mRNA_L-elsbetiae_contig1848.5371.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1848.5371.1
Unique NamemRNA_L-elsbetiae_contig1848.5371.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1848.5371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1848contigL-elsbetiae_contig1848:1422..1817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size398
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815770.0766878-CDS-L-elsbetiae_contig1848:1421..18171622815770.0766878-CDS-L-elsbetiae_contig1848:1421..1817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1848 1422..1817 +
1691683090.8427308-CDS-L-elsbetiae_contig1848:1421..18171691683090.8427308-CDS-L-elsbetiae_contig1848:1421..1817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1848 1422..1817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1848.5371.1prot_L-elsbetiae_contig1848.5371.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1848 1422..1817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1848.5371.1

>prot_L-elsbetiae_contig1848.5371.1 ID=prot_L-elsbetiae_contig1848.5371.1|Name=mRNA_L-elsbetiae_contig1848.5371.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
VWFWQVRLVWQRATRAWSIHPVMGGAVAVFAALTSSHDHLAQEVAREDAV
VLFSPVWMEAGTSFWLLSPPSSVRVSRRIALPGLYMSSSLVWTRPGVVCR
TAIGNDDKIVQPSPTAVLLFLIRLGVHTAGQA
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mRNA from alignment at L-elsbetiae_contig1848:1422..1817+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1848.5371.1 ID=mRNA_L-elsbetiae_contig1848.5371.1|Name=mRNA_L-elsbetiae_contig1848.5371.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig1848:1422..1817+ (Laminarionema elsbetiae ELsaHSoW15)
GTTTGGTTCTGGCAGGTGAGACTGGTCTGGCAGCGGGCAACGCGTGCGTG
GTCCATCCATCCTGTGATGGGGGGGGCGGTTGCTGTTTTCGCTGCACTTA
CAAGTAGCCATGATCACCTCGCGCAGGAAGTTGCACGGGAAGATGCAGTT
GTGTTGTTCTCTCCTGTTTGGATGGAGGCTGGAACGAGTTTTTGGTTACT
TTCTCCGCCATCTTCCGTCCGTGTTTCTCGGCGAATCGCATTACCGGGCC
TCTACATGAGTTCATCTCTAGTATGGACACGTCCAGGGGTTGTGTGTCGC
ACTGCTATTGGAAACGACGACAAAATCGTCCAACCGAGCCCAACTGCTGT
ACTGCTGTTCTTGATTCGACTCGGTGTCCATACTGCAGGACAAGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1848:1422..1817+

>mRNA_L-elsbetiae_contig1848.5371.1 ID=mRNA_L-elsbetiae_contig1848.5371.1|Name=mRNA_L-elsbetiae_contig1848.5371.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig1848:1422..1817+ (Laminarionema elsbetiae ELsaHSoW15)
GTTTGGTTCTGGCAGGTGAGACTGGTCTGGCAGCGGGCAACGCGTGCGTG
GTCCATCCATCCTGTGATGGGGGGGGCGGTTGCTGTTTTCGCTGCACTTA
CAAGTAGCCATGATCACCTCGCGCAGGAAGTTGCACGGGAAGATGCAGTT
GTGTTGTTCTCTCCTGTTTGGATGGAGGCTGGAACGAGTTTTTGGTTACT
TTCTCCGCCATCTTCCGTCCGTGTTTCTCGGCGAATCGCATTACCGGGCC
TCTACATGAGTTCATCTCTAGTATGGACACGTCCAGGGGTTGTGTGTCGC
ACTGCTATTGGAAACGACGACAAAATCGTCCAACCGAGCCCAACTGCTGT
ACTGCTGTTCTTGATTCGACTCGGTGTCCATACTGCAGGACAAGCTGTTT
GGTTCTGGCAGGTGAGACTGGTCTGGCAGCGGGCAACGCGTGCGTGGTCC
ATCCATCCTGTGATGGGGGGGGCGGTTGCTGTTTTCGCTGCACTTACAAG
TAGCCATGATCACCTCGCGCAGGAAGTTGCACGGGAAGATGCAGTTGTGT
TGTTCTCTCCTGTTTGGATGGAGGCTGGAACGAGTTTTTGGTTACTTTCT
CCGCCATCTTCCGTCCGTGTTTCTCGGCGAATCGCATTACCGGGCCTCTA
CATGAGTTCATCTCTAGTATGGACACGTCCAGGGGTTGTGTGTCGCACTG
CTATTGGAAACGACGACAAAATCGTCCAACCGAGCCCAACTGCTGTACTG
CTGTTCTTGATTCGACTCGGTGTCCATACTGCAGGACAAGCT
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