mRNA_L-elsbetiae_contig18551.5399.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18551.5399.1
Unique NamemRNA_L-elsbetiae_contig18551.5399.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18551.5399.1 vs. uniprot
Match: D7G420_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G420_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 3.860e-21
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:  286 LSRSLDKRMMPRTQQMRDKEIEPRFGLHKWVVSTYTDKQFTRWLEGRGT 432
            LSRSLDKRM+PR QQMR+K+IEPRFG HKWVVSTYTDKQFTRWLEGRGT
Sbjct:  350 LSRSLDKRMLPRAQQMREKDIEPRFGPHKWVVSTYTDKQFTRWLEGRGT 398
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18551.5399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G420_ECTSI3.860e-2189.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18551contigL-elsbetiae_contig18551:381..2083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue1.9e-18
Seed eggNOG ortholog2880.D7G420
KEGG koko:K15031,ko:K15032
Hectar predicted targeting categoryother localisation
EggNOG free text desc.termination of mitochondrial transcription
EggNOG OGsKOG1267@1,KOG1267@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Exons3
Model size435
Cds size435
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18551.5399.1prot_L-elsbetiae_contig18551.5399.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18551 381..2083 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.64743-CDS-L-elsbetiae_contig18551:380..6201622815772.64743-CDS-L-elsbetiae_contig18551:380..620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18551 381..620 -
1691683092.5481439-CDS-L-elsbetiae_contig18551:380..6201691683092.5481439-CDS-L-elsbetiae_contig18551:380..620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18551 381..620 -
1622815772.657733-CDS-L-elsbetiae_contig18551:1159..12701622815772.657733-CDS-L-elsbetiae_contig18551:1159..1270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18551 1160..1270 -
1691683092.5601525-CDS-L-elsbetiae_contig18551:1159..12701691683092.5601525-CDS-L-elsbetiae_contig18551:1159..1270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18551 1160..1270 -
1622815772.673371-CDS-L-elsbetiae_contig18551:1999..20831622815772.673371-CDS-L-elsbetiae_contig18551:1999..2083Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18551 2000..2083 -
1691683092.5703483-CDS-L-elsbetiae_contig18551:1999..20831691683092.5703483-CDS-L-elsbetiae_contig18551:1999..2083Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18551 2000..2083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18551.5399.1

>prot_L-elsbetiae_contig18551.5399.1 ID=prot_L-elsbetiae_contig18551.5399.1|Name=mRNA_L-elsbetiae_contig18551.5399.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
VEQLVTTYPAVLSRSVEKNLEPKFKWLEERLGATQEEVSTLIKRFPLIFG
YSTTEASDHNSANASNLEPTVAFFTADLCGEQSEIRSAVMSCPSILSRSL
DKRMMPRTQQMRDKEIEPRFGLHKWVVSTYTDKQFTRWLEGRGT*
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mRNA from alignment at L-elsbetiae_contig18551:381..2083-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18551.5399.1 ID=mRNA_L-elsbetiae_contig18551.5399.1|Name=mRNA_L-elsbetiae_contig18551.5399.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1703bp|location=Sequence derived from alignment at L-elsbetiae_contig18551:381..2083- (Laminarionema elsbetiae ELsaHSoW15)
GTGGAACAGCTCGTCACAACGTACCCGGCGGTTTTGAGCCGCAGCGTGGA
GAAGAACTTGGAGCCCAAGTTCAAGTGGCTCGAGGTGAGTTATCCGTAGA
TTCGTCCCCTTTCTCGAGAGACCTGCTGCGAAAAAGTATGCAAGTAGTTT
GGGCATATATTTGCTGCTGTGTACGTGTGCGGCACTAAACCGCCGCGAAA
GAGTTTCGGGCAGGTAAGACCGTCGTCCAAAAGCATCAGCATCTCGTTTG
CACCCGGTATTTTTTTGCAGCCTCTAATTGTAGCGGCGTGATTTGGGGCG
AAAGAGAGACGGAGGATCGGAAACAGAAGCGAAGCAGGGATGCAGTACCG
TCGCGGCTCGATTTCGCGTGTTTTTAGTCCCCCCGTCGGGTGCTCGCCGG
CGCGTTGGGGGTTGTTGTTGAGGCGCTGATACTGCTGGTACCTTGCGGTG
TCGGTGCTTTTTATTTTGCAGTCGGTCTTGTTCTACTATTTTTTATTTTG
TTTTATTTTTCCCTCCCATCATTGGCTTATTCGTCGTCTGCCCCACTGGC
CCCACCCTCCACTACGACTAGCTAGACGACCCAACCGGGGTCACACAGGA
AGGGAGGGGGGTAGACCCCTCCTGCGGTGCCTGCCTGTGTTGGTTGGACA
TGGTTTGATCCGTGCTTTTTTAGATGATGATGCTACTCTTATAAAGCTGA
TGTCGGCCAGAGACGGTCGTCGTTTTTTCATTATTGCCGCAGCTGCCGTC
GCCTCCTTCTTAAGTTGATTAGTTTTGCCCGTTTCACCCTCGATCACGCC
GCCTTGCTGGTAGGAGCGACTTGGGGCTACTCAAGAGGAAGTCTCCACGC
TGATCAAGCGGTTCCCCCTGATCTTCGGGTATAGCACGACTGAGGCAAGC
GATCATAACAGCGCCAATGCAAGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTTTTATCAACACCCCCTGCTGTTGCAGCAAGCAACTAAAGCGACGTACC
GCATCGTTACCCGAAGTTTATATCCTCCACACAGCTCTCAGGGAGGAGTT
AGGGCGAGCAAGAGATGCCACGACAACGTATATAGGGTAAGGCAAGGCAG
GCAAGGAGCGACCCGGCGCGCTCTTGACGCGAATCCCGACGACGTACCGC
GCTCGCCCCTCAAGGCGTTGGCGGTACGCGAGAGTCTCGTTGGGTCTGAT
GACCCACTATCTGCGGGCATGGCATGCTCTTTTGCACGGTGTACGGTAGG
GGGGCGGCTTGACGTGGCGTCAAAGGCTGAACGGAGAAAGATACTTCAAA
ACTCAAACTCCCTTGTTTTTTTGTACGGGGAGGAACACACGGCACTGATT
ACCCCCCCCCCCAAAAAAAAAAAGCATTCGCGTAACCCCCAACGATTCCA
CCTTTGCAACACATGGCACTGATCGCGCAACCCCCCCCCGCCGGTGCTGC
AACACTTCGACAGAACCTGGAGCCGACCGTGGCGTTCTTCACGGCCGACC
TGTGCGGCGAGCAGTCGGAGATCCGGTCCGCCGTCATGTCCTGCCCGTCA
ATCCTGAGCCGCAGCCTGGACAAGCGCATGATGCCGAGGACCCAGCAGAT
GCGCGACAAGGAGATAGAGCCACGCTTCGGCCTGCACAAGTGGGTGGTAT
CCACCTACACGGACAAGCAGTTCACCCGCTGGCTCGAGGGCAGAGGCACG
TAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18551:381..2083-

>mRNA_L-elsbetiae_contig18551.5399.1 ID=mRNA_L-elsbetiae_contig18551.5399.1|Name=mRNA_L-elsbetiae_contig18551.5399.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig18551:381..2083- (Laminarionema elsbetiae ELsaHSoW15)
GTGGAACAGCTCGTCACAACGTACCCGGCGGTTTTGAGCCGCAGCGTGGA
GAAGAACTTGGAGCCCAAGTTCAAGTGGCTCGAGGTGGAACAGCTCGTCA
CAACGTACCCGGCGGTTTTGAGCCGCAGCGTGGAGAAGAACTTGGAGCCC
AAGTTCAAGTGGCTCGAGGAGCGACTTGGGGCTACTCAAGAGGAAGTCTC
CACGCTGATCAAGCGGTTCCCCCTGATCTTCGGGTATAGCACGACTGAGG
CAAGCGATCATAACAGCGCCAATGCAAGTGAGCGACTTGGGGCTACTCAA
GAGGAAGTCTCCACGCTGATCAAGCGGTTCCCCCTGATCTTCGGGTATAG
CACGACTGAGGCAAGCGATCATAACAGCGCCAATGCAAGTAACCTGGAGC
CGACCGTGGCGTTCTTCACGGCCGACCTGTGCGGCGAGCAGTCGGAGATC
CGGTCCGCCGTCATGTCCTGCCCGTCAATCCTGAGCCGCAGCCTGGACAA
GCGCATGATGCCGAGGACCCAGCAGATGCGCGACAAGGAGATAGAGCCAC
GCTTCGGCCTGCACAAGTGGGTGGTATCCACCTACACGGACAAGCAGTTC
ACCCGCTGGCTCGAGGGCAGAGGCACGTAAAACCTGGAGCCGACCGTGGC
GTTCTTCACGGCCGACCTGTGCGGCGAGCAGTCGGAGATCCGGTCCGCCG
TCATGTCCTGCCCGTCAATCCTGAGCCGCAGCCTGGACAAGCGCATGATG
CCGAGGACCCAGCAGATGCGCGACAAGGAGATAGAGCCACGCTTCGGCCT
GCACAAGTGGGTGGTATCCACCTACACGGACAAGCAGTTCACCCGCTGGC
TCGAGGGCAGAGGCACGTAA
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