mRNA_L-elsbetiae_contig185.5379.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig185.5379.1 vs. uniprot
Match: D8LBW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBW1_ECTSI) HSP 1 Score: 349 bits (896), Expect = 5.270e-110 Identity = 233/497 (46.88%), Postives = 283/497 (56.94%), Query Frame = 1 Query: 1 QQQQQQGPLHRRPLKGMI-----EDNAVIALPDSWGRGSGPTFAPKGVGPVLEPPHPPTRPTKPCWPTRAIGASALRYVGIVRREKGDIDGAGPAGEVPTVSWPEHAAMETGDVVITVEHCHGCQRHRMTTRHDPEAYLRQANAVRELLIEVLRETPIRLAVVLKKAIIRPRALPRSGRGGSGTAS-----AVRQWRVGAFEVQVAARHPSQAHLLHVRVVHSKLASGRWPRLETDARVPNRVKATLASWGFESNRRKVG--RSADAGLDGEAGAGNETVSGQHRPPPRTHISWEFDNRNWLQCAAAPTTVPS-----PESNIDRNR-NPSNNSHGTGKTRVGQASIAASSNDDAEKRRGLAGPHGNPEDVGTGTIAKFNLGEGSPSA-----------------------GRSTGGSGSAAGAVANEVTGKSFVAE-GRDGVGDPRTAGEGESTSTADENEYGSDFASQ-DASSVEEVDE-SNAISEGTPPLVLPR 1359 QQQQ QGPL RRPL G D+ L DSWGRG GP FA +G GP LEPP PP RPT+PCWPT ++ AS LRY+ VR EKGD G A VPTVSWPEHA ME GDVV+TVEHCHGC RHRMTTRHDPE YL ANAV+ELLIE LRE P+RLAVVLKK+ +R R L G G +R+ RVGA EVQVAARHP++ HLLH +V+HSKLASGRWPRL T +PNR++ L SWGFE++ R++ R + DG AG +T S QH P PR I WEFD+R+ ++ TT P PE N + N ++ S G +T V A++N D GR T G+ AAG +A E + K+ A GRD VG P A EG + +A+E+EY +DFASQ + S VEEVDE ++ + G PP V P+ Sbjct: 23 QQQQHQGPLRRRPLSGKTTERDASDDYGGILDDSWGRGGGPRFARRGGGPRLEPPRPPKRPTRPCWPTPSVEASVLRYIETVREEKGD----GLASAVPTVSWPEHAEMEKGDVVVTVEHCHGCHRHRMTTRHDPEVYLSHANAVKELLIESLRELPVRLAVVLKKSPLRSRTLSPGGDGXXXXXXXXXXXTLRRRRVGALEVQVAARHPNRGHLLHAQVIHSKLASGRWPRLGTSVCLPNRLRRALESWGFETDMREIDGRRKHENSTDG---AGADTPSAQHPPRPRVRIPWEFDHRDRMRRGDEVTTSPHQGARIPEKNAHTDGYNDNSKSRGGARTTVATGKEVATNNHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGRETEGT-VAAGVLAQENSSKAAEAGVGRDAVGGPVRAEEGGNDISAEEDEYDADFASQAEDSLVEEVDEDADDAAPGPPPFVAPK 511
BLAST of mRNA_L-elsbetiae_contig185.5379.1 vs. uniprot
Match: A0A6H5KVB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVB5_9PHAE) HSP 1 Score: 195 bits (496), Expect = 7.320e-50 Identity = 112/231 (48.48%), Postives = 135/231 (58.44%), Query Frame = 1 Query: 256 GAGPAGEVPTVSWPEHAAMETGDVVITVEHCHGCQRHRMTTRHDPE-------------------------------------------AYLRQANAVRELLIEVLRETPIRLAVVLKKAIIRPRALPRSGRGGSGTAS-----AVRQWRVGAFEVQVAARHPSQAHLLHVRVVHSKLASGRWPRLETDARVPNRVKATLASWGFESNRRKVGRSA-DAGLDGEAGAGNET 801 G G A VP VSWPEHA ME GDVV+TVEHCHGC RHRMTTRHDP+ YL ANAV+ELLIE LRE P+RLAVVLKK+ +R R L G G +R+ RVGA EVQVAARHP++ H LH +V+HSKLASGRWPRL T +PNRV+ L SWGF++++R++G + D + GEAG +T Sbjct: 2 GDGLASAVPMVSWPEHAEMEKGDVVVTVEHCHGCHRHRMTTRHDPQPIQPSNPSPLVRIGDAIHCIGQGLYGDDPPATCRLLYVPFDPKVYLSHANAVKELLIESLRELPVRLAVVLKKSPLRSRTLSPGGDGXXXXXXXXXXXTLRRRRVGALEVQVAARHPNRGHQLHAQVIHSKLASGRWPRLGTSTCLPNRVRRALESWGFKTDKREIGGTRKDENITGEAGVVTKT 232
BLAST of mRNA_L-elsbetiae_contig185.5379.1 vs. uniprot
Match: D7FVI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI6_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 1.160e-10 Identity = 75/248 (30.24%), Postives = 103/248 (41.53%), Query Frame = 1 Query: 271 GEVPTVSWPEHAAMETGDVVITVEHCHGCQRHRMTTRHDPEAYLRQANAVR----ELLIEVLRETPI------------RLAVVLKKAIIRPRALPRSGRGGSGTASAVRQWRVGAFEVQVAA--------------------RHPSQ---AHLLHVR--VVHSKLASGRWPRLETDARVPNRVKATLASWGF------ESNRRKVGR-SADAGLD---GEAGAGNETVSGQHRPPPRTHISWEFDNR 861 G P + W E M GDV++TVEHC C RHRM+ H+ +AY+R+A A++ + LI R + + +++ S GG G RVGAFEVQV A R S A H+R V SKLASG+WP E RV ++ TL WG E R V R S+ +G D +G N +G+ H++ E D + Sbjct: 84 GMPPPLRWSEEKHMVAGDVLVTVEHCAACSRHRMSLHHNADAYIRRAAAMKTSAEQALIGAGRHPTAGGQGRGPGAGAQSMRLSQTTSVVTKPTTEASASGGVG--------RVGAFEVQVTACLLSRQAPHAVSAVPRSGQVRQTSPDVIAGAGHIRSATVSSKLASGKWPHPE---RVARKIVQTLQQWGALVPQQQEQQRAPVPRCSSMSGTDHPSNASGGNNRLGNGESHASATGHVAQEPDTQ 320
BLAST of mRNA_L-elsbetiae_contig185.5379.1 vs. uniprot
Match: A0A1R2D152_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2D152_9CILI) HSP 1 Score: 64.7 bits (156), Expect = 4.070e-7 Identity = 43/124 (34.68%), Postives = 66/124 (53.23%), Query Frame = 1 Query: 292 WPEHAAMETGDVVITVEHCHGCQRHRMTTRHDPEAYLRQANAVRELLIEVLRETPIRLAVVLKKAIIRPRALPRSGRGGSGTASAVRQWRVGAFEVQVAARHPSQAHLLHVRVVHSKLASGRWP 663 + E+ ++ DV++T+EHC C+ H +TRHDP Y A +++ VL P + +L K + + P S + R+GAFEVQV+ + + L+V V+HSKLAS RWP Sbjct: 78 YREYNFLKDNDVLLTIEHCDNCEEHSSSTRHDPAKYAFYAQSIKNA---VLARYP--MVKILMKPV--SKLDPESNKK-----------RMGAFEVQVSNKTKGK---LNVNVLHSKLASRRWP 180
BLAST of mRNA_L-elsbetiae_contig185.5379.1 vs. uniprot
Match: A0A7S1TTR0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTR0_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 1.430e-6 Identity = 53/187 (28.34%), Postives = 80/187 (42.78%), Query Frame = 1 Query: 142 EPPHPPTRPTKPCWPTRAIGASALRYVGIVRRE-----KGDIDGAGPAGEVPTVSW---PEHAAM-ETGDVVITVEHCHGCQRHRMTTRHDPEAYLRQANAVRELLIEVL----------RETPIRLAVVLKKAIIRPRALPRSGRGGSGTASAVRQWRVGAFEVQVAARHPSQAHLLHVRVVHSKL 645 EPP P +P +P + S ++ +V E K + G P G W PE+A++ + G V++TVEHCH C H M+T+HD YL A+ + E L + + TP+ L K R+GA +VQ+AA + +H R++HSKL Sbjct: 304 EPPPVRIPPGRPKYPNLNVEQSVREFMQLVSNERMSNGKAPLPGYEPRGRPEDKLWYSFPEYASLSKNGQVLVTVEHCHHCAMHSMSTKHDESMYLSIAHRICEHLFKAFGNDYDFRALPKPTPLELVAAKK--------------------------RLGALDVQIAAVVRGR---VHTRMLHSKL 461
BLAST of mRNA_L-elsbetiae_contig185.5379.1 vs. uniprot
Match: A0A7R9YD28_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD28_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 2.930e-5 Identity = 42/129 (32.56%), Postives = 59/129 (45.74%), Query Frame = 1 Query: 295 PEHAAMETGDVVITVEHCHGCQRHRMTTRHDPEAY------LRQANAVRELLIEVLRETPIRLAVVLKKAIIRPRALPRSGRGGSGTASAVRQWRVGAFEVQVAARHPSQAHLLHVRVVHSKLASGRWP 663 PE GDV++ +EHCH C +H T RHD + + A A R L +R +R+A L+ + R R+GAFEVQV + S + RV+HSKLA+ +WP Sbjct: 562 PEQRRAAIGDVLLMIEHCHSCWKHSRTLRHDATTFQSYCADVEAAVAARLQLGRPIRLLAMRIAADLENSHSR---------------------RLGAFEVQVFVKGASY---VEKRVLHSKLATSKWP 666 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig185.5379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig185.5379.1 >prot_L-elsbetiae_contig185.5379.1 ID=prot_L-elsbetiae_contig185.5379.1|Name=mRNA_L-elsbetiae_contig185.5379.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=479bp MIEDNAVIALPDSWGRGSGPTFAPKGVGPVLEPPHPPTRPTKPCWPTRAIback to top mRNA from alignment at L-elsbetiae_contig185:6427..14723+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig185.5379.1 ID=mRNA_L-elsbetiae_contig185.5379.1|Name=mRNA_L-elsbetiae_contig185.5379.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8297bp|location=Sequence derived from alignment at L-elsbetiae_contig185:6427..14723+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig185:6427..14723+ >mRNA_L-elsbetiae_contig185.5379.1 ID=mRNA_L-elsbetiae_contig185.5379.1|Name=mRNA_L-elsbetiae_contig185.5379.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2874bp|location=Sequence derived from alignment at L-elsbetiae_contig185:6427..14723+ (Laminarionema elsbetiae ELsaHSoW15)back to top |