCIRQGYVSHTTYMYKRQNHFKTWLKRTQGKETTTVDKGVVDSVRFELKKQRIDDIRTISHTKVREILKKLRLNKHYNNCVQITAIITGVTPPQMTNEQETALLQMFDAIQEPFQKIIRSEPRQNMLSYSFLIHKFLELMSWDEYLPYFPLLRSVDKIQYQDWIWRKLCAEVGFEYIRSTM 320          
BLAST of mRNA_L-elsbetiae_contig1856.5414.1 vs. uniprot
Match: A0A0P0YMX2_9PHYC (Putative late transcription factor VLTF3 n=1 Tax=Yellowstone lake phycodnavirus 2 TaxID=1586714 RepID=A0A0P0YMX2_9PHYC)

HSP 1 Score: 165 bits (417), Expect = 7.380e-46
Identity = 84/215 (39.07%), Postives = 128/215 (59.53%), Query Frame = 1
Query:  169 CDNCNTELVYVRKD--AQRVCPQCGKCSFFQEMTRSDLISQGYNYPTTYLYQRHNHFKTWLKRTQGKEATYISREITDLVCRELKKERITDMTTVDHIKVKAILKKLRKNKYYNHWVQITAIVTGKMPPQMTQEQEDSLIQMFERVQEPFEKKVKGKKRQNMLSYSFLIHKFLQLMSWDEYLPYFPLLVSTDKIQVQDSIWQELCKEVGFQFIKS 807
            C  C+ E  ++  +  + R+C +CG   ++          Q       Y Y+R NHF  W+ + Q KE+T +  E+  L+  E KK+++ D+  + H KVK +LKKL K+KYY H   IT I+ G  PP M Q  ED L  MF  +Q+PFEK  K   R+N LSY+++++KF +L+  D+YLP FPLL S +K+  QD IW+++C E+ +Q+IK+
Sbjct:   89 CSQCHAEFSWMVDEIHSDRICTKCGYAEYYLSEEVGYKEEQEMEKNVVYSYKRENHFNEWVSQFQAKESTNVPEEVIALLRNEFKKQKLKDLAEITHEKVKTLLKKLDKSKYYEHVPYITTILNGVQPPTMPQALEDKLRLMFYHIQKPFEKH-KPLNRKNFLSYAYVLYKFCELLGEDDYLPCFPLLKSKEKLYAQDEIWKKICDELSWQYIKT 302          
BLAST of mRNA_L-elsbetiae_contig1856.5414.1 vs. uniprot
Match: A0A6C0DCN6_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DCN6_9ZZZZ)

HSP 1 Score: 164 bits (415), Expect = 1.350e-44
Identity = 90/217 (41.47%), Postives = 129/217 (59.45%), Query Frame = 1
Query:  169 CDNCNTELVYVRKDAQRVCPQCGKCSFFQEMTRSDLISQGYNYP----TTYLYQRHNHFKTWLKRTQGKEATYISREITDLVCRELKKERITDMTTVDHIKVKAILKKLRKNKYYNHWVQITAIVTGKMPPQMTQEQEDSLIQMFERVQEPFEKKVKGKKRQNMLSYSFLIHKFLQLMSWDEYLPYFPLLVSTDKIQVQDSIWQELCKEVGFQFIKS 807
            C +C TE+ +   +A   C +CG    +Q+    D     Y  P    + Y Y+R NHF  WL + Q KE+T I +E+ D +  ELKKERI D  T+   K K ILKKL+ NKYY H   I   + G+  P MT+E E+ L  MF+ +Q  F+     K R N LSYS++++KF +L+  DEYLP FPLL + DK+ +QD IWQ++C ++ ++FI+S
Sbjct:  184 CPDCGTEMTFSSNEAVFTCTKCG----YQDFVLIDSDKPSYKDPPREVSYYAYKRINHFNEWLAQFQAKESTEIPQEVYDAIVIELKKERIMDYRTLKASKAKEILKKLKFNKYYEHIPHILNRLNGQTAPVMTREVEEKLRYMFKEIQPSFQNHC-PKGRSNFLSYSYVLYKFCELLELDEYLPCFPLLKNRDKLYIQDKIWQKICADLSWEFIRS 395          
BLAST of mRNA_L-elsbetiae_contig1856.5414.1 vs. uniprot
Match: A0A2E0S5N7_9BACT (Uncharacterized protein n=1 Tax=Rhodopirellula sp. TaxID=2024855 RepID=A0A2E0S5N7_9BACT)

HSP 1 Score: 163 bits (413), Expect = 2.550e-44
Identity = 84/213 (39.44%), Postives = 129/213 (60.56%), Query Frame = 1
Query:  169 CDNCNTELVYVRKDAQRVCPQCGKCSFFQEMTRSDLISQGYNYPTTYLYQRHNHFKTWLKRTQGKEATYISREITDLVCRELKKERITDMTTVDHIKVKAILKKLRKNKYYNHWVQITAIVTGKMPPQMTQEQEDSLIQMFERVQEPFEKKVKGKKRQNMLSYSFLIHKFLQLMSWDEYLPYFPLLVSTDKIQVQDSIWQELCKEVGFQFIKS 807
            C  C+ +L  ++ +A  +C +CG            ++ Q     + + Y+R NHF+ W  + QGKE+T I  EI + +  E+KKE+ITD TT+ + K++ ILK+LR NKYY H   I   + G   PQ + E ED L  MF  +Q PF K    K R+N LSYS++++KF Q++  ++YL YFPLL S +K+ +QD IW+++C+E+G+  I S
Sbjct:  182 CKECDNQLTCLQHEAIMICNKCGYQELLLVEQNRPILKQNTKDTSHFSYKRINHFREWCNQVQGKESTDIPDEIFESILNEIKKEKITDTTTITYTKMREILKRLRINKYYEHINYILNRINGIPTPQFSSELEDKLCLMFRDIQGPFLKHC-PKDRKNFLSYSYVLYKFFQILGLNQYLKYFPLLKSREKLYLQDQIWKKICEELGYPIIPS 393          
BLAST of mRNA_L-elsbetiae_contig1856.5414.1 vs. uniprot
Match: A0A5E8CHP0_9ZZZZ (Poxvirus Late Transcription Factor VLTF3 like n=1 Tax=seawater metagenome TaxID=1561972 RepID=A0A5E8CHP0_9ZZZZ)

HSP 1 Score: 163 bits (412), Expect = 3.740e-44
Identity = 88/217 (40.55%), Postives = 130/217 (59.91%), Query Frame = 1
Query:  169 CDNCNTELVYVRKDAQRVCPQCGKCSFFQEMTRSDLISQGYNYPT----TYLYQRHNHFKTWLKRTQGKEATYISREITDLVCRELKKERITDMTTVDHIKVKAILKKLRKNKYYNHWVQITAIVTGKMPPQMTQEQEDSLIQMFERVQEPFEKKVKGKKRQNMLSYSFLIHKFLQLMSWDEYLPYFPLLVSTDKIQVQDSIWQELCKEVGFQFIKS 807
            C++CNTE +    D   +C +CG C    EM   D     Y  P+    TY Y+R NHF  WL + Q KE+T I +++ D V  E+ + RIT++  +   K++ ILKKLR NKYY H   I   + G  PP++++E E  L  MF  +QEPF    + K R+N LSYS+++HKF +L+  DE+LP FPLL S +K+  QD +W+++C+ V ++F  S
Sbjct:  184 CEHCNTEKILSACDGMFICTKCGDC----EMAIVDSDRPNYKDPSKDTSTYAYKRINHFNEWLNQFQAKESTEIPKDVYDKVLLEINRLRITNLAELSADKMRKILKKLRLNKYYEHIPHIINKLNGLPPPKLSRETERKLRHMFREIQEPFTL-YRPKGRKNFLSYSYILHKFCELLELDEFLPCFPLLKSHEKLLQQDKVWKKICQHVNWEFYPS 395          
BLAST of mRNA_L-elsbetiae_contig1856.5414.1 vs. uniprot
Match: A0A6C0IZV0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0IZV0_9ZZZZ)

HSP 1 Score: 163 bits (412), Expect = 5.820e-44
Identity = 86/213 (40.38%), Postives = 124/213 (58.22%), Query Frame = 1
Query:  169 CDNCNTELVYVRKDAQRVCPQCGKCSFFQEMTRSDLISQGYNYPTTYLYQRHNHFKTWLKRTQGKEATYISREITDLVCRELKKERITDMTTVDHIKVKAILKKLRKNKYYNHWVQITAIVTGKMPPQMTQEQEDSLIQMFERVQEPFEKKVKGKKRQNMLSYSFLIHKFLQLMSWDEYLPYFPLLVSTDKIQVQDSIWQELCKEVGFQFIKS 807
            C  CNT +   + DA  +C  CG            ++ Q     + + Y+R NHF+ W  + QGKE+T I  EI + +  E+KKE+I D  T+ + K++ ILK+LR NKYY H   I   + G   PQ + E ED L  MF  +Q PF K    K R+N LSYS++++KF Q++  DEYL YFPLL S +K+ VQD IW+++C+E+ +  I S
Sbjct:  205 CRVCNTSMTCYQHDAIMICNNCGYQELLLVEQNRPILKQNTKDTSHFSYKRINHFREWCNQVQGKESTDIPDEIFEKILNEIKKEKILDTKTITYSKMREILKRLRINKYYEHINYIINRINGIPTPQFSPELEDKLCNMFRNIQVPFLKHC-PKDRKNFLSYSYVLYKFFQILGLDEYLKYFPLLKSREKLYVQDQIWKKICEELNYDIIPS 416          
BLAST of mRNA_L-elsbetiae_contig1856.5414.1 vs. uniprot
Match: A0A6C0LDQ3_9ZZZZ (Uncharacterized protein n=2 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LDQ3_9ZZZZ)

HSP 1 Score: 164 bits (414), Expect = 9.860e-44
Identity = 93/247 (37.65%), Postives = 138/247 (55.87%), Query Frame = 1
Query:   67 SCTIDKYVIRSRKRKSGDELERDSENKSLTQDWSCDNCNTELVYVRKDAQRVCPQCGKCSFFQEMTRSDLISQGYNYPTTYLYQRHNHFKTWLKRTQGKEATYISREITDLVCRELKKERITDMTTVDHIKVKAILKKLRKNKYYNHWVQITAIVTGKMPPQMTQEQEDSLIQMFERVQEPFEKKVKGKKRQNMLSYSFLIHKFLQLMSWDEYLPYFPLLVSTDKIQVQDSIWQELCKEVGFQFIKS 807
            S  +DKY+    K+   +  E D E         C NC  ++  ++ DA  +C  CG            ++ Q     + + Y+R NHF+ W  + QGKE+T I  EI + +  E+KKE+I D  T+ + K++ ILK+LR NKYY H   I   + G   PQ +QE ED L  MF  +Q PF K    K R+N LSYS++++KF Q++  +EYL YFPLL S +K+ VQD IW+++C E+ ++ I S
Sbjct:  242 SSLVDKYMSIINKKYVRNVEEEDIE--------ICKNCKNQMTCLQHDAIIICNLCGYQELLLVEQNRPILKQNTKDTSHFSYKRINHFREWCNQVQGKESTDIPDEIFEKILTEIKKEKIVDTKTITYNKMRDILKRLRINKYYEHINYIINRINGIPTPQFSQELEDKLCNMFRNIQAPFLKHC-PKDRKNFLSYSYVLYKFFQILGLNEYLKYFPLLKSREKLYVQDQIWKKICLELNYEIIPS 479          
BLAST of mRNA_L-elsbetiae_contig1856.5414.1 vs. uniprot
Match: A0A6C0K6W7_9ZZZZ (Uncharacterized protein n=2 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0K6W7_9ZZZZ)

HSP 1 Score: 163 bits (413), Expect = 1.090e-43
Identity = 93/247 (37.65%), Postives = 138/247 (55.87%), Query Frame = 1
Query:   67 SCTIDKYVIRSRKRKSGDELERDSENKSLTQDWSCDNCNTELVYVRKDAQRVCPQCGKCSFFQEMTRSDLISQGYNYPTTYLYQRHNHFKTWLKRTQGKEATYISREITDLVCRELKKERITDMTTVDHIKVKAILKKLRKNKYYNHWVQITAIVTGKMPPQMTQEQEDSLIQMFERVQEPFEKKVKGKKRQNMLSYSFLIHKFLQLMSWDEYLPYFPLLVSTDKIQVQDSIWQELCKEVGFQFIKS 807
            S  +DKY+    K+   +  E D E         C NC  ++  ++ DA  +C  CG            ++ Q     + + Y+R NHF+ W  + QGKE+T I  EI + +  E+KKE+I D  T+ + K++ ILK+LR NKYY H   I   + G   PQ +QE ED L  MF  +Q PF K    K R+N LSYS++++KF Q++  +EYL YFPLL S +K+ VQD IW+++C E+ ++ I S
Sbjct:  229 SSLVDKYMSIINKKYVRNVEEEDIE--------ICKNCKNQMTCLQHDAIIICNICGYQELLLVEQNRPILKQNTKDTSHFSYKRINHFREWCNQVQGKESTDIPDEIFEKILTEIKKEKIVDTKTITYNKMRDILKRLRINKYYEHINYIINRINGIPTPQFSQELEDKLCNMFRNIQAPFLKHC-PKDRKNFLSYSYVLYKFFQILGLNEYLKYFPLLKSREKLYVQDQIWKKICLELNYEIIPS 466          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1856.5414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B5LWB7_9PHYC5.700e-13672.79A2L_zn_ribbon domain-containing protein n=1 Tax=Fe... [more]
Q6XM16_9PHYC1.210e-12568.25FirrV-1-B20 n=1 Tax=Feldmannia irregularis virus a... [more]
D8LPD2_ECTSI2.320e-10358.48NCLDV-specific basal transcription factor A2L n=2 ... [more]
A0A0P0YMX2_9PHYC7.380e-4639.07Putative late transcription factor VLTF3 n=1 Tax=Y... [more]
A0A6C0DCN6_9ZZZZ1.350e-4441.47Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A2E0S5N7_9BACT2.550e-4439.44Uncharacterized protein n=1 Tax=Rhodopirellula sp.... [more]
A0A5E8CHP0_9ZZZZ3.740e-4440.55Poxvirus Late Transcription Factor VLTF3 like n=1 ... [more]
A0A6C0IZV0_9ZZZZ5.820e-4440.38Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0LDQ3_9ZZZZ9.860e-4437.65Uncharacterized protein n=2 Tax=viral metagenome T... [more]
A0A6C0K6W7_9ZZZZ1.090e-4337.65Uncharacterized protein n=2 Tax=viral metagenome T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1856contigL-elsbetiae_contig1856:15425..16240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score311.2
Seed ortholog evalue4.5e-82
Seed eggNOG ortholog654926.Q8QNH7_ESV1K
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Poxvirus Late Transcription Factor VLTF3 like
EggNOG OGs4QBAE@10239,4QUU4@35237
COG Functional cat.S
Best tax leveldsDNA viruses, no RNA stage
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionEsV-1-101 basal transcription factor A2L
Ec32 orthologEc-06_005800.1
Exons1
Model size816
Cds size792
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.281807-CDS-L-elsbetiae_contig1856:15424..162161622815773.281807-CDS-L-elsbetiae_contig1856:15424..16216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 15425..16216 -
1691683092.8162541-CDS-L-elsbetiae_contig1856:15424..162161691683092.8162541-CDS-L-elsbetiae_contig1856:15424..16216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 15425..16216 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.292312-UTR-L-elsbetiae_contig1856:16216..162401622815773.292312-UTR-L-elsbetiae_contig1856:16216..16240Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1856 16217..16240 -
1691683092.8277323-UTR-L-elsbetiae_contig1856:16216..162401691683092.8277323-UTR-L-elsbetiae_contig1856:16216..16240Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1856 16217..16240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1856.5414.1prot_L-elsbetiae_contig1856.5414.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1856 15425..16216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1856.5414.1

>prot_L-elsbetiae_contig1856.5414.1 ID=prot_L-elsbetiae_contig1856.5414.1|Name=mRNA_L-elsbetiae_contig1856.5414.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=264bp
MNAHQLLPNAPGGVSCTIDKYVIRSRKRKSGDELERDSENKSLTQDWSCD
NCNTELVYVRKDAQRVCPQCGKCSFFQEMTRSDLISQGYNYPTTYLYQRH
NHFKTWLKRTQGKEATYISREITDLVCRELKKERITDMTTVDHIKVKAIL
KKLRKNKYYNHWVQITAIVTGKMPPQMTQEQEDSLIQMFERVQEPFEKKV
KGKKRQNMLSYSFLIHKFLQLMSWDEYLPYFPLLVSTDKIQVQDSIWQEL
CKEVGFQFIKSTM*
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mRNA from alignment at L-elsbetiae_contig1856:15425..16240-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1856.5414.1 ID=mRNA_L-elsbetiae_contig1856.5414.1|Name=mRNA_L-elsbetiae_contig1856.5414.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:15425..16240- (Laminarionema elsbetiae ELsaHSoW15)
CGTAGTGCTTCTTTCCTAAAAAAGATGAATGCCCACCAGCTTCTTCCAAA CGCACCCGGTGGTGTCTCATGTACCATCGACAAGTACGTGATACGGTCGC GGAAGAGGAAATCGGGAGACGAGTTGGAAAGAGATTCCGAAAATAAATCT CTTACACAGGACTGGAGCTGTGACAACTGTAACACCGAACTGGTGTACGT CAGGAAGGATGCACAAAGAGTGTGCCCTCAGTGCGGTAAATGTAGTTTTT TCCAAGAGATGACTAGATCAGACCTCATCTCTCAGGGATACAATTATCCC ACGACGTACCTCTACCAGAGACACAACCACTTCAAGACGTGGCTAAAGAG GACGCAGGGGAAGGAGGCGACCTACATTTCCCGCGAGATAACGGATCTTG TGTGCAGAGAGTTGAAAAAAGAACGGATTACGGACATGACAACCGTAGAC CACATAAAGGTCAAGGCGATCCTGAAAAAATTGAGGAAGAACAAGTACTA CAATCATTGGGTACAAATCACGGCGATTGTGACAGGAAAGATGCCCCCCC AGATGACACAAGAACAGGAAGACTCGCTCATCCAAATGTTTGAGAGAGTC CAGGAACCGTTTGAGAAGAAAGTGAAGGGGAAAAAGAGGCAGAACATGCT CTCGTACTCTTTCTTGATACATAAGTTTCTTCAACTGATGTCTTGGGACG AGTACCTCCCTTACTTCCCTCTGTTAGTTTCGACCGACAAGATTCAAGTC CAGGACTCGATATGGCAGGAGCTGTGTAAAGAGGTCGGTTTCCAGTTCAT TAAGTCTACTATGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1856:15425..16240-

>mRNA_L-elsbetiae_contig1856.5414.1 ID=mRNA_L-elsbetiae_contig1856.5414.1|Name=mRNA_L-elsbetiae_contig1856.5414.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1584bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:15425..16240- (Laminarionema elsbetiae ELsaHSoW15)
ATGAATGCCCACCAGCTTCTTCCAAACGCACCCGGTGGTGTCTCATGTAC
CATCGACAAGTACGTGATACGGTCGCGGAAGAGGAAATCGGGAGACGAGT
TGGAAAGAGATTCCGAAAATAAATCTCTTACACAGGACTGGAGCTGTGAC
AACTGTAACACCGAACTGGTGTACGTCAGGAAGGATGCACAAAGAGTGTG
CCCTCAGTGCGGTAAATGTAGTTTTTTCCAAGAGATGACTAGATCAGACC
TCATCTCTCAGGGATACAATTATCCCACGACGTACCTCTACCAGAGACAC
AACCACTTCAAGACGTGGCTAAAGAGGACGCAGGGGAAGGAGGCGACCTA
CATTTCCCGCGAGATAACGGATCTTGTGTGCAGAGAGTTGAAAAAAGAAC
GGATTACGGACATGACAACCGTAGACCACATAAAGGTCAAGGCGATCCTG
AAAAAATTGAGGAAGAACAAGTACTACAATCATTGGGTACAAATCACGGC
GATTGTGACAGGAAAGATGCCCCCCCAGATGACACAAGAACAGGAAGACT
CGCTCATCCAAATGTTTGAGAGAGTCCAGGAACCGTTTGAGAAGAAAGTG
AAGGGGAAAAAGAGGCAGAACATGCTCTCGTACTCTTTCTTGATACATAA
GTTTCTTCAACTGATGTCTTGGGACGAGTACCTCCCTTACTTCCCTCTGT
TAGTTTCGACCGACAAGATTCAAGTCCAGGACTCGATATGGCAGGAGCTG
TGTAAAGAGGTCGGTTTCCAGTTCATTAAGTCTACTATGTGAATGAATGC
CCACCAGCTTCTTCCAAACGCACCCGGTGGTGTCTCATGTACCATCGACA
AGTACGTGATACGGTCGCGGAAGAGGAAATCGGGAGACGAGTTGGAAAGA
GATTCCGAAAATAAATCTCTTACACAGGACTGGAGCTGTGACAACTGTAA
CACCGAACTGGTGTACGTCAGGAAGGATGCACAAAGAGTGTGCCCTCAGT
GCGGTAAATGTAGTTTTTTCCAAGAGATGACTAGATCAGACCTCATCTCT
CAGGGATACAATTATCCCACGACGTACCTCTACCAGAGACACAACCACTT
CAAGACGTGGCTAAAGAGGACGCAGGGGAAGGAGGCGACCTACATTTCCC
GCGAGATAACGGATCTTGTGTGCAGAGAGTTGAAAAAAGAACGGATTACG
GACATGACAACCGTAGACCACATAAAGGTCAAGGCGATCCTGAAAAAATT
GAGGAAGAACAAGTACTACAATCATTGGGTACAAATCACGGCGATTGTGA
CAGGAAAGATGCCCCCCCAGATGACACAAGAACAGGAAGACTCGCTCATC
CAAATGTTTGAGAGAGTCCAGGAACCGTTTGAGAAGAAAGTGAAGGGGAA
AAAGAGGCAGAACATGCTCTCGTACTCTTTCTTGATACATAAGTTTCTTC
AACTGATGTCTTGGGACGAGTACCTCCCTTACTTCCCTCTGTTAGTTTCG
ACCGACAAGATTCAAGTCCAGGACTCGATATGGCAGGAGCTGTGTAAAGA
GGTCGGTTTCCAGTTCATTAAGTCTACTATGTGA
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