mRNA_L-elsbetiae_contig18453.5362.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18453.5362.1
Unique NamemRNA_L-elsbetiae_contig18453.5362.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18453.5362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18453contigL-elsbetiae_contig18453:37..401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size365
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815769.3749497-CDS-L-elsbetiae_contig18453:36..3961622815769.3749497-CDS-L-elsbetiae_contig18453:36..396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18453 37..396 +
1691683090.3720045-CDS-L-elsbetiae_contig18453:36..3961691683090.3720045-CDS-L-elsbetiae_contig18453:36..396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18453 37..396 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815769.3859084-UTR-L-elsbetiae_contig18453:396..4011622815769.3859084-UTR-L-elsbetiae_contig18453:396..401Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18453 397..401 +
1691683090.3822453-UTR-L-elsbetiae_contig18453:396..4011691683090.3822453-UTR-L-elsbetiae_contig18453:396..401Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18453 397..401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18453.5362.1prot_L-elsbetiae_contig18453.5362.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18453 37..396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18453.5362.1

>prot_L-elsbetiae_contig18453.5362.1 ID=prot_L-elsbetiae_contig18453.5362.1|Name=mRNA_L-elsbetiae_contig18453.5362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
KKTGILSIVRQASGPCRRHEAQAVRAAGLSATAVPARRTAAAGLRLLRLL
LPHRVAGATAAPSARTPSPLPQALLRLRRDDRLSSGGAAGLMPAHGGRWR
RRRRSEALIAQRITRAIRG*
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mRNA from alignment at L-elsbetiae_contig18453:37..401+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18453.5362.1 ID=mRNA_L-elsbetiae_contig18453.5362.1|Name=mRNA_L-elsbetiae_contig18453.5362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=365bp|location=Sequence derived from alignment at L-elsbetiae_contig18453:37..401+ (Laminarionema elsbetiae ELsaHSoW15)
AAAAAAACAGGAATTCTGTCAATCGTGCGTCAGGCGTCAGGGCCATGCCG
GCGGCACGAAGCACAAGCCGTGCGGGCGGCGGGACTGTCAGCAACCGCCG
TGCCAGCCCGGCGCACGGCTGCCGCAGGCCTTCGCCTCCTCCGGCTTCTC
CTCCCCCACAGGGTGGCGGGGGCAACAGCCGCACCATCGGCTAGAACACC
ATCACCGTTGCCGCAAGCGCTTTTACGCTTGCGGCGCGATGATCGCCTTT
CCTCGGGAGGAGCAGCAGGATTGATGCCTGCGCACGGCGGGCGTTGGCGT
CGTCGGCGACGGTCCGAGGCGCTGATAGCACAGCGGATAACACGGGCCAT
TCGGGGGTAGAGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18453:37..401+

>mRNA_L-elsbetiae_contig18453.5362.1 ID=mRNA_L-elsbetiae_contig18453.5362.1|Name=mRNA_L-elsbetiae_contig18453.5362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig18453:37..401+ (Laminarionema elsbetiae ELsaHSoW15)
AAAAAAACAGGAATTCTGTCAATCGTGCGTCAGGCGTCAGGGCCATGCCG
GCGGCACGAAGCACAAGCCGTGCGGGCGGCGGGACTGTCAGCAACCGCCG
TGCCAGCCCGGCGCACGGCTGCCGCAGGCCTTCGCCTCCTCCGGCTTCTC
CTCCCCCACAGGGTGGCGGGGGCAACAGCCGCACCATCGGCTAGAACACC
ATCACCGTTGCCGCAAGCGCTTTTACGCTTGCGGCGCGATGATCGCCTTT
CCTCGGGAGGAGCAGCAGGATTGATGCCTGCGCACGGCGGGCGTTGGCGT
CGTCGGCGACGGTCCGAGGCGCTGATAGCACAGCGGATAACACGGGCCAT
TCGGGGGTAGAAAAAAACAGGAATTCTGTCAATCGTGCGTCAGGCGTCAG
GGCCATGCCGGCGGCACGAAGCACAAGCCGTGCGGGCGGCGGGACTGTCA
GCAACCGCCGTGCCAGCCCGGCGCACGGCTGCCGCAGGCCTTCGCCTCCT
CCGGCTTCTCCTCCCCCACAGGGTGGCGGGGGCAACAGCCGCACCATCGG
CTAGAACACCATCACCGTTGCCGCAAGCGCTTTTACGCTTGCGGCGCGAT
GATCGCCTTTCCTCGGGAGGAGCAGCAGGATTGATGCCTGCGCACGGCGG
GCGTTGGCGTCGTCGGCGACGGTCCGAGGCGCTGATAGCACAGCGGATAA
CACGGGCCATTCGGGGGTAG
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