mRNA_L-elsbetiae_contig18452.5361.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig18452.5361.1 vs. uniprot
Match: A0A6H5KHF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHF4_9PHAE) HSP 1 Score: 150 bits (380), Expect = 1.150e-40 Identity = 87/225 (38.67%), Postives = 122/225 (54.22%), Query Frame = -1 Query: 1 NHKGIEDRGGARTFGD-----MEVTEQWQEYSLKKLRDEGIMEQRLAAFLWP-GYTEHVLAALERIGLTFPCPEDDDGGLVVPLRLPETRPLYVGQHLSNFRDGHGQKSLTMHWKMPYGVPPGGIERIVSRCSSLGEASLFWRFGVLVRVEAAQDGGEEGDNGAERAWFMLEYDRYGQELVIESWGDLGKATAWATLSYITAVIREVTLQYPGLLWEAFVGCPDH 657 NHK E G GD + + +Q S ++L+ EGI+E RLA +WP G +E+VL L +GLTFP DD GGLVV LRL RP VG+ + F + WK+ GVP G +E++++RC S+G+ FWRFGVLV G+ D + A +LEY EL + +G+ + WA LSY+ + +R V L++PGL W + CP H Sbjct: 103 NHKDTETYEGFVNLGDNGDSCITLHDQVDIASWRRLKSEGILEPRLAHVIWPAGLSEYVLPTLVSLGLTFPLENDDAGGLVVLLRLKPGRPARVGKVIDTFCS-QNIPVFSASWKIFLGVPAGAMEKVLTRCCSIGDVQTFWRFGVLVHGSF----GDARDGSGDFA-VVLEYSSTNNELTAQIYGNKSQPAPWAALSYVISSVRFVLLEFPGLRWRGLLKCPQH 321
BLAST of mRNA_L-elsbetiae_contig18452.5361.1 vs. uniprot
Match: A0A6H5JYD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD1_9PHAE) HSP 1 Score: 150 bits (378), Expect = 3.280e-38 Identity = 88/225 (39.11%), Postives = 121/225 (53.78%), Query Frame = -1 Query: 1 NHKGIEDRGGARTFGD-----MEVTEQWQEYSLKKLRDEGIMEQRLAAFLWP-GYTEHVLAALERIGLTFPCPEDDDGGLVVPLRLPETRPLYVGQHLSNFRDGHGQKSLTMHWKMPYGVPPGGIERIVSRCSSLGEASLFWRFGVLVRVEAAQDGGEEGDNGAERAWFMLEYDRYGQELVIESWGDLGKATAWATLSYITAVIREVTLQYPGLLWEAFVGCPDH 657 NHK E G GD + + +Q S ++L+ EGI+E RLA +WP G +E+VL L +GLTFP DD GGLVV LRL RP VG+ + F + WK+ GVP G +E++++RC S+G FWRFGVLV G+ D + A +LEY EL + +GD + WA LSY+ + +R V L++PGL W + CP H Sbjct: 117 NHKDQETFEGFVKLGDNGDSCITLHDQVDIASWRRLKSEGILEPRLAHVIWPAGLSEYVLPTLVSLGLTFPLENDDAGGLVVLLRLKPGRPARVGKVIDTFCS-QNIPVFSASWKIFLGVPAGAMEKVLTRCCSIGGVQTFWRFGVLVHGSF----GDARDGSGDFA-VVLEYSSINNELTAQIYGDKSQPAPWAALSYVISSVRFVLLEFPGLRWRGLLKCPQH 335
BLAST of mRNA_L-elsbetiae_contig18452.5361.1 vs. uniprot
Match: A0A6H5L0H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H4_9PHAE) HSP 1 Score: 148 bits (374), Expect = 1.110e-37 Identity = 85/225 (37.78%), Postives = 120/225 (53.33%), Query Frame = -1 Query: 1 NHKGIEDRGGARTFGD-----MEVTEQWQEYSLKKLRDEGIMEQRLAAFLWP-GYTEHVLAALERIGLTFPCPEDDDGGLVVPLRLPETRPLYVGQHLSNFRDGHGQKSLTMHWKMPYGVPPGGIERIVSRCSSLGEASLFWRFGVLVRVEAAQDGGEEGDNGAERAWFMLEYDRYGQELVIESWGDLGKATAWATLSYITAVIREVTLQYPGLLWEAFVGCPDH 657 NHK E+ G GD + + + S +L+ EG++E RLA +WP G +E+VL L +GLTFP D GLVV LRL TRP VG+ + F G + + WK+ GVPPG IE++++RC LG FWR+GVLV GG +G +LEY G EL + +G + AW LSY+ + +R + + +PGL W+ + CP H Sbjct: 205 NHKDQENFDGCVNLGDTGDARITLDDPLDIASWDRLKREGVLEPRLAYAMWPDGLSEYVLPTLASLGLTFPLENDPAEGLVVLLRLKPTRPGSVGKVIETFCSGL-TPAFSASWKIFLGVPPGAIEKVLTRCCGLGRVRTFWRYGVLVH------GGLGVQDGRSTFAVVLEYSSAGNELTAQIFGGISTPAAWVALSYVMSAVRLMLVDFPGLRWKGSLKCPQH 422
BLAST of mRNA_L-elsbetiae_contig18452.5361.1 vs. uniprot
Match: D7FL89_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL89_ECTSI) HSP 1 Score: 148 bits (373), Expect = 2.320e-37 Identity = 88/224 (39.29%), Postives = 127/224 (56.70%), Query Frame = -1 Query: 1 NHKGIED--RGGARTFGDMEVTEQWQEY--SLKKLRDEGIMEQRLAAFLWP-GYTEHVLAALERIGLTFPCPEDDDGGLVVPLRLPETRPLYVGQHLSNFRDGHGQKSLTMHWKMPYGVPPGGIERIVSRCSSLGEASLFWRFGVLVRVEAAQDGGEEGDNGAERAWFMLEYDRYGQELVIESWGDLGKATAWATLSYITAVIREVTLQYPGLLWEAFVGCPDH 657 NH+ ED RG + GD +T + ++ S +L+ G++E LA LWP G + +VL L+ +GLT+P +D GLVV LRL E RP VG+ L +FR H L++ WK+ GVPPG IE++++RC LG FWRFGVLV+ G G A+ ++EY E+ +E +G + A WA LSY +V + + ++PGL W A + CP H Sbjct: 604 NHRDDEDPLRGDV-SLGDTGITLKEDKHIASWNRLKGHGVLEPELAGVLWPDGLSNYVLPTLDSLGLTYPLDDDPAEGLVVLLRLDEKRPEDVGKELDDFRRDH-TAVLSVKWKIFLGVPPGAIEKMLTRCCRLGTLRTFWRFGVLVQ------GSLGGGMAAKTFALLIEYSHDTCEVDMEVYGSIRTAAPWAALSYGISVFQAMCSEFPGLRWRASLKCPQH 819
BLAST of mRNA_L-elsbetiae_contig18452.5361.1 vs. uniprot
Match: A0A6H5JME6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME6_9PHAE) HSP 1 Score: 145 bits (366), Expect = 2.040e-36 Identity = 83/223 (37.22%), Postives = 125/223 (56.05%), Query Frame = -1 Query: 1 NHKGIEDRGGARTFGDMEVTEQWQE--YSLKKLRDEGIMEQRLAAFLWPG-YTEHVLAALERIGLTFPCPEDDDGGLVVPLRLPETRPLYVGQHLSNFRDGHGQKSLTMHWKMPYGVPPGGIERIVSRCSSLGEASLFWRFGVLVRVEAAQDGGEEGDNGAERAWFML-EYDRYGQELVIESWGDLGKATAWATLSYITAVIREVTLQYPGLLWEAFVGCPDH 657 NH+ ED G+ + GD +T + S ++ + G+++ LA LWPG ++VL LE +GL + GGLVV LRL + RP VG+ L +FR H + ++ WK+ GVPPG +E++++RC S+GE FWRFGVLV+ G G A + + ML EY G E+ I+ +G++ WA LS + +R + +PGL W A + CP+H Sbjct: 743 NHREDEDFFGSLSLGDTGITLDGHKDKVSWQRFKQTGVLKPELAGLLWPGDLCDYVLRTLESLGLAHQLDDRFAGGLVVLLRLGKERPASVGKELDDFRRDH-EAIFSVTWKISMGVPPGAVEKVLTRCCSIGELRTFWRFGVLVQ-------GNMGGVTAGKTFAMLVEYSHKGSEIDIKVYGNIATTAPWAALSLGISAVRVMCSAFPGLRWCASLKCPEH 957
BLAST of mRNA_L-elsbetiae_contig18452.5361.1 vs. uniprot
Match: A0A6H5K516_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE) HSP 1 Score: 145 bits (365), Expect = 2.270e-36 Identity = 78/197 (39.59%), Postives = 111/197 (56.35%), Query Frame = -1 Query: 1 SLKKLRDEGIMEQRLAAFLWP-GYTEHVLAALERIGLTFPCPEDDDGGLVVPLRLPETRPLYVGQHLSNFRDGHGQKSLTMHWKMPYGVPPGGIERIVSRCSSLGEASLFWRFGVLVRVE-AAQDGGEEGDNGAERAWF--MLEYDRYGQELVIESWGDLGKATAWATLSYITAVIREVTLQYPGLLWEAFVGCPDH 579 S +L+ EG++E RLA +WP G +E+VL L +G TFP D D GLVV LRL RP VG+ + F G + + WK+ GVPPG +E++++RC LG FWR+GVLV AQDG R F +LEY EL + +GD+ AW LSY+ + ++ + + +PGL W+ + CP+H Sbjct: 270 SWDRLKKEGVLEPRLAYAMWPDGLSEYVLPTLASLGFTFPLENDPDEGLVVLLRLTPNRPESVGKVIDTFCSGL-TPAFSASWKIFLGVPPGAVEKVLTRCCGLGVVRTFWRYGVLVHGSFGAQDG---------RRTFAVVLEYSSTDNELTAKIFGDISTPAAWVALSYVMSAVKLMLMDFPGLRWKGSLKCPEH 456
BLAST of mRNA_L-elsbetiae_contig18452.5361.1 vs. uniprot
Match: A0A6H5KHN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN7_9PHAE) HSP 1 Score: 139 bits (349), Expect = 2.670e-36 Identity = 75/191 (39.27%), Postives = 107/191 (56.02%), Query Frame = -1 Query: 1 KLRDEGIMEQRLAAFLWP-GYTEHVLAALERIGLTFPCPEDDDGGLVVPLRLPETRPLYVGQHLSNFRDGHGQKSLTMHWKMPYGVPPGGIERIVSRCSSLGEASLFWRFGVLVRVEAAQDGGEEGDNGAERAWFMLEYDRYGQELVIESWGDLGKATAWATLSYITAVIREVTLQYPGLLWEAFVGCPDH 570 +L+ EG++E RLA +W G +E+VL L +GL FP D GGLVV LRL RP VG+ + F +L WKM GVPPG IE++++RC SLG ++FWR GVLV + G+E +G++ +LEY EL + +GD+ W LSY + +R + + +PGL + CP H Sbjct: 128 RLKREGVLEPRLARTMWSNGLSEYVLPTLTTLGLAFPLEADPAGGLVVLLRLTPGRPERVGKVMDTFYLDQ-TPALNASWKMFLGVPPGAIEKVLTRCCSLGGVTVFWRSGVLVHSALRDEDGDE--DGSDIFAVVLEYSSSDNELTAQVFGDISTQAPWTVLSYAASAVRLMLMDFPGLRSRGSLKCPQH 315
BLAST of mRNA_L-elsbetiae_contig18452.5361.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI) HSP 1 Score: 145 bits (365), Expect = 2.750e-36 Identity = 88/225 (39.11%), Postives = 129/225 (57.33%), Query Frame = -1 Query: 1 NHKGIED--RGGARTFGDMEVTEQWQEY--SLKKLRDEGIMEQRLAAFLWP-GYTEHVLAALERIGLTFPCPEDDDGGLVVPLRLPETRPLYVGQHLSNFRDGHGQKSLTMHWKMPYGVPPGGIERIVSRCSSLGEASLFWRFGVLVRVEAAQDGGEEGDNGAERAW-FMLEYDRYGQELVIESWGDLGKATAWATLSYITAVIREVTLQYPGLLWEAFVGCPDH 657 NH+ ED RG + GD +T + ++ S +L+ G++E LA LWP G + +VL AL+ +GLT+P +D GLVV LRL E RP VG+ L +FR H L++ WK+ GVPPG IE++++RC LG FWRFGVLV+ G G A R + ++EY E+ ++ +G + A WA LS+ +V + + ++PGL W A + CP H Sbjct: 640 NHRDDEDPLRGDV-SLGDTGITLKEDKHIASWNRLKGHGVLEPSLARVLWPDGLSNYVLPALDSLGLTYPLDDDPAEGLVVLLRLDEKRPEDVGKELDDFRRDH-TAVLSVKWKVFLGVPPGAIEKMLTRCCRLGTLRTFWRFGVLVQ-------GSLGGGIAARTFALVVEYSHDKCEVDMKVYGSISTAAPWAALSFGISVFQAMCSEFPGLRWRAALKCPQH 855
BLAST of mRNA_L-elsbetiae_contig18452.5361.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE) HSP 1 Score: 144 bits (363), Expect = 4.850e-36 Identity = 76/195 (38.97%), Postives = 109/195 (55.90%), Query Frame = -1 Query: 1 SLKKLRDEGIMEQRLAAFLWP-GYTEHVLAALERIGLTFPCPEDDDGGLVVPLRLPETRPLYVGQHLSNFRDGHGQKSLTMHWKMPYGVPPGGIERIVSRCSSLGEASLFWRFGVLVRVEAAQDGGEEGDNGAERAW-FMLEYDRYGQELVIESWGDLGKATAWATLSYITAVIREVTLQYPGLLWEAFVGCPDH 579 S +L+ EG++E +LA +WP G +E+VL L +GLTFP D D GLVV LRL RP VG+ + F G + + WK+ GVPPG +E++++RC LG FWR+GVLV G G R + +LEY EL + +GD+ AW LSY+ + +R + + +PGL W+ + CP H Sbjct: 409 SWDRLKKEGVLEPKLAYAMWPDGLSEYVLPTLASLGLTFPLENDPDEGLVVLLRLKPNRPESVGKVIDTFCSGL-TPAFSASWKIFLGVPPGAVEKVLTRCCGLGGVRTFWRYGVLVH-------GSLGVQDGRRTFAVVLEYSSTDNELTAKIFGDISTPAAWVALSYVMSAVRLMLVDFPGLRWKGSLKCPQH 595
BLAST of mRNA_L-elsbetiae_contig18452.5361.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI) HSP 1 Score: 144 bits (363), Expect = 4.930e-36 Identity = 73/191 (38.22%), Postives = 108/191 (56.54%), Query Frame = -1 Query: 1 KLRDEGIMEQRLAAFLWP-GYTEHVLAALERIGLTFPCPEDDDGGLVVPLRLPETRPLYVGQHLSNFRDGHGQKSLTMHWKMPYGVPPGGIERIVSRCSSLGEASLFWRFGVLVRVEAAQDGGEEGDNGAERAWFMLEYDRYGQELVIESWGDLGKATAWATLSYITAVIREVTLQYPGLLWEAFVGCPDH 570 +L++EG++E RLA +WP G +E+VL L +GLTFP D D GLVV LRL RP VG+ + F + + + W++ GVPPG IE++++RC LG+ FWR+GVLV GG +G + EY EL + +GD+ + W LSY+T+ + + + +PGL W + CP H Sbjct: 507 RLKNEGVLEPRLAYAMWPDGLSEYVLPTLASLGLTFPLEGDPDNGLVVLLRLEPNRPASVGEAIDTFCSKY-TPAFSASWEIFLGVPPGAIEKVLTRCCGLGDVQTFWRYGVLVH------GGLGDLDGRGIFAVVTEYSSTNNELTAQIFGDISTSAPWVALSYVTSAVSLMLMDFPGLRWNGSLKCPQH 690 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18452.5361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig18452.5361.1 >prot_L-elsbetiae_contig18452.5361.1 ID=prot_L-elsbetiae_contig18452.5361.1|Name=mRNA_L-elsbetiae_contig18452.5361.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp MIRAPHKGLPQQPRILQGHFSDDGGNVGQGGPGSGFSKISPRFDHQLLSVback to top mRNA from alignment at L-elsbetiae_contig18452:656..1312+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig18452.5361.1 ID=mRNA_L-elsbetiae_contig18452.5361.1|Name=mRNA_L-elsbetiae_contig18452.5361.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=657bp|location=Sequence derived from alignment at L-elsbetiae_contig18452:656..1312+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig18452:656..1312+ >mRNA_L-elsbetiae_contig18452.5361.1 ID=mRNA_L-elsbetiae_contig18452.5361.1|Name=mRNA_L-elsbetiae_contig18452.5361.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig18452:656..1312+ (Laminarionema elsbetiae ELsaHSoW15)back to top |