mRNA_L-elsbetiae_contig1856.5405.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1856.5405.1
Unique NamemRNA_L-elsbetiae_contig1856.5405.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1856.5405.1 vs. uniprot
Match: UPI0009BB9D40 (NADAR family protein n=1 Tax=Chryseobacterium phocaeense TaxID=1816690 RepID=UPI0009BB9D40)

HSP 1 Score: 92.0 bits (227), Expect = 9.540e-21
Identity = 61/141 (43.26%), Postives = 85/141 (60.28%), Query Frame = 1
Query:    1 ICQTAEHYVMAQKARIGWIDAGGKLDAEEIVRKTSKIINSKTA-EAIRIGGEVEIEDAK-WDNTKFDIVKLANSLKFQSSQYL-VDLIRNSNKILVAAS-VDEVWGCGMSFENPRIRDPAHCEGQNLLGLALMDVRSYLNR 411
            + +TAEHY+MA KAR+           EEI+ K   ++ S+T  +A  +G +V+  +AK WD  K++IVK AN LKF  S  L   L+   NKIL+ AS  D +WG GM   +PR ++P   +G+NLLG ALM+VR  L R
Sbjct:   51 VYKTAEHYMMAGKARL--------FKDEEILEK---VLKSETPNDAKSLGRKVKHFEAKLWDAHKYEIVKKANLLKFSQSPRLEAFLLSTDNKILIEASPYDRIWGIGMLESDPRAQNPLLWDGENLLGFALMEVRDELRR 180          
BLAST of mRNA_L-elsbetiae_contig1856.5405.1 vs. uniprot
Match: UPI00053382EA (NADAR family protein n=1 Tax=Chryseobacterium oranimense TaxID=421058 RepID=UPI00053382EA)

HSP 1 Score: 91.7 bits (226), Expect = 1.310e-20
Identity = 62/141 (43.97%), Postives = 85/141 (60.28%), Query Frame = 1
Query:    1 ICQTAEHYVMAQKARIGWIDAGGKLDAEEIVRKTSKIINSKTA-EAIRIGGEVEIEDAK-WDNTKFDIVKLANSLKFQSSQYLVD-LIRNSNKILVAAS-VDEVWGCGMSFENPRIRDPAHCEGQNLLGLALMDVRSYLNR 411
            I +TAEHY+MA KAR+         + E+ + K   II S+T  +A  +G +VE  D K WD  KF+IVK AN LKF  +    D L+  ++++LV AS  D++WG GM   + R  DPA  EG+NLLG ALM+VR  L +
Sbjct:   50 IYKTAEHYMMAGKARL--------FNDEKALEK---IIKSETPNQAKSLGRKVENFDPKIWDENKFEIVKWANLLKFAQNPKFKDFLLSTADQVLVEASPYDKIWGIGMLESDSRAADPALWEGENLLGFALMEVRDELKK 179          
BLAST of mRNA_L-elsbetiae_contig1856.5405.1 vs. uniprot
Match: UPI0019210BBB (NADAR family protein n=1 Tax=Chryseobacterium endalhagicum TaxID=2797638 RepID=UPI0019210BBB)

HSP 1 Score: 90.9 bits (224), Expect = 2.680e-20
Identity = 60/141 (42.55%), Postives = 88/141 (62.41%), Query Frame = 1
Query:    1 ICQTAEHYVMAQKARIGWIDAGGKLDAEEIVRKTSKIINSKTA-EAIRIGGEVEIEDAK-WDNTKFDIVKLANSLKF-QSSQYLVDLIRNSNKILVAAS-VDEVWGCGMSFENPRIRDPAHCEGQNLLGLALMDVRSYLNR 411
            + +TAEHY+MA KAR+         + +EI+ K   ++ S+T  +A  +G +V+  D K WD  K+DIVK AN LKF Q+ ++   L+  ++KILV AS  D++WG GM   +PR  +P   +G+NLLG ALM+VR  L R
Sbjct:   51 VYKTAEHYMMAGKARL--------FNDDEILEK---VLCSETPNDAKSLGRKVKNFDPKLWDEYKYDIVKKANLLKFSQNPKFEEFLLATNDKILVEASPYDKIWGIGMLESDPRAHNPLLWDGENLLGFALMEVRDELRR 180          
BLAST of mRNA_L-elsbetiae_contig1856.5405.1 vs. uniprot
Match: A0A1M6ZTG4_9FLAO (NADAR domain-containing protein n=2 Tax=Chryseobacterium carnipullorum TaxID=1124835 RepID=A0A1M6ZTG4_9FLAO)

HSP 1 Score: 90.5 bits (223), Expect = 3.780e-20
Identity = 58/139 (41.73%), Postives = 86/139 (61.87%), Query Frame = 1
Query:    7 QTAEHYVMAQKARIGWIDAGGKLDAEEIVRKTSKIINSKTAEAIR-IGGEVEIEDAK-WDNTKFDIVKLANSLKF-QSSQYLVDLIRNSNKILVAAS-VDEVWGCGMSFENPRIRDPAHCEGQNLLGLALMDVRSYLNR 411
            +TAEHY+MA KA++         + +EI+ K   I+ ++T +  + +G +V+  D K WD  K++IVK AN LKF Q+S++   L+   NKIL+ AS  D +WG GM   + R +DPA   G+N+LG ALM+VR  L R
Sbjct:   53 KTAEHYMMAGKAKL--------FNDQEILEK---IVKAETPDQAKSLGRKVKNFDPKLWDEHKYEIVKNANLLKFSQNSKFKDFLLSTDNKILIEASPYDRIWGIGMLETDSRAKDPALWNGENMLGFALMEVRDELRR 180          
BLAST of mRNA_L-elsbetiae_contig1856.5405.1 vs. uniprot
Match: U3A256_VIBPR (NADAR domain-containing protein n=13 Tax=Vibrio TaxID=662 RepID=U3A256_VIBPR)

HSP 1 Score: 90.1 bits (222), Expect = 5.990e-20
Identity = 53/135 (39.26%), Postives = 83/135 (61.48%), Query Frame = 1
Query:   10 TAEHYVMAQKARIGWIDAGGKLDAEEIVRKTSKIINSKTAEAIRIGGEVE-IEDAKWDNTKFDIVKLANSLKFQSSQYLVDLIRN-SNKILVAAS-VDEVWGCGMSFENPRIRDPAHCEGQNLLGLALMDVRSYL 405
            TAEHY+MA+KA++     G     ++I++ T+        EA  +G +V+  +++KW   +F IV   N LKF  +Q L + + N SN++LV AS VD++WG G++ +N +  +P   +GQNLLG ALM+VR  L
Sbjct:   56 TAEHYMMAEKAKL----FGDNETYQKIIKATNP------GEAKSLGRDVQGFDESKWGENRFQIVVSGNVLKFSQNQKLREFLLNTSNRVLVEASPVDKIWGIGLAVDNQKAENPNLWKGQNLLGFALMEVRDIL 180          
BLAST of mRNA_L-elsbetiae_contig1856.5405.1 vs. uniprot
Match: A0A496NBS1_MORSP (NADAR family protein n=1 Tax=Moraxella sp. TaxID=479 RepID=A0A496NBS1_MORSP)

HSP 1 Score: 90.1 bits (222), Expect = 6.420e-20
Identity = 55/137 (40.15%), Postives = 79/137 (57.66%), Query Frame = 1
Query:   10 TAEHYVMAQKARIGWIDAGGKLDAEEIVRKTSKIINSKTAEAIRIGGEVE-IEDAKWDNTKFDIVKLANSLKF-QSSQYLVDLIRNSNKILVAAS-VDEVWGCGMSFENPRIRDPAHCEGQNLLGLALMDVRSYLNR 411
            TAEHY+MAQKA++         D ++I  +  K  + K A+ +  G +++  +D  W   +FDIV   N  KF Q+      L+   N+ILV AS VD +WG GM+ +NP I +P H +G NLLG ALM VR  L++
Sbjct:   56 TAEHYMMAQKAKL--------FDDDKIFTEILKSKHPKQAKDL--GRKIQNFDDGHWQKHRFDIVTAGNLAKFSQNPDLKAYLLNTGNRILVEASPVDRIWGIGMAKDNPNIHNPHHWQGLNLLGFALMTVRDQLHQ 182          
BLAST of mRNA_L-elsbetiae_contig1856.5405.1 vs. uniprot
Match: UPI001E30CA6E (NADAR family protein n=2 Tax=Chryseobacterium TaxID=59732 RepID=UPI001E30CA6E)

HSP 1 Score: 89.7 bits (221), Expect = 7.520e-20
Identity = 57/137 (41.61%), Postives = 84/137 (61.31%), Query Frame = 1
Query:    7 QTAEHYVMAQKARIGWIDAGGKLDAEEIVRKTSKIINSKTA-EAIRIGGEVEIEDAK-WDNTKFDIVKLANSLKFQSSQYLVD-LIRNSNKILVAAS-VDEVWGCGMSFENPRIRDPAHCEGQNLLGLALMDVRSYL 405
            QTAEHY+MA KAR+         + +E +++   I+NS+T  +A  +G  V+  D K WD  K++IV+ AN LKF  ++   + L+   +KILV AS  D +WG GM   +P+ +DP+   G+NLLG ALM+VR  L
Sbjct:   53 QTAEHYMMAGKARL--------FNDDETLKE---ILNSETPNQAKSLGRNVKNFDPKVWDEQKYEIVRRANLLKFSQNEAFKEFLLSTDDKILVEASPYDTIWGIGMLETDPKAQDPSQWNGENLLGFALMEVRDLL 178          
BLAST of mRNA_L-elsbetiae_contig1856.5405.1 vs. uniprot
Match: A0A840KC34_9FLAO (RibA/ribD-fused uncharacterized protein n=1 Tax=Chryseobacterium defluvii TaxID=160396 RepID=A0A840KC34_9FLAO)

HSP 1 Score: 89.4 bits (220), Expect = 1.060e-19
Identity = 57/139 (41.01%), Postives = 83/139 (59.71%), Query Frame = 1
Query:    7 QTAEHYVMAQKARIGWIDAGGKLDAEEIVRKTSKIINSKTAEAIR-IGGEVE-IEDAKWDNTKFDIVKLANSLKFQSSQYLVD-LIRNSNKILVAAS-VDEVWGCGMSFENPRIRDPAHCEGQNLLGLALMDVRSYLNR 411
            +TAEHY+MA KAR         L  ++I+   ++I+ S   + ++ +G +V+  ++  WD  K++IV+  N LKF  +Q L D L+   NKILV AS  D+VWG GM   NP+  +P    G+NLLG ALM+VR  L R
Sbjct:   53 KTAEHYMMAGKAR---------LFDDDII--CNEILKSNDPDMVKKLGRKVKNFDNQLWDEHKYEIVRKGNLLKFSQNQKLRDFLLSTENKILVEASPYDKVWGIGMLENNPKAENPLEWNGENLLGFALMEVRDELKR 180          
BLAST of mRNA_L-elsbetiae_contig1856.5405.1 vs. uniprot
Match: A0A0J7IKL1_9FLAO (NADAR domain-containing protein n=1 Tax=Chryseobacterium angstadtii TaxID=558151 RepID=A0A0J7IKL1_9FLAO)

HSP 1 Score: 89.0 bits (219), Expect = 1.500e-19
Identity = 57/137 (41.61%), Postives = 86/137 (62.77%), Query Frame = 1
Query:    7 QTAEHYVMAQKARIGWIDAGGKLDAEEIVRKTSKIINSKTA-EAIRIGGEVEIEDAK-WDNTKFDIVKLANSLKF-QSSQYLVDLIRNSNKILVAAS-VDEVWGCGMSFENPRIRDPAHCEGQNLLGLALMDVRSYL 405
            +TAEHY+MA KA++         + +EI+++   ++ S+T  +A  +G +V+  D K WD  KF+IVK AN LKF Q+ +Y   L+   +KIL+ AS  D++WG GM   + R  DP+  +G+NLLG ALM+VR  L
Sbjct:   53 KTAEHYMMAGKAKL--------FNDQEILQE---VLKSETPNQAKSLGRKVKSFDPKLWDEHKFEIVKKANFLKFSQNPEYRAFLLSTGDKILIEASPYDKIWGIGMLETDTRAHDPSLWDGENLLGFALMEVRDEL 178          
BLAST of mRNA_L-elsbetiae_contig1856.5405.1 vs. uniprot
Match: A0A261GUH3_9GAMM (NADAR domain-containing protein n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GUH3_9GAMM)

HSP 1 Score: 89.0 bits (219), Expect = 1.640e-19
Identity = 53/136 (38.97%), Postives = 86/136 (63.24%), Query Frame = 1
Query:   10 TAEHYVMAQKARIGWIDAGGKLDAEEIVRKTSKIINSKTAEAIRIGGEVE-IEDAKWDNTKFDIVKLANSLKFQSSQYLVDLIRNS-NKILVAAS-VDEVWGCGMSFENPRIRDPAHCEGQNLLGLALMDVRSYLN 408
            TAEH++MA+KAR+      G  +AE+ +     ++     EA ++G EV+  E++ W++ +FDIV  AN LKF  +  L + + N+ ++ILV AS VD++WG G++ ++P + +P    G NLLG ALM+VR  L+
Sbjct:   58 TAEHFMMAEKARLF-----GDSNAEQKI-----LLADNPGEAKKLGREVQGFENSVWEHHRFDIVVKANLLKFGQNAELKEFLLNTGDRILVEASPVDKIWGVGLAMDHPAVENPYQWRGLNLLGFALMEVRLQLS 183          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1856.5405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0009BB9D409.540e-2143.26NADAR family protein n=1 Tax=Chryseobacterium phoc... [more]
UPI00053382EA1.310e-2043.97NADAR family protein n=1 Tax=Chryseobacterium oran... [more]
UPI0019210BBB2.680e-2042.55NADAR family protein n=1 Tax=Chryseobacterium enda... [more]
A0A1M6ZTG4_9FLAO3.780e-2041.73NADAR domain-containing protein n=2 Tax=Chryseobac... [more]
U3A256_VIBPR5.990e-2039.26NADAR domain-containing protein n=13 Tax=Vibrio Ta... [more]
A0A496NBS1_MORSP6.420e-2040.15NADAR family protein n=1 Tax=Moraxella sp. TaxID=4... [more]
UPI001E30CA6E7.520e-2041.61NADAR family protein n=2 Tax=Chryseobacterium TaxI... [more]
A0A840KC34_9FLAO1.060e-1941.01RibA/ribD-fused uncharacterized protein n=1 Tax=Ch... [more]
A0A0J7IKL1_9FLAO1.500e-1941.61NADAR domain-containing protein n=1 Tax=Chryseobac... [more]
A0A261GUH3_9GAMM1.640e-1938.97NADAR domain-containing protein n=1 Tax=Hahella sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1856contigL-elsbetiae_contig1856:7476..7886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score80.5
Seed ortholog evalue6.3e-13
Seed eggNOG ortholog421531.IX38_01875
KEGG koko:K09935
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-tyrosine sulfation
EggNOG OGs1I1X4@117743,3ZQ99@59732,4NP2J@976,COG3236@2,COG5113@1
COG Functional cat.O
Best tax levelChryseobacterium
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size411
Cds size384
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.9166322-CDS-L-elsbetiae_contig1856:7475..78591622815772.9166322-CDS-L-elsbetiae_contig1856:7475..7859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 7476..7859 -
1691683092.6742055-CDS-L-elsbetiae_contig1856:7475..78591691683092.6742055-CDS-L-elsbetiae_contig1856:7475..7859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 7476..7859 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.928734-UTR-L-elsbetiae_contig1856:7859..78861622815772.928734-UTR-L-elsbetiae_contig1856:7859..7886Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1856 7860..7886 -
1691683092.6889741-UTR-L-elsbetiae_contig1856:7859..78861691683092.6889741-UTR-L-elsbetiae_contig1856:7859..7886Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1856 7860..7886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1856.5405.1prot_L-elsbetiae_contig1856.5405.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1856 7476..7859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1856.5405.1

>prot_L-elsbetiae_contig1856.5405.1 ID=prot_L-elsbetiae_contig1856.5405.1|Name=mRNA_L-elsbetiae_contig1856.5405.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
MAQKARIGWIDAGGKLDAEEIVRKTSKIINSKTAEAIRIGGEVEIEDAKW
DNTKFDIVKLANSLKFQSSQYLVDLIRNSNKILVAASVDEVWGCGMSFEN
PRIRDPAHCEGQNLLGLALMDVRSYLNR
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mRNA from alignment at L-elsbetiae_contig1856:7476..7886-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1856.5405.1 ID=mRNA_L-elsbetiae_contig1856.5405.1|Name=mRNA_L-elsbetiae_contig1856.5405.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=411bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:7476..7886- (Laminarionema elsbetiae ELsaHSoW15)
ATTTGTCAAACGGCCGAACACTACGTGATGGCCCAAAAGGCCAGAATCGG GTGGATAGACGCAGGAGGCAAACTTGACGCCGAAGAAATTGTTCGGAAAA CGTCTAAAATTATAAACTCGAAAACGGCCGAAGCAATACGGATTGGTGGA GAAGTCGAAATCGAAGACGCCAAGTGGGACAATACGAAGTTTGACATAGT AAAGTTGGCGAATTCCCTGAAATTCCAGAGTAGCCAATACTTGGTGGATT TAATTAGAAACAGTAATAAGATTTTGGTCGCAGCCTCGGTCGACGAAGTA TGGGGCTGTGGTATGAGTTTTGAGAATCCACGTATCAGGGATCCCGCCCA CTGCGAAGGTCAAAATTTACTGGGTTTAGCGTTGATGGACGTGAGGAGTT ATCTCAATCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1856:7476..7886-

>mRNA_L-elsbetiae_contig1856.5405.1 ID=mRNA_L-elsbetiae_contig1856.5405.1|Name=mRNA_L-elsbetiae_contig1856.5405.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:7476..7886- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCCAAAAGGCCAGAATCGGGTGGATAGACGCAGGAGGCAAACTTGA
CGCCGAAGAAATTGTTCGGAAAACGTCTAAAATTATAAACTCGAAAACGG
CCGAAGCAATACGGATTGGTGGAGAAGTCGAAATCGAAGACGCCAAGTGG
GACAATACGAAGTTTGACATAGTAAAGTTGGCGAATTCCCTGAAATTCCA
GAGTAGCCAATACTTGGTGGATTTAATTAGAAACAGTAATAAGATTTTGG
TCGCAGCCTCGGTCGACGAAGTATGGGGCTGTGGTATGAGTTTTGAGAAT
CCACGTATCAGGGATCCCGCCCACTGCGAAGGTCAAAATTTACTGGGTTT
AGCGTTGATGGACGTGAGGAGTTATCTCAATCGTATGGCCCAAAAGGCCA
GAATCGGGTGGATAGACGCAGGAGGCAAACTTGACGCCGAAGAAATTGTT
CGGAAAACGTCTAAAATTATAAACTCGAAAACGGCCGAAGCAATACGGAT
TGGTGGAGAAGTCGAAATCGAAGACGCCAAGTGGGACAATACGAAGTTTG
ACATAGTAAAGTTGGCGAATTCCCTGAAATTCCAGAGTAGCCAATACTTG
GTGGATTTAATTAGAAACAGTAATAAGATTTTGGTCGCAGCCTCGGTCGA
CGAAGTATGGGGCTGTGGTATGAGTTTTGAGAATCCACGTATCAGGGATC
CCGCCCACTGCGAAGGTCAAAATTTACTGGGTTTAGCGTTGATGGACGTG
AGGAGTTATCTCAATCGT
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