mRNA_L-elsbetiae_contig18532.5393.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18532.5393.1
Unique NamemRNA_L-elsbetiae_contig18532.5393.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18532.5393.1 vs. uniprot
Match: D8LJJ0_ECTSI (MMS19 nucleotide excision repair protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ0_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 4.360e-9
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   31 EGTAAFAVLSALRRIGLRRPEHAAAVLGTAVPPLLEQLHQPSPASPA 171
            EGTAA AVL+ALR IGLRRPE+A AVL TAVPPLL+QL    P  PA
Sbjct:  659 EGTAALAVLTALRSIGLRRPEYARAVLDTAVPPLLKQLPHARPPPPA 705
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18532.5393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJJ0_ECTSI4.360e-972.34MMS19 nucleotide excision repair protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18532contigL-elsbetiae_contig18532:1094..1774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue4.7e-07
Seed eggNOG ortholog2880.D8LJJ0
Preferred nameMMS19
KEGG koko:K15075
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000160,GO:0000228,GO:0000428,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003712,GO:0003713,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0005694,GO:0005720,GO:0005721,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006289,GO:0006351,GO:0006355,GO:0006725,GO:0006790,GO:0006807,GO:0006950,GO:0006974,GO:0007059,GO:0007154,GO:0007165,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010569,GO:0010604,GO:0010628,GO:0015630,GO:0016043,GO:0016070,GO:0016226,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0022607,GO:0023052,GO:0030159,GO:0030331,GO:0030674,GO:0030880,GO:0031163,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031618,GO:0031974,GO:0031981,GO:0032774,GO:0032806,GO:0032947,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035257,GO:0035258,GO:0035556,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0045739,GO:0045893,GO:0045911,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051186,GO:0051252,GO:0051254,GO:0051427,GO:0051604,GO:0051716,GO:0055029,GO:0060090,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0071817,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090575,GO:0097361,GO:0097428,GO:0097659,GO:0098687,GO:0106035,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1905168,GO:1990234,GO:2000112,GO:2000779,GO:2000781,GO:2001020,GO:2001022,GO:2001141
EggNOG free text desc.positive regulation of double-strand break repair via homologous recombination
EggNOG OGsKOG1967@1,KOG1967@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Exons2
Model size269
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.0329049-CDS-L-elsbetiae_contig18532:1095..12941622815772.0329049-CDS-L-elsbetiae_contig18532:1095..1294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18532 1096..1294 -
1691683092.1152165-CDS-L-elsbetiae_contig18532:1095..12941691683092.1152165-CDS-L-elsbetiae_contig18532:1095..1294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18532 1096..1294 -
1622815772.045133-CDS-L-elsbetiae_contig18532:1706..17741622815772.045133-CDS-L-elsbetiae_contig18532:1706..1774Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18532 1707..1774 -
1691683092.1307955-CDS-L-elsbetiae_contig18532:1706..17741691683092.1307955-CDS-L-elsbetiae_contig18532:1706..1774Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18532 1707..1774 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18532.5393.1prot_L-elsbetiae_contig18532.5393.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18532 1096..1774 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18532.5393.1

>prot_L-elsbetiae_contig18532.5393.1 ID=prot_L-elsbetiae_contig18532.5393.1|Name=mRNA_L-elsbetiae_contig18532.5393.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
AAAAGGVCADEGTAAFAVLSALRRIGLRRPEHAAAVLGTAVPPLLEQLHQ
PSPASPASGGEDAGSAAAAATTTMTSGTHPLPPPAGTTT
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mRNA from alignment at L-elsbetiae_contig18532:1094..1774-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18532.5393.1 ID=mRNA_L-elsbetiae_contig18532.5393.1|Name=mRNA_L-elsbetiae_contig18532.5393.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=681bp|location=Sequence derived from alignment at L-elsbetiae_contig18532:1094..1774- (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGCGGCGGGAGGGGTTTGTGCGGACGAGGGCACGGCCGCGTTTGC
TGTTCTCTCGGCGCTGAGGTAATGATGAGGACAAATAAGGGCGGTTGTTT
ACGTCGTCAGGTGCCGCGGTTGGAGAGGGTCGGTACACGAGATAATTTTC
TTTTTTTGTTTCCATCTCTTCTCTTTCTTCCTGCGTGTGTTTGTATGTGT
GTGTATCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTGCGCCT
CTTCCTCCATTTCTCGTGGCGCTTCGGTTCGCTCGTCACATGTAGATATT
TAGGAATGAAGCAACACACTTCTCTCCCTTTCATCCCTTTTATTTATCTC
CTGCTATAAATTTAGGAATTTATAATATATAGAATTATATACTTCGTTAC
GTAACCATAACCTGCACACGTGTTGTATATTTTTTGGTTGCCGTTTTGCC
CCTCCCGCCTCGACCCGGCGGCAAAAAAAGGCGCATCGGCCTCCGGCGAC
CAGAGCACGCCGCCGCCGTGCTCGGCACCGCGGTCCCGCCGCTCCTCGAG
CAGCTGCACCAGCCGTCCCCGGCTTCCCCCGCCTCCGGCGGGGAGGATGC
CGGGAGTGCGGCGGCGGCGGCGACAACGACGATGACATCCGGAACGCACC
CCTTGCCTCCACCTGCCGGGACAACGACAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18532:1094..1774-

>mRNA_L-elsbetiae_contig18532.5393.1 ID=mRNA_L-elsbetiae_contig18532.5393.1|Name=mRNA_L-elsbetiae_contig18532.5393.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig18532:1094..1774- (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGCGGCGGGAGGGGTTTGTGCGGACGAGGGCACGGCCGCGTTTGC
TGTTCTCTCGGCGCTGAGGCGGCGGCGGCGGGAGGGGTTTGTGCGGACGA
GGGCACGGCCGCGTTTGCTGTTCTCTCGGCGCTGAGGCGCATCGGCCTCC
GGCGACCAGAGCACGCCGCCGCCGTGCTCGGCACCGCGGTCCCGCCGCTC
CTCGAGCAGCTGCACCAGCCGTCCCCGGCTTCCCCCGCCTCCGGCGGGGA
GGATGCCGGGAGTGCGGCGGCGGCGGCGACAACGACGATGACATCCGGAA
CGCACCCCTTGCCTCCACCTGCCGGGACAACGACAGCGCATCGGCCTCCG
GCGACCAGAGCACGCCGCCGCCGTGCTCGGCACCGCGGTCCCGCCGCTCC
TCGAGCAGCTGCACCAGCCGTCCCCGGCTTCCCCCGCCTCCGGCGGGGAG
GATGCCGGGAGTGCGGCGGCGGCGGCGACAACGACGATGACATCCGGAAC
GCACCCCTTGCCTCCACCTGCCGGGACAACGACA
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