mRNA_L-elsbetiae_contig18559.5402.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18559.5402.1
Unique NamemRNA_L-elsbetiae_contig18559.5402.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18559.5402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18559contigL-elsbetiae_contig18559:1397..2055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSerine/threonine/dual specificity protein kinase, catalytic domain
Ec32 orthologEc-26_005180.3
Exons1
Model size660
Cds size630
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.7985575-UTR-L-elsbetiae_contig18559:1396..14251622815772.7985575-UTR-L-elsbetiae_contig18559:1396..1425Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18559 1397..1425 +
1691683092.6249769-UTR-L-elsbetiae_contig18559:1396..14251691683092.6249769-UTR-L-elsbetiae_contig18559:1396..1425Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18559 1397..1425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.8145587-CDS-L-elsbetiae_contig18559:1425..20551622815772.8145587-CDS-L-elsbetiae_contig18559:1425..2055Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18559 1426..2055 +
1691683092.6356323-CDS-L-elsbetiae_contig18559:1425..20551691683092.6356323-CDS-L-elsbetiae_contig18559:1425..2055Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18559 1426..2055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18559.5402.1prot_L-elsbetiae_contig18559.5402.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18559 1426..2055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18559.5402.1

>prot_L-elsbetiae_contig18559.5402.1 ID=prot_L-elsbetiae_contig18559.5402.1|Name=mRNA_L-elsbetiae_contig18559.5402.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=210bp
MGNLFSCCHPGRKEEPGGSTTDRLLHQDNSTQTGCVAEEETHGSTIERPK
GRGLCEDTSGIIEKEQSGATRGTARSSCSSSGGGSSSGSHPAEPATSASA
CTGRATPTRAQGSALPTSSGHGVGAERGAEGTSARGYATGPSAGAIGSSG
AAAGAAALPLVHRSAGAMPRAHPNDQQRWQHQVVVGGGGAHAGDIRLSGR
GGAGAAPRGG
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mRNA from alignment at L-elsbetiae_contig18559:1397..2055+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18559.5402.1 ID=mRNA_L-elsbetiae_contig18559.5402.1|Name=mRNA_L-elsbetiae_contig18559.5402.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=659bp|location=Sequence derived from alignment at L-elsbetiae_contig18559:1397..2055+ (Laminarionema elsbetiae ELsaHSoW15)
TTGGCACGCGCACACCACACAAGGGAGGCATGGGTAACTTATTCTCATGC
TGCCATCCTGGGCGCAAGGAAGAACCGGGTGGCTCCACGACAGACAGACT
TCTTCATCAGGATAACTCGACACAAACAGGGTGTGTAGCGGAGGAAGAAA
CGCACGGCTCGACTATAGAACGGCCGAAGGGTCGAGGCCTTTGTGAGGAC
ACATCAGGGATCATAGAAAAGGAGCAGTCGGGGGCGACACGAGGGACGGC
ACGAAGTAGTTGCAGCAGCAGCGGCGGCGGTAGTTCTAGTGGCTCACATC
CTGCTGAGCCAGCAACGAGCGCGTCCGCGTGTACAGGACGCGCGACACCA
ACACGAGCGCAAGGTAGCGCCTTGCCGACATCCAGTGGCCACGGTGTTGG
TGCAGAGAGGGGCGCTGAAGGAACGTCCGCCCGAGGCTACGCTACGGGGC
CATCAGCAGGGGCTATTGGGTCATCAGGAGCAGCAGCAGGAGCGGCGGCG
CTGCCGCTAGTGCACCGATCCGCTGGCGCAATGCCACGCGCACACCCAAA
TGACCAGCAGCGATGGCAGCACCAAGTCGTCGTCGGCGGTGGCGGGGCAC
ACGCGGGAGATATCCGCTTAAGCGGACGCGGTGGCGCGGGAGCGGCACCT
AGAGGAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18559:1397..2055+

>mRNA_L-elsbetiae_contig18559.5402.1 ID=mRNA_L-elsbetiae_contig18559.5402.1|Name=mRNA_L-elsbetiae_contig18559.5402.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1260bp|location=Sequence derived from alignment at L-elsbetiae_contig18559:1397..2055+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTAACTTATTCTCATGCTGCCATCCTGGGCGCAAGGAAGAACCGGG
TGGCTCCACGACAGACAGACTTCTTCATCAGGATAACTCGACACAAACAG
GGTGTGTAGCGGAGGAAGAAACGCACGGCTCGACTATAGAACGGCCGAAG
GGTCGAGGCCTTTGTGAGGACACATCAGGGATCATAGAAAAGGAGCAGTC
GGGGGCGACACGAGGGACGGCACGAAGTAGTTGCAGCAGCAGCGGCGGCG
GTAGTTCTAGTGGCTCACATCCTGCTGAGCCAGCAACGAGCGCGTCCGCG
TGTACAGGACGCGCGACACCAACACGAGCGCAAGGTAGCGCCTTGCCGAC
ATCCAGTGGCCACGGTGTTGGTGCAGAGAGGGGCGCTGAAGGAACGTCCG
CCCGAGGCTACGCTACGGGGCCATCAGCAGGGGCTATTGGGTCATCAGGA
GCAGCAGCAGGAGCGGCGGCGCTGCCGCTAGTGCACCGATCCGCTGGCGC
AATGCCACGCGCACACCCAAATGACCAGCAGCGATGGCAGCACCAAGTCG
TCGTCGGCGGTGGCGGGGCACACGCGGGAGATATCCGCTTAAGCGGACGC
GGTGGCGCGGGAGCGGCACCTAGAGGAGGGATGGGTAACTTATTCTCATG
CTGCCATCCTGGGCGCAAGGAAGAACCGGGTGGCTCCACGACAGACAGAC
TTCTTCATCAGGATAACTCGACACAAACAGGGTGTGTAGCGGAGGAAGAA
ACGCACGGCTCGACTATAGAACGGCCGAAGGGTCGAGGCCTTTGTGAGGA
CACATCAGGGATCATAGAAAAGGAGCAGTCGGGGGCGACACGAGGGACGG
CACGAAGTAGTTGCAGCAGCAGCGGCGGCGGTAGTTCTAGTGGCTCACAT
CCTGCTGAGCCAGCAACGAGCGCGTCCGCGTGTACAGGACGCGCGACACC
AACACGAGCGCAAGGTAGCGCCTTGCCGACATCCAGTGGCCACGGTGTTG
GTGCAGAGAGGGGCGCTGAAGGAACGTCCGCCCGAGGCTACGCTACGGGG
CCATCAGCAGGGGCTATTGGGTCATCAGGAGCAGCAGCAGGAGCGGCGGC
GCTGCCGCTAGTGCACCGATCCGCTGGCGCAATGCCACGCGCACACCCAA
ATGACCAGCAGCGATGGCAGCACCAAGTCGTCGTCGGCGGTGGCGGGGCA
CACGCGGGAGATATCCGCTTAAGCGGACGCGGTGGCGCGGGAGCGGCACC
TAGAGGAGGG
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