mRNA_L-elsbetiae_contig1856.5413.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1856.5413.1
Unique NamemRNA_L-elsbetiae_contig1856.5413.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1856.5413.1 vs. uniprot
Match: Q6XM18_9PHYC (FirrV-1-B18 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM18_9PHYC)

HSP 1 Score: 101 bits (252), Expect = 1.120e-26
Identity = 45/59 (76.27%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:   22 RKRIMTPAIDGMTVRKERACLSEIRSMSPDITYKHILSNGWTAGEFALRYVTGHHRKRK 198
            RKR+MTPAIDGMTV+ ERACLSEIR + P+I ++H+LSNGWTAG+FAL YVTGHH+KRK
Sbjct:   14 RKRVMTPAIDGMTVKMERACLSEIRDLCPNINHQHVLSNGWTAGKFALCYVTGHHKKRK 72
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BLAST of mRNA_L-elsbetiae_contig1856.5413.1 vs. uniprot
Match: B5LWB5_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWB5_9PHYC)

HSP 1 Score: 100 bits (250), Expect = 4.310e-26
Identity = 42/61 (68.85%), Postives = 58/61 (95.08%), Query Frame = 1 
Query:   16 EDRKRIMTPAIDGMTVRKERACLSEIRSMSPDITYKHILSNGWTAGEFALRYVTGHHRKRK 198
            ++RKR+MTPAI+GM+V+ ER+CLSEIR++ PDIT++H+L+NGWTAG+FAL Y+TGHH+KRK
Sbjct:    5 KNRKRVMTPAIEGMSVKMERSCLSEIRTLCPDITHEHVLANGWTAGKFALCYITGHHKKRK 65
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BLAST of mRNA_L-elsbetiae_contig1856.5413.1 vs. uniprot
Match: D8LPD0_ECTSI (EsV-1-99 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPD0_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 7.720e-24
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    4 SDISEDRKRIMTPAIDGMTVRKERACLSEIRSMSPDITYKHILSNGWTAGEFALRYVTGHHRKRKSKT 207
            SD  +  KR+MTPAI+ MTV++ERACLSEIR +  D  ++HILSNGWT G+FAL YVTG H KRK+KT
Sbjct:    8 SDSQQQGKRVMTPAIESMTVKEERACLSEIRRLGADADHQHILSNGWTTGKFALMYVTGQHVKRKTKT 75
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BLAST of mRNA_L-elsbetiae_contig1856.5413.1 vs. uniprot
Match: Q8QNH9_ESV1K (EsV-1-99 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNH9_ESV1K)

HSP 1 Score: 92.8 bits (229), Expect = 4.460e-23
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    4 SDISEDRKRIMTPAIDGMTVRKERACLSEIRSMSPDITYKHILSNGWTAGEFALRYVTGHHRKRKSKT 207
            +D  +  KR+MTPAI+ MTV++ERACLSEIR +  ++ ++HILSNGWT G+FAL YVTG H KRK KT
Sbjct:    8 ADAQQHGKRVMTPAIENMTVKEERACLSEIRKLGAEVDHQHILSNGWTTGKFALMYVTGQHVKRKIKT 75
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1856.5413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q6XM18_9PHYC1.120e-2676.27FirrV-1-B18 n=1 Tax=Feldmannia irregularis virus a... [more]
B5LWB5_9PHYC4.310e-2668.85Uncharacterized protein n=1 Tax=Feldmannia species... [more]
D8LPD0_ECTSI7.720e-2464.71EsV-1-99 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNH9_ESV1K4.460e-2361.76EsV-1-99 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1856contigL-elsbetiae_contig1856:14674..14901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-99
Ec32 orthologEc-06_005820.1
Exons1
Model size228
Cds size228
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.247239-CDS-L-elsbetiae_contig1856:14673..149011622815773.247239-CDS-L-elsbetiae_contig1856:14673..14901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 14674..14901 -
1691683092.8059318-CDS-L-elsbetiae_contig1856:14673..149011691683092.8059318-CDS-L-elsbetiae_contig1856:14673..14901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 14674..14901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1856.5413.1prot_L-elsbetiae_contig1856.5413.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1856 14674..14901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1856.5413.1

>prot_L-elsbetiae_contig1856.5413.1 ID=prot_L-elsbetiae_contig1856.5413.1|Name=mRNA_L-elsbetiae_contig1856.5413.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=76bp
MSDISEDRKRIMTPAIDGMTVRKERACLSEIRSMSPDITYKHILSNGWTA
GEFALRYVTGHHRKRKSKTTRCEKK*
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mRNA from alignment at L-elsbetiae_contig1856:14674..14901-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1856.5413.1 ID=mRNA_L-elsbetiae_contig1856.5413.1|Name=mRNA_L-elsbetiae_contig1856.5413.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=228bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:14674..14901- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAGATATTTCCGAGGATCGTAAGAGAATCATGACTCCGGCAATCGA
CGGGATGACTGTGAGAAAAGAAAGGGCATGTCTTTCTGAAATCAGATCTA
TGAGCCCCGACATCACGTACAAGCACATTCTCTCAAATGGTTGGACGGCA
GGGGAGTTCGCACTGCGCTACGTCACCGGCCACCACCGGAAGAGGAAGTC
TAAGACAACGCGTTGCGAAAAAAAATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1856:14674..14901-

>mRNA_L-elsbetiae_contig1856.5413.1 ID=mRNA_L-elsbetiae_contig1856.5413.1|Name=mRNA_L-elsbetiae_contig1856.5413.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=456bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:14674..14901- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAGATATTTCCGAGGATCGTAAGAGAATCATGACTCCGGCAATCGA
CGGGATGACTGTGAGAAAAGAAAGGGCATGTCTTTCTGAAATCAGATCTA
TGAGCCCCGACATCACGTACAAGCACATTCTCTCAAATGGTTGGACGGCA
GGGGAGTTCGCACTGCGCTACGTCACCGGCCACCACCGGAAGAGGAAGTC
TAAGACAACGCGTTGCGAAAAAAAATAGATGTCAGATATTTCCGAGGATC
GTAAGAGAATCATGACTCCGGCAATCGACGGGATGACTGTGAGAAAAGAA
AGGGCATGTCTTTCTGAAATCAGATCTATGAGCCCCGACATCACGTACAA
GCACATTCTCTCAAATGGTTGGACGGCAGGGGAGTTCGCACTGCGCTACG
TCACCGGCCACCACCGGAAGAGGAAGTCTAAGACAACGCGTTGCGAAAAA
AAATAG
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