mRNA_L-elsbetiae_contig1849.5374.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1849.5374.1
Unique NamemRNA_L-elsbetiae_contig1849.5374.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1849.5374.1 vs. uniprot
Match: A0A6H5JKS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS7_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 5.140e-49
Identity = 84/93 (90.32%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:    1 MASGFGKNKVGRCYSIFSTFETCMNTEPDSTVCYDLRKQYFNCLHLPSVNTMSEKQMDFMEERKDVLVLASKALESAGGASGSAPAKPPGESS 279
            MASGFGKNKVGRCYSIFS FETCMNTEPDS+VCYD RKQYFNCLHLP+VNTMSEKQMDFMEERKD LVLASKAL+S  GASGSAPAKPPGE S
Sbjct:    1 MASGFGKNKVGRCYSIFSVFETCMNTEPDSSVCYDFRKQYFNCLHLPTVNTMSEKQMDFMEERKDTLVLASKALQS--GASGSAPAKPPGEES 91
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BLAST of mRNA_L-elsbetiae_contig1849.5374.1 vs. uniprot
Match: D7G067_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G067_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.030e-29
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = 1 
Query:   73 NTEPDSTVCYDLRKQYFNCLHLPSVNTMSEKQMDFMEERKDVLVLASKALESAGGASGSAPAKPPGESS 279
            NTEPDS+VCYD RKQYFNCLHLP+VNTMSEKQMDFMEERKD LVLASKAL+S  GASGSAPAKPPGE S
Sbjct:   49 NTEPDSSVCYDFRKQYFNCLHLPTVNTMSEKQMDFMEERKDTLVLASKALQS--GASGSAPAKPPGEES 115
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1849.5374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKS7_9PHAE5.140e-4990.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G067_ECTSI1.030e-2988.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1849contigL-elsbetiae_contig1849:14132..16763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_004000.1
Exons3
Model size926
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1849.5374.1prot_L-elsbetiae_contig1849.5374.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1849 14132..16122 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815770.3292506-CDS-L-elsbetiae_contig1849:14131..142031622815770.3292506-CDS-L-elsbetiae_contig1849:14131..14203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 14132..14203 +
1691683090.9794192-CDS-L-elsbetiae_contig1849:14131..142031691683090.9794192-CDS-L-elsbetiae_contig1849:14131..14203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 14132..14203 +
1622815770.3413184-CDS-L-elsbetiae_contig1849:15284..153651622815770.3413184-CDS-L-elsbetiae_contig1849:15284..15365Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 15285..15365 +
1691683090.9905987-CDS-L-elsbetiae_contig1849:15284..153651691683090.9905987-CDS-L-elsbetiae_contig1849:15284..15365Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 15285..15365 +
1622815770.3513954-CDS-L-elsbetiae_contig1849:15990..161221622815770.3513954-CDS-L-elsbetiae_contig1849:15990..16122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 15991..16122 +
1691683091.0001068-CDS-L-elsbetiae_contig1849:15990..161221691683091.0001068-CDS-L-elsbetiae_contig1849:15990..16122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 15991..16122 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815770.361937-UTR-L-elsbetiae_contig1849:16122..167631622815770.361937-UTR-L-elsbetiae_contig1849:16122..16763Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1849 16123..16763 +
1691683091.0110826-UTR-L-elsbetiae_contig1849:16122..167631691683091.0110826-UTR-L-elsbetiae_contig1849:16122..16763Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1849 16123..16763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1849.5374.1

>prot_L-elsbetiae_contig1849.5374.1 ID=prot_L-elsbetiae_contig1849.5374.1|Name=mRNA_L-elsbetiae_contig1849.5374.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
MASGFGKNKVGRCYSIFSTFETCMNTEPDSTVCYDLRKQYFNCLHLPSVN
TMSEKQMDFMEERKDVLVLASKALESAGGASGSAPAKPPGESSA*
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mRNA from alignment at L-elsbetiae_contig1849:14132..16763+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1849.5374.1 ID=mRNA_L-elsbetiae_contig1849.5374.1|Name=mRNA_L-elsbetiae_contig1849.5374.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2632bp|location=Sequence derived from alignment at L-elsbetiae_contig1849:14132..16763+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGAGCGGTTTCGGAAAGAACAAGGTTGGGAGGTGCTACTCGATATT
CTCTACATTCGAAACGTGCATGGTGAGTGAATAAGATTCTAAACGCGCAC
GTTGTCAAGCAAAAAACCGGCACGGTCGAGGATGCCTAATCCTTGGAGGG
TCTTGCTGCTGCCACTTGGAGACAGAGTAAGAGGCAGTGCTCTTATTCTC
ATAGTCAATATCTCGAAGTTCTGCTAGGGATTGCCCACAAATAGTTAGGT
ACGACGACGGGTGCTCCTCTAGGGCAACAGGCAGGGCCTTGCATCCAATA
CGAGTAAGCAAAGCAGTTTGCAGTGTCTGCATACCAGACAGAAACTAGAG
CTCTTTGAACACACCAGCGAACACGCGCCATCTGGTCAACATATTGGTAG
ACTTCGTGTAGTACTCATAGTGCTATTTTGTGTGATTGTAGCCCTCGGGC
TGGCTGTGAGAGCTGCCGTTTAGTCTGTAGCGCTCCTAGCGAAAAGCGAG
CGCAATATTCCTGAACTCGCTGCATTTTGCATATTACGAAGTACTTCGTA
AGTCTATGATACTGGTACATAGATAAATCGGCGTCGCTTCCGAAAAAAAC
GGCATGGCGTCGCATCATGGGCGATTGTACATACAACATCCACATATAGC
TACTATAGTAATTCACGGGCCCAACCGAAGCCATAGTCGTGCATATCGAC
GATGGTGTGCAAGACTTGGGGACAGCAATCGCGGGGGGAGGTTCGAAACT
CGTTGGGTTACGGCAGCAGTTTCGTGGCCCTCCCTATTTGTGGAGACGCC
GCGCATCTTCTGCCAGCTTGCCTAAATGTACAACCAATACAGCGTGGTGC
GGTGAGGGGGGAACGATGGTACCCACATACATATGTACCTCTCGTCGCCC
CCTGTAAGTGCCGGTAGTTTTTGCTGTATTTTTCGTGTCAACAAAAAGTT
GGTTTTCTAGATCTCAATGCCGGCTGCGTCTCGAAAGGGGAAGGCACTCT
TTGCTCCGGTCCGATGACAGATAACAAATTTCGTCACCGAACCCCCACGC
GCTTCTCGATAACGAGGCCCACCCTTTCTGTAACTGGTACCTATACGAAG
TAGTGCACTGAACTACTGCTGTTTTGCATGTACATCTGGGTTTGCTGCGG
CAGAACACGGAGCCTGATTCGACGGTATGCTACGACCTACGCAAGCAGTA
CTTCAACTGCCTGCACCTCCCGAGCGTGAACACGGTGAGAGGCAGCAAGT
TCCGCCTCCGCGTGTTTTATGTACCTTTTTCGCGGCGATGGCGGTATGTT
TGCTATTTGCCGGTGTGGTGCTGTCTGTTGCGTCCTTTTCGGCGGCGCTA
GATGCGCCATGCGCGTTGTCTTGGCGTCTTAGATTGCTTTTTAGCATGCG
TGGTGTATCGCTCTTGAAAATGCATGCCTTTTTTTTTGTCGGCTTGTCCG
ATGGATAAGCCAGCAGAAGAACACACCCGCGTTGCTCGACGCTCGGGACA
TTGGCTGAAAAAAAGCGAACGGGGCACACACACACACCTGCTGTAGTTTT
CTTTGGGTCGACCAATAGCTCTCCGTATGCGGGTCTCTTGACGATAATTT
GTGTGCTTTTTAAAGATGTAATGCACCTGCTGCCTCTCCGGAAGAGAATG
AAACAAACAACAGATTGTTTTTTTGTGTACAGAGAAAAGGCTGGGGTGTT
GGCGGCGCCTCTCTTTGTAGTTACGGGTAACGGTGCCGCTCTGCCTCGGA
AGGGGTGCGCGTGGACACTGATGCACGACATAGTCTCACACACACACACA
CACACACACACGTAAATACATGCTGCTCTCTTCTCCGTCGCCGCGTCTCA
AACGAACAGATGTCCGAGAAGCAGATGGACTTCATGGAGGAGCGCAAAGA
CGTCCTTGTGTTGGCCTCTAAGGCGCTCGAGTCCGCAGGCGGGGCAAGCG
GTAGCGCGCCAGCAAAACCACCGGGGGAAAGCTCCGCATAGCGCGCTACA
TACATGGCTACCACACCAATAAAATTAGTTTTCACGAGCACCCGGAAGGA
GGTTGCTCGGTTGCGTCGTTTTTGGCTTCTTTTTTTCGGCCGGCGGAGAG
AAGCGAGCAAAACCTTGGACCTATTGTTGCGGTTTTGACGTGCTTTGCAA
CCAACGTCTCGGGGGTTAGTTGCGGGGTTAGGTAGGAAGGAGAACACGTT
TCGCGGGTCCTGCGTCTGGGGCCACATAAAGGAAACCGAAACGCTTGCGT
GTGTGTATCCTTGTGTTCCGGTCCAAAGAAAGGAAAAGAAAATTGGAAGC
GCGATGCCACGCAGAGCAATCTATAAAGGAAACCGAAACGCTTGGGTCGA
AGGGCTGACGGGTCAGTGCGAGATTGGATTCCCAAATCGCTCATTTCGGA
GCCCAGTAATTGGGGCAGCTGCTATGTAGTTAAGTAGTCGTTAGTTAGGA
GGCATATCAAAGGTTGGCTTGTGCGGGGCGCACGCAAGCACGGCAGGCGA
AACGGTCCTAACTGTTCGTTATTTTGTGGTTTCTAGTAGTTGAATCGAGT
CGGGCTGCTGTCGTCGATGGTGCCGTCACAAAATAGCTCGTTGGGCCTGT
CTTTCCAACCACGCGTTTTGCAGAGCCGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1849:14132..16763+

>mRNA_L-elsbetiae_contig1849.5374.1 ID=mRNA_L-elsbetiae_contig1849.5374.1|Name=mRNA_L-elsbetiae_contig1849.5374.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig1849:14132..16763+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGAGCGGTTTCGGAAAGAACAAGGTTGGGAGGTGCTACTCGATATT
CTCTACATTCGAAACGTGCATGATGGCGAGCGGTTTCGGAAAGAACAAGG
TTGGGAGGTGCTACTCGATATTCTCTACATTCGAAACGTGCATGAACACG
GAGCCTGATTCGACGGTATGCTACGACCTACGCAAGCAGTACTTCAACTG
CCTGCACCTCCCGAGCGTGAACACGAACACGGAGCCTGATTCGACGGTAT
GCTACGACCTACGCAAGCAGTACTTCAACTGCCTGCACCTCCCGAGCGTG
AACACGATGTCCGAGAAGCAGATGGACTTCATGGAGGAGCGCAAAGACGT
CCTTGTGTTGGCCTCTAAGGCGCTCGAGTCCGCAGGCGGGGCAAGCGGTA
GCGCGCCAGCAAAACCACCGGGGGAAAGCTCCGCATAGATGTCCGAGAAG
CAGATGGACTTCATGGAGGAGCGCAAAGACGTCCTTGTGTTGGCCTCTAA
GGCGCTCGAGTCCGCAGGCGGGGCAAGCGGTAGCGCGCCAGCAAAACCAC
CGGGGGAAAGCTCCGCATAG
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