mRNA_L-elsbetiae_contig18552.5400.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18552.5400.1
Unique NamemRNA_L-elsbetiae_contig18552.5400.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18552.5400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18552contigL-elsbetiae_contig18552:710..1210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size501
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18552.5400.1prot_L-elsbetiae_contig18552.5400.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18552 738..1073 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.7069206-UTR-L-elsbetiae_contig18552:709..7371622815772.7069206-UTR-L-elsbetiae_contig18552:709..737Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18552 710..737 +
1691683092.5816412-UTR-L-elsbetiae_contig18552:709..7371691683092.5816412-UTR-L-elsbetiae_contig18552:709..737Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18552 710..737 +
1622815772.735452-UTR-L-elsbetiae_contig18552:1073..12101622815772.735452-UTR-L-elsbetiae_contig18552:1073..1210Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18552 1074..1210 +
1691683092.6010604-UTR-L-elsbetiae_contig18552:1073..12101691683092.6010604-UTR-L-elsbetiae_contig18552:1073..1210Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18552 1074..1210 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.7196882-CDS-L-elsbetiae_contig18552:737..10731622815772.7196882-CDS-L-elsbetiae_contig18552:737..1073Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18552 738..1073 +
1691683092.590402-CDS-L-elsbetiae_contig18552:737..10731691683092.590402-CDS-L-elsbetiae_contig18552:737..1073Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18552 738..1073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18552.5400.1

>prot_L-elsbetiae_contig18552.5400.1 ID=prot_L-elsbetiae_contig18552.5400.1|Name=mRNA_L-elsbetiae_contig18552.5400.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MRVRAISRSLAGLPGLAAGVISGGRNRNVAPLLSAGTSITSSATTQCSRI
ISASTCSGVPARPAGNTDHAFPFVSCAELSDASVAPAVPSPCCAAKKTHI
LLLTSTIPSSA*
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mRNA from alignment at L-elsbetiae_contig18552:710..1210+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18552.5400.1 ID=mRNA_L-elsbetiae_contig18552.5400.1|Name=mRNA_L-elsbetiae_contig18552.5400.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=501bp|location=Sequence derived from alignment at L-elsbetiae_contig18552:710..1210+ (Laminarionema elsbetiae ELsaHSoW15)
CGACCGTCTCGCTTTTCACCCAAACCGGATGCGAGTCCGCGCTATCAGCA
GATCGCTTGCTGGTCTTCCTGGTCTCGCCGCAGGAGTCATCAGCGGCGGA
AGGAACCGGAACGTGGCTCCCCTGCTTTCCGCAGGAACCAGCATCACTAG
CAGTGCCACTACCCAATGCTCCCGCATAATCAGTGCTTCCACTTGTTCGG
GTGTCCCCGCTAGACCGGCCGGAAACACGGACCATGCCTTCCCCTTTGTG
TCGTGCGCAGAACTCTCGGATGCCAGTGTTGCTCCCGCGGTACCTAGCCC
TTGTTGCGCAGCCAAAAAAACGCATATCTTGCTCCTCACGTCGACCATAC
CATCTTCTGCATGACCACGGCAGTACTCCGCCTTGCCGCCTGCCTTGCCG
AATGACGGCGCCTTGGTGCAGCCGCCGTGGGTGCAACTCTTGCTCCTCAC
GTCGACCATACCATCTTCTGCATGGCCACGGCAGTATTCCGCCTTGCCGC
C
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18552:710..1210+

>mRNA_L-elsbetiae_contig18552.5400.1 ID=mRNA_L-elsbetiae_contig18552.5400.1|Name=mRNA_L-elsbetiae_contig18552.5400.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig18552:710..1210+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGAGTCCGCGCTATCAGCAGATCGCTTGCTGGTCTTCCTGGTCTCGC
CGCAGGAGTCATCAGCGGCGGAAGGAACCGGAACGTGGCTCCCCTGCTTT
CCGCAGGAACCAGCATCACTAGCAGTGCCACTACCCAATGCTCCCGCATA
ATCAGTGCTTCCACTTGTTCGGGTGTCCCCGCTAGACCGGCCGGAAACAC
GGACCATGCCTTCCCCTTTGTGTCGTGCGCAGAACTCTCGGATGCCAGTG
TTGCTCCCGCGGTACCTAGCCCTTGTTGCGCAGCCAAAAAAACGCATATC
TTGCTCCTCACGTCGACCATACCATCTTCTGCATGAATGCGAGTCCGCGC
TATCAGCAGATCGCTTGCTGGTCTTCCTGGTCTCGCCGCAGGAGTCATCA
GCGGCGGAAGGAACCGGAACGTGGCTCCCCTGCTTTCCGCAGGAACCAGC
ATCACTAGCAGTGCCACTACCCAATGCTCCCGCATAATCAGTGCTTCCAC
TTGTTCGGGTGTCCCCGCTAGACCGGCCGGAAACACGGACCATGCCTTCC
CCTTTGTGTCGTGCGCAGAACTCTCGGATGCCAGTGTTGCTCCCGCGGTA
CCTAGCCCTTGTTGCGCAGCCAAAAAAACGCATATCTTGCTCCTCACGTC
GACCATACCATCTTCTGCATGA
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