mRNA_L-elsbetiae_contig18549.5397.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18549.5397.1
Unique NamemRNA_L-elsbetiae_contig18549.5397.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18549.5397.1 vs. uniprot
Match: D8LTF1_ECTSI (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTF1_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 1.310e-41
Identity = 65/88 (73.86%), Postives = 76/88 (86.36%), Query Frame = 1 
Query:   58 LPDSKVAYIARSKRDIAEHFGVAWSTMQPRLVGKVGSKPASSARVVAMPDGVEIELFQHVVWLCENGYPASWDSITALAWQLGKFTGM 321
            + DS+VAYIARSKRD+AEHFGVAWSTMQPRLVGKVG KPASSAR   +PD VE ELFQHV+WLCENG+  +WD+I A+AW+LGK  G+
Sbjct:    1 MDDSEVAYIARSKRDVAEHFGVAWSTMQPRLVGKVGGKPASSARATNLPDEVETELFQHVLWLCENGHSTNWDNIKAIAWKLGKMAGI 88
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BLAST of mRNA_L-elsbetiae_contig18549.5397.1 vs. uniprot
Match: A0A6H5JRX7_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRX7_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 6.650e-40
Identity = 66/88 (75.00%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:   58 LPDSKVAYIARSKRDIAEHFGVAWSTMQPRLVGKVGSKPASSARVVAMPDGVEIELFQHVVWLCENGYPASWDSITALAWQLGKFTGM 321
            + DS+VAYIARSKRD+AEHFGVAWSTMQPRLVGKVG KPASSAR   +PD VE ELFQHV+WLCENG+P +WD+I A+AW+LGK  G+
Sbjct:    1 MDDSEVAYIARSKRDVAEHFGVAWSTMQPRLVGKVGGKPASSARATNLPDEVETELFQHVLWLCENGHPTNWDNIKAIAWKLGKVAGI 88
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BLAST of mRNA_L-elsbetiae_contig18549.5397.1 vs. uniprot
Match: A0A835YWV1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWV1_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.800e-15
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:   22 AENSRREDADANLPDSKVAYIARSKRDIAEHFGVAWSTMQPRLVGKVGSKPASSARVVAMPDGVEIELFQHVVWLCENGYPASWDSITALAWQLGK 309
            AE+S R  A+  + DS    +  SKR+I+E+FG+AWST+QPRLVGKV    +SS+R   +PD  E  L Q V+W+ ++    +WD I   A  L +
Sbjct:  345 AESSTRGSAEPAMVDSDPVCLG-SKREISEYFGIAWSTLQPRLVGKVDQDASSSSRKTRLPDATERSLAQRVLWMVDHRVSVNWDGIKICADALAR 439
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18549.5397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTF1_ECTSI1.310e-4173.86HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JRX7_9PHAE6.650e-4075.00HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A835YWV1_9STRA6.800e-1542.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18549contigL-elsbetiae_contig18549:188..915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHomeodomain-like
Ec32 orthologEc-02_006110.1
Exons2
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.3630202-CDS-L-elsbetiae_contig18549:187..3371622815772.3630202-CDS-L-elsbetiae_contig18549:187..337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18549 188..337 -
1691683092.342501-CDS-L-elsbetiae_contig18549:187..3371691683092.342501-CDS-L-elsbetiae_contig18549:187..337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18549 188..337 -
1622815772.3768554-CDS-L-elsbetiae_contig18549:744..9151622815772.3768554-CDS-L-elsbetiae_contig18549:744..915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18549 745..915 -
1691683092.352738-CDS-L-elsbetiae_contig18549:744..9151691683092.352738-CDS-L-elsbetiae_contig18549:744..915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18549 745..915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18549.5397.1prot_L-elsbetiae_contig18549.5397.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18549 188..915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18549.5397.1

>prot_L-elsbetiae_contig18549.5397.1 ID=prot_L-elsbetiae_contig18549.5397.1|Name=mRNA_L-elsbetiae_contig18549.5397.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
RGLSAEPAENSRREDADANLPDSKVAYIARSKRDIAEHFGVAWSTMQPRL
VGKVGSKPASSARVVAMPDGVEIELFQHVVWLCENGYPASWDSITALAWQ
LGKFTGM
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mRNA from alignment at L-elsbetiae_contig18549:188..915-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18549.5397.1 ID=mRNA_L-elsbetiae_contig18549.5397.1|Name=mRNA_L-elsbetiae_contig18549.5397.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=728bp|location=Sequence derived from alignment at L-elsbetiae_contig18549:188..915- (Laminarionema elsbetiae ELsaHSoW15)
AGGGGGCTGTCCGCTGAGCCCGCCGAAAACTCGCGCCGAGAAGATGCTGA
CGCCAATCTCCCCGACTCCAAAGTGGCCTACATCGCCAGGTCGAAGCGGG
ACATTGCCGAGCACTTCGGGGTTGCCTGGTCTACCATGCAGCCGCGGCTT
GTGGGAAAGGTCGGATCAAAGGTGACGACGGCACATCAAAGCAAAGTGAC
GAGTGTTTACGTAGAGTAAGCACGAGCAACGTGTGCCATGTGTACTTGTG
TGACTTGGGCCGTGATGAGCTGTTTTGAGCAGTGATATCTGTCCTCACAA
GAGTGACAAAGGCACTCGCTGCCAGCAAGACACTCGGCCGTATCTCCGCG
TTGAACAAGCCAGCCGCATAGGTGCTACCACTACCACTACTACTACTACT
ACTACTACTGTTATACTTTTTAAGAACCTGTGACAAGGCGCGGTCTCTTA
CCATTTTGTTCAGTGCATTGCCTCGGCCGGCGCGCATAGTCTAGATAGAC
ATCGTAGAACGTACTTTTATTGAAAGGTGTGCTCTCTGTTTGCTCCTGCG
ACGAAATTTGGATTGACCGTCAAAGCAGCCGGCATCTTCAGCGCGCGTCG
TCGCCATGCCGGACGGTGTCGAGATCGAGCTCTTCCAGCACGTGGTGTGG
CTGTGCGAGAACGGTTACCCGGCCAGCTGGGACAGCATCACGGCTCTCGC
CTGGCAGCTCGGAAAGTTCACCGGCATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18549:188..915-

>mRNA_L-elsbetiae_contig18549.5397.1 ID=mRNA_L-elsbetiae_contig18549.5397.1|Name=mRNA_L-elsbetiae_contig18549.5397.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig18549:188..915- (Laminarionema elsbetiae ELsaHSoW15)
AGGGGGCTGTCCGCTGAGCCCGCCGAAAACTCGCGCCGAGAAGATGCTGA
CGCCAATCTCCCCGACTCCAAAGTGGCCTACATCGCCAGGTCGAAGCGGG
ACATTGCCGAGCACTTCGGGGTTGCCTGGTCTACCATGCAGCCGCGGCTT
GTGGGAAAGGTCGGATCAAAGAGGGGGCTGTCCGCTGAGCCCGCCGAAAA
CTCGCGCCGAGAAGATGCTGACGCCAATCTCCCCGACTCCAAAGTGGCCT
ACATCGCCAGGTCGAAGCGGGACATTGCCGAGCACTTCGGGGTTGCCTGG
TCTACCATGCAGCCGCGGCTTGTGGGAAAGGTCGGATCAAAGCCGGCATC
TTCAGCGCGCGTCGTCGCCATGCCGGACGGTGTCGAGATCGAGCTCTTCC
AGCACGTGGTGTGGCTGTGCGAGAACGGTTACCCGGCCAGCTGGGACAGC
ATCACGGCTCTCGCCTGGCAGCTCGGAAAGTTCACCGGCATGCCGGCATC
TTCAGCGCGCGTCGTCGCCATGCCGGACGGTGTCGAGATCGAGCTCTTCC
AGCACGTGGTGTGGCTGTGCGAGAACGGTTACCCGGCCAGCTGGGACAGC
ATCACGGCTCTCGCCTGGCAGCTCGGAAAGTTCACCGGCATG
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