mRNA_L-elsbetiae_contig1849.5376.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1849.5376.1
Unique NamemRNA_L-elsbetiae_contig1849.5376.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1849.5376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1849contigL-elsbetiae_contig1849:19032..21087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size345
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1849.5376.1prot_L-elsbetiae_contig1849.5376.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1849 19032..20961 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815770.2127907-CDS-L-elsbetiae_contig1849:19031..191071622815770.2127907-CDS-L-elsbetiae_contig1849:19031..19107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 19032..19107 -
1691683090.9185195-CDS-L-elsbetiae_contig1849:19031..191071691683090.9185195-CDS-L-elsbetiae_contig1849:19031..19107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 19032..19107 -
1622815770.224846-CDS-L-elsbetiae_contig1849:19519..196381622815770.224846-CDS-L-elsbetiae_contig1849:19519..19638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 19520..19638 -
1691683090.927885-CDS-L-elsbetiae_contig1849:19519..196381691683090.927885-CDS-L-elsbetiae_contig1849:19519..19638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 19520..19638 -
1622815770.2387516-CDS-L-elsbetiae_contig1849:20937..209611622815770.2387516-CDS-L-elsbetiae_contig1849:20937..20961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 20938..20961 -
1691683090.93695-CDS-L-elsbetiae_contig1849:20937..209611691683090.93695-CDS-L-elsbetiae_contig1849:20937..20961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 20938..20961 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815770.2505188-UTR-L-elsbetiae_contig1849:20961..210871622815770.2505188-UTR-L-elsbetiae_contig1849:20961..21087Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1849 20962..21087 -
1691683090.9461026-UTR-L-elsbetiae_contig1849:20961..210871691683090.9461026-UTR-L-elsbetiae_contig1849:20961..21087Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1849 20962..21087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1849.5376.1

>prot_L-elsbetiae_contig1849.5376.1 ID=prot_L-elsbetiae_contig1849.5376.1|Name=mRNA_L-elsbetiae_contig1849.5376.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
MSFREAVREEDEDSDDSGGSNDGWGLIQRACRYYESGSFQGELQDFRREH
SKEFKDAVEEEGKIGDHTHTMR*
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mRNA from alignment at L-elsbetiae_contig1849:19032..21087-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1849.5376.1 ID=mRNA_L-elsbetiae_contig1849.5376.1|Name=mRNA_L-elsbetiae_contig1849.5376.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2056bp|location=Sequence derived from alignment at L-elsbetiae_contig1849:19032..21087- (Laminarionema elsbetiae ELsaHSoW15)
CTCATCTTCTCCCTCCCTCTCTTGAGGGTGTTATAATATTGGTGGGCACA
CCGCGCTCTTCTGGACATTCTGCAGCAGCACACGCGGTCCATTCTCAAAA
GAGAACACCTCCCAAACGGCGTGGGTATGAGCTTTCGAGAGGCAGTACGG
GTGGGTGGGCTTATTGTGCAAAGATATCTTACTGCACACATGGATCTGTT
GAGATGTTATCTTTGCGTCGGAATGTCTTAGCATCTTTGGACGTCCTCGA
CGACGAGACAGAGGCTGAGCTCCCTGAGCTCCGAGCACTAGTTAGGAATG
AGCCGCAACCAACCAGCACCGGCTCAATACCTTGCAGTAGTCTGACCAGT
CACACCACCACCCGCGGACCCACAGCCCCAACCCCACCAATCCACTGAGC
AGGAATGACGCGGATTGTCACGACATGCGGTAACTTGGTTTCAGTTGATG
CCACTGGCACACCGTTGTGGCTCGAGGTCCATTCTCTGCGTTCTGGCGAG
AAAACCAATTTCTGTCAGCACGCGACTCTCCCTGCCTGCTGGTGTGTGTG
GAGCTGTGTGCGAGAGCTTACGTTCGGCTGTCACCGGACTCTCTGTCTCT
CTGTCTCTGTCTCTCTCTCTCGCACACACAAACACACACACCGATTTTGA
CTCTTTTCCCTTGGTGAAAACGAGGGTTCGAACAGATCAATGTAGATCTA
GAGAGTAGAGAGTAGATAGCACGAGCGAGGTTTTCTGGTCAGTGAACCGA
AGCCGACCTTCCCCCGCCAGTGTCTTCCCCCGCCAATGCCGTCTCGCTCT
TCCCTCTTCCTAGTGTAGGAACTATATGCTACCCCTCTCTGTGGTCTCTG
CCTCAATTTGGGTGCACAAAGACAGCGAGACTGTCCCAATACAGGATCTC
CGGTTGGTATCCTTTCGTCGTGTGACACTCCGGGGGGTTGCTAGGATCTG
CGAAATGAATTCGGACAAACGACCACGAAGCACGGTCATCTCTTGTCGGG
GCACAGCTAAACAGGCGTGACGAACATTTCCTAATTTATCTCCCCTCTCA
GAGGGCAACAGATCGTCAATCGGTGCTCTATAGAGTTTGTTCTGGCCGAA
AAGGATGGTCATATTTGACGGTCGTAAATCAAGTTAAGAGGGCGCTACAC
GCGATCGGAAGAACATTTGGCCTATGTTTAGACTAGATCCTTTTTTTTTC
CTCCTGGGATGAAGGGGAAAAAAGGTCACGGCTTCACCGCTCCGCGGCCC
ATTTTAATAAAAAAAAACGGCGATGAAAGAGAGGCAAACGGGCAATGTGC
AAGGGTGGTTGGTACCCCGAGCGGGACTTGCGGCGCTTCTGCTATCCGCG
CACAGAGTGTTTATAGGATTCCTCGTCCACATCGCACACGGCGGTTGCCT
GGTCATCCAACAGTACAGAGTTTGCTCTGCGAAAAATTTAACGCTGCAGG
AGGAAGACGAGGACAGCGATGATAGCGGTGGCAGTAACGACGGATGGGGC
CTCATACAACGAGCGTGTCGCTATTATGAGTCCGGCTCATTTCAGGGGGA
ACTTCAAGACTTTCGAAGGTAAAATCCTGGGTCTGAAGTGCATCCTACAA
CAGAGTATGCGTGGAGAACAGCCGGTACGGCCTTTCATGTCTATTTAGGT
AACTGTACTTAGGCCACGTGGGTAGTGTTGATCTCTGAGTTAAACCCTGA
CAACCTCAAGCGTGCCTCGCTCTTCCGGAGACATTCAAAATGTCGAGGCT
TGCTGTCTTTATGTGCGTCTTCCGACAGAGAAAATGATATTTCGCTCATT
TCGTATGTACCATCCCACCCTTATGCTGCGATGAAGCGCATTGGCACGTG
CTTTGCTTCTCAAAACGTTTTTTTTTCAAATATCAACCGTCGACGCCCAA
TGGAAAACGTCTTGCGCTATTTACGAACACCACATTGTCGTTTTTTGTAT
TGTTTATATCTTAAACTTTGCTTCCCAAAGGGAGCACTCAAAGGAGTTTA
AGGATGCTGTCGAGGAGGAAGGAAAGATCGGAGACCACACACACACAATG
AGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1849:19032..21087-

>mRNA_L-elsbetiae_contig1849.5376.1 ID=mRNA_L-elsbetiae_contig1849.5376.1|Name=mRNA_L-elsbetiae_contig1849.5376.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig1849:19032..21087- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCTTTCGAGAGGCAGTACGGATGAGCTTTCGAGAGGCAGTACGGGA
GGAAGACGAGGACAGCGATGATAGCGGTGGCAGTAACGACGGATGGGGCC
TCATACAACGAGCGTGTCGCTATTATGAGTCCGGCTCATTTCAGGGGGAA
CTTCAAGACTTTCGAAGGAGGAAGACGAGGACAGCGATGATAGCGGTGGC
AGTAACGACGGATGGGGCCTCATACAACGAGCGTGTCGCTATTATGAGTC
CGGCTCATTTCAGGGGGAACTTCAAGACTTTCGAAGGGAGCACTCAAAGG
AGTTTAAGGATGCTGTCGAGGAGGAAGGAAAGATCGGAGACCACACACAC
ACAATGAGGTAAGGAGCACTCAAAGGAGTTTAAGGATGCTGTCGAGGAGG
AAGGAAAGATCGGAGACCACACACACACAATGAGGTAA
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