mRNA_L-elsbetiae_contig18448.5360.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18448.5360.1
Unique NamemRNA_L-elsbetiae_contig18448.5360.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Match: A0A6H5KG39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG39_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 9.160e-64
Identity = 122/261 (46.74%), Postives = 158/261 (60.54%), Query Frame = 1
Query:    4 SQWMIREGLVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPAFDKSSSAEIPAKQFQSCLRANRKEARNGIAGEVAIQSLGGEMWDGDNKPTATLAFY------GVEVP-----------ALGGGRASGDGVDIEVDGTPTAEGDLLLHFRSASGGGVQRQRGPNIGEAELSLVHFIIWAEKYWGKKFTRWLVTSVDTDEWIIILLAMSTGHIQAAGEGAVLVTVRKVVGSVPQYIFVNKVFAAIVGLED 735
            S+W +   L+LVCYDR+ LVP IK REQS RT  + G            C  +FD +S   IP  Q+QS LR N+K AR+G A  +A+  L  + W GD  P   +AFY      G++ P            + GG ++   V + VDG    E   +      +   VQR+RGP IGEAEL LVHFI+WA+KYWG  F  WLVTSVDTD W+I+LLAM+TG ++A+G+GAV VTV+KVVG  P+YI+VN+VFAAI GL D
Sbjct:  111 SRWRMEADLLLVCYDRAQLVPAIKGREQSGRTDKIGG------------CTLSFDPTSMDPIPQSQYQSWLRDNQKAARDGFAAHLAMDILDDKRWTGDCTPRGIVAFYSVGGEAGLKTPHAADPAVSSGGGVPGGPSTSPEVPVPVDGV---ESSTIHSGGDGTEXSVQRERGPKIGEAELPLVHFIVWAKKYWGLNFENWLVTSVDTDHWMIMLLAMNTGFLKASGKGAVEVTVQKVVGGAPKYIWVNRVFAAISGLRD 356          
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Match: A0A6H5JAK2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAK2_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 6.680e-63
Identity = 119/254 (46.85%), Postives = 165/254 (64.96%), Query Frame = 1
Query:    4 SQWMIREGLVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPAFDKSSSAEIPAKQFQSCLRANRKEARNGIAGEVAIQSLGGEMWDGDNKPTATLAFYGVE-VPALGGGRASG---DGVDIEVDGTPTAEG----DLLLHFRSASGG--GVQRQRGPNIGEAELSLVHFIIWAEKYWGKKFTRWLVTSVDTDEWIIILLAMSTGHIQAAGEGAVLVTVRKVVGSVPQYIFVNKVFAAIVGLED 735
            S W+    L+LVCYDR +LVPVIK +EQ  RT  +              C   FD  S+  +P+ Q+   LRA+ K AR+GIA  +A++ L  E+W GD KP   +AFYGV   P L     +G   +GV +E+ G    E     + LLHFR+ +    GV+RQRGP+IGEAELS++HFI+WA++YWGK F +W+V+SVDTD W+IILLAM+TG ++  GEGAV VTV+KVVG   +++++N+VFA+I  L+D
Sbjct:  311 STWLQSTELLLVCYDRQELVPVIKGQEQLGRTEKLGE------------CSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGGEPGLRADHPAGVDAEGVGLEMGGVGATEALSGTEPLLHFRNGNDPILGVERQRGPDIGEAELSVIHFIVWAKRYWGKNFHKWIVSSVDTDLWMIILLAMTTGWLRPRGEGAVDVTVQKVVGGETKFLWMNRVFASICELQD 552          
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Match: A0A6H5KTG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG2_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 6.730e-61
Identity = 118/254 (46.46%), Postives = 166/254 (65.35%), Query Frame = 1
Query:    4 SQWMIREGLVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPAFDKSSSAEIPAKQFQSCLRANRKEARNGIAGEVAIQSLGGEMWDGDNKPTATLAFYGVE-VPALGGGRASG---DGVDIEVDGTPTAEG----DLLLHFRSASGG--GVQRQRGPNIGEAELSLVHFIIWAEKYWGKKFTRWLVTSVDTDEWIIILLAMSTGHIQAAGEGAVLVTVRKVVGSVPQYIFVNKVFAAIVGLED 735
            S+W+    L++VCYDR +LVPVIK +EQ  RT  +              C   FD  S+  +P+ Q+   LRA+ K AR+GIA  +A++ L  E+W GD KP   +AFYGV   P L     +G   +GV +E+ G    E     + LLHFR+ +    GV+RQRGP+IGEAELS++HFI+WA++YWGK F +W+V+SVDTD W+IILLAM+TG ++  GEGAV VTV+KVVG   +++++N+VFA+I  L+D
Sbjct:  400 SKWLQSTELLMVCYDRQELVPVIKGQEQLGRTEKLGE------------CSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGGEPGLRADHPAGVDAEGVGLEMGGVGATEALSGTEPLLHFRNGNDPILGVERQRGPDIGEAELSVIHFIVWAKRYWGKNFHKWIVSSVDTDLWMIILLAMTTGWLRPRGEGAVDVTVQKVVGGETKFLWMNRVFASICELQD 641          
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 1.130e-60
Identity = 118/254 (46.46%), Postives = 166/254 (65.35%), Query Frame = 1
Query:    4 SQWMIREGLVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPAFDKSSSAEIPAKQFQSCLRANRKEARNGIAGEVAIQSLGGEMWDGDNKPTATLAFYGVE-VPALGGGRASG---DGVDIEVDGTPTAEG----DLLLHFRSASGG--GVQRQRGPNIGEAELSLVHFIIWAEKYWGKKFTRWLVTSVDTDEWIIILLAMSTGHIQAAGEGAVLVTVRKVVGSVPQYIFVNKVFAAIVGLED 735
            S+W+    L++VCYDR +LVPVIK +EQ  RT  +              C   FD  S+  +P+ Q+   LRA+ K AR+GIA  +A++ L  E+W GD KP   +AFYGV   P L     +G   +GV +E+ G    E     + LLHFR+ +    GV+RQRGP+IGEAELS++HFI+WA++YWGK F +W+V+SVDTD W+IILLAM+TG ++  GEGAV VTV+KVVG   +++++N+VFA+I  L+D
Sbjct: 1419 SKWLQSTELLMVCYDRQELVPVIKGQEQLGRTEKLGE------------CSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGGEPGLRADHPAGVDAEGVGLEMGGVGATEALSGTEPLLHFRNGNDPILGVERQRGPDIGEAELSVIHFIVWAKRYWGKNFHKWIVSSVDTDLWMIILLAMTTGWLRPRGEGAVDVTVQKVVGGETKFLWMNRVFASICELQD 1660          
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Match: A0A6H5L577_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L577_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 2.140e-58
Identity = 125/247 (50.61%), Postives = 155/247 (62.75%), Query Frame = 1
Query:   28 LVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPAFDKSSSAEIPAKQFQSCLRANRKEARNGIAGEVAIQSLGGEMWDGDNKPTATLAFYGV--EVPALGGGRASGD-----GVDIEVD--GTPTAEGDLLLHFR--SASGGGVQRQRGPNIGEAELSLVHFIIWAEKYWGKKFTRWLVTSVDTDEWIIILLAMSTGHIQAAGEGAVLVTVRKVVGSVPQYIFVNKVFAAIVGLED 735
            L++VCYDR +LVPVIK +EQ ART  V G            C   FD SS+  +P+ QFQ  LRAN  EAR+GIA  +A+  L  E WDGD KPT T AF GV  EV  L   R   +     G D E D  G   +  + LLHFR  S SG  VQR+RGP++GEAEL + HFI+WAE YWGKK  +WLVTSVDTD WIIILLAMSTG I   G   V +TV+++VG   ++++VN+V+  I  L+D
Sbjct:  691 LLVVCYDRGELVPVIKGQEQLARTEQVGG------------CTRDFDPSSTESVPSSQFQPWLRANSNEARDGIAANLAMNVLADEKWDGDQKPTGTAAFDGVGREV-GLRDVRQYNEMSEAFGADGEADEGGWYGSGPEHLLHFRNRSTSGTVVQRKRGPHVGEAELPVAHFIVWAETYWGKKLDKWLVTSVDTDLWIIILLAMSTGKIPPNGIDKVDITVQRIVGGAAKFLWVNRVYNKIADLKD 924          
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Match: D8LEN1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN1_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 1.200e-57
Identity = 116/254 (45.67%), Postives = 160/254 (62.99%), Query Frame = 1
Query:    4 SQWMIREGLVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPAFDKSSSAEIPAKQFQSCLRANRKEARNGIAGEVAIQSLGGEMWDGDNKPTATLAFYGVE-VPALG-----GGRASGDGVDIEVDGTPTA--EGDLLLHFRSASGG--GVQRQRGPNIGEAELSLVHFIIWAEKYWGKKFTRWLVTSVDTDEWIIILLAMSTGHIQAAGEGAVLVTVRKVVGSVPQYIFVNKVFAAIVGLED 735
            S+W+    L++VCYDR +LVPVIK  EQ  R+  +              C   FD  S+  +P+ Q+ S LRA+ K AR+GIA  +A + L  ++W GD KP   +AFYGV   P L      G  A G G+++  +G   A  E + LLHFR  +    GV+RQRGP+IGEAELS++HFI WA+KYWG+ F +W+V+SVDTD W+IILLAM+TG +   GE AV VTV +VVG   +++++N VFA+I  L+D
Sbjct:   55 SKWLQSTELLVVCYDRQELVPVIKGHEQLGRSEKIGE------------CSRTFDPKSTDPVPSLQYGSWLRADGKAARDGIAAHLATRVLADDVWTGDTKPNGIVAFYGVGGEPDLSADHPPGVDAEGIGLEMAREGAGEALPETEPLLHFRDRTDTIEGVERQRGPDIGEAELSVIHFIAWAKKYWGRSFDKWVVSSVDTDLWMIILLAMTTGWLTPRGERAVDVTVLRVVGGETKFLWMNGVFASICELQD 296          
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Match: A0A6H5JYE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE1_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 8.960e-57
Identity = 115/249 (46.18%), Postives = 153/249 (61.45%), Query Frame = 1
Query:    4 SQWMIREGLVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPAFDKSSSAEIPAKQFQSCLRANRKEARNGIAGEVAIQSLGGEMWDGDNKPTATLAFYGVE------------VPALGGGRASGDGVDIEVDGTPTAEGDLLLHFRSASGG--GVQRQRGPNIGEAELSLVHFIIWAEKYWGKKFTRWLVTSVDTDEWIIILLAMSTGHIQAAGEGAVLVTVRKVVGSVPQYIFVNKV 708
            S+W+    L+LVCYDR +LVPVIK +EQ  RT  +              C   FD  S+  + A Q+   LRA+RK ARNGIA  +A++ L  E+W GD KP   +AFYGV             V A GG    G G    + GT     + LLHFR+ +    GV+RQ GP+IGEAELS++HFI+WA+KYWGK F +W+V+SVDTD W+IILLAM+TG ++  GEGAV VTV+KV G   +++ +N+V
Sbjct:  530 SKWLQSTELLLVCYDRQELVPVIKGQEQLGRTEKLGE------------CSRTFDPKSTDPVTALQYGPWLRADRKAARNGIAAYLAMRVLADEVWTGDTKPNGIVAFYGVGGEPGLSADHPAGVDAEGGLEMGGVGATEALSGT-----EPLLHFRNGNDPTPGVERQLGPDIGEAELSVIHFIVWAKKYWGKNFDKWIVSSVDTDLWMIILLAMTTGWLRPRGEGAVDVTVQKVAGGETKFLCMNRV 761          
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Match: A0A6H5L0B5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B5_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 1.800e-56
Identity = 112/246 (45.53%), Postives = 155/246 (63.01%), Query Frame = 1
Query:   28 LVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPAFDKSSSAEIPAKQFQSCLRANRKEARNGIAGEVAIQSLGGEMWDGDNKPTATLAFYGV------EVPALGGGRASGDGVDIEVDGTPTA--EGDLLLHFRSASGG--GVQRQRGPNIGEAELSLVHFIIWAEKYWGKKFTRWLVTSVDTDEWIIILLAMSTGHIQAAGEGAVLVTVRKVVGSVPQYIFVNKVFAAIVGLED 735
            L++VCYDR +LVPVIK  EQ  RT  +              C   FD  S+  +P+ Q+   LRA+   AR+GIA  +A + L  ++W GD KP    AFYGV       V    G  A G G+++  +G   A  E + LLHFR  +    GV+RQRGP+IGEAELS++HFI+WA+KYWG+ F +W+V+SVDTD W+IILLAM+TG +   GE AV VTV++VVG   +++++N+VFA+I  L+D
Sbjct:  126 LLVVCYDRQELVPVIKGHEQLGRTEKLGE------------CSRTFDPKSTDPVPSLQYGPWLRADGMAARDGIATHLATRVLADDVWTGDTKPNGIAAFYGVGGEPDLSVDHPPGVHAEGIGLEVGREGAGKALSETEPLLHFRDGTNTIEGVERQRGPDIGEAELSVIHFIVWAKKYWGESFDKWIVSSVDTDLWMIILLAMTTGWLTPRGERAVDVTVQRVVGGETKFLWMNRVFASICELQD 359          
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Match: A0A6H5KTD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD3_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 1.280e-53
Identity = 119/320 (37.19%), Postives = 166/320 (51.88%), Query Frame = 1
Query:    4 SQWMIREGLVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPAFDKSSSAEIPAKQFQSCLRANRKEARNGIAGEVAIQSLGGEMWDGDNKPTATLAFYGVE-VPALGGGRASG---------------------------------------------------------------------DGVDIEVDGTPTAEG----DLLLHFRSASGG--GVQRQRGPNIGEAELSLVHFIIWAEKYWGKKFTRWLVTSVDTDEWIIILLAMSTGHIQAAGEGAVLVTVRKVVGSVPQYIFVNKVFAAIVGLED 735
            S+W+    L++VCYDR +LVPVIK +EQ  RT  +              C   FD  S+  +P+ Q+   LRA+ K AR+GIA  +A++ L  E+W GD KP   +AFYGV   P L     SG                                                                     +GV +E+ G    E     + LLHFR+ +    GV+RQRGP+IGEAELS++HFI+WA++YWGK F +W+V+SVDTD W+IILLAM+TG ++  GEGAV VTV+KVVG   +++++N+VFA+I  L+D
Sbjct:  257 SKWLQPTELLMVCYDRQELVPVIKGQEQLGRTEKLGE------------CSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGGEPGLRADHPSGVTRRRFPEPYHSFTFETEXARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGGEPGLRADHPAGVDAEGVGLEMGGVGATEALSGTEPLLHFRNGNDPVLGVERQRGPDIGEAELSVIHFIVWAKRYWGKNFHKWIVSSVDTDLWMIILLAMTTGWLRPRGEGAVDVTVQKVVGGETKFLWMNRVFASICELQD 564          
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Match: A0A6H5JUY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY2_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 1.020e-51
Identity = 110/252 (43.65%), Postives = 152/252 (60.32%), Query Frame = 1
Query:    4 SQWMIREGLVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPAFDKSSSAEIPAKQFQSCLRANRKEARNGIAGEVAIQSLGGEMWDGDNKPTATLAFYGVE-VPALGGGRASG-DGVDIEVDGTPT----AEGDLLLHFRSASGG--GVQRQRGPNIGEAELSLVHFIIWAEKYWGKKFTRWLVTSVDTDEWIIILLAMSTGHIQAAGEGAVLVTVRKVVGSVPQYIFVNKVFAAIVGLED 735
            S+W+    L++VCYDR +LVP IK  EQ  RT  +              C   FD  S+  +P+ Q+ S LRA+ K AR GIA  +A++ L  ++W GD KP   +AFYGV   P L G   +G +  D+ +DG  +    AE  LLLHFR+ +G    V+R RGP+I EAEL ++HFI  A+ YWGKKF +W+V+S DTD W IILLAM+TG +   GEG V +TV  VVG   +++++N+ F  I  L+D
Sbjct:   89 SKWLKSTKLLVVCYDRQELVPAIKGHEQLGRTEKLGE------------CSRTFDPKSTDPVPSLQYGSWLRADGKAARAGIAANLAMRVLADDVWTGDTKPNGIVAFYGVGGEPGLSGDNHAGVNAEDVGLDGVGSRMALAETVLLLHFRNGTGPIPDVERHRGPDIREAELCVIHFIARAKAYWGKKFDKWVVSSEDTDLWTIILLAMTTGWLTPRGEGTVDLTVHWVVGGETKFLWMNRKFVRICELQD 328          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KG39_9PHAE9.160e-6446.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAK2_9PHAE6.680e-6346.85Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KTG2_9PHAE6.730e-6146.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6D9_9PHAE1.130e-6046.46Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L577_9PHAE2.140e-5850.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEN1_ECTSI1.200e-5745.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYE1_9PHAE8.960e-5746.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0B5_9PHAE1.800e-5645.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTD3_9PHAE1.280e-5337.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUY2_9PHAE1.020e-5143.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18448contigL-elsbetiae_contig18448:2308..3042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size737
Cds size723
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815769.2784142-UTR-L-elsbetiae_contig18448:2307..23191622815769.2784142-UTR-L-elsbetiae_contig18448:2307..2319Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18448 2308..2319 +
1691683090.3311782-UTR-L-elsbetiae_contig18448:2307..23191691683090.3311782-UTR-L-elsbetiae_contig18448:2307..2319Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18448 2308..2319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815769.2895463-CDS-L-elsbetiae_contig18448:2319..30421622815769.2895463-CDS-L-elsbetiae_contig18448:2319..3042Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18448 2320..3042 +
1691683090.3429315-CDS-L-elsbetiae_contig18448:2319..30421691683090.3429315-CDS-L-elsbetiae_contig18448:2319..3042Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18448 2320..3042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18448.5360.1prot_L-elsbetiae_contig18448.5360.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18448 2320..3042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18448.5360.1

>prot_L-elsbetiae_contig18448.5360.1 ID=prot_L-elsbetiae_contig18448.5360.1|Name=mRNA_L-elsbetiae_contig18448.5360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=241bp
MIREGLVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPA
FDKSSSAEIPAKQFQSCLRANRKEARNGIAGEVAIQSLGGEMWDGDNKPT
ATLAFYGVEVPALGGGRASGDGVDIEVDGTPTAEGDLLLHFRSASGGGVQ
RQRGPNIGEAELSLVHFIIWAEKYWGKKFTRWLVTSVDTDEWIIILLAMS
TGHIQAAGEGAVLVTVRKVVGSVPQYIFVNKVFAAIVGLED
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mRNA from alignment at L-elsbetiae_contig18448:2308..3042+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18448.5360.1 ID=mRNA_L-elsbetiae_contig18448.5360.1|Name=mRNA_L-elsbetiae_contig18448.5360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=735bp|location=Sequence derived from alignment at L-elsbetiae_contig18448:2308..3042+ (Laminarionema elsbetiae ELsaHSoW15)
GCCTCGCAGTGGATGATACGAGAGGGGCTGGTGCTGGTGTGCTATGACCG CTCGGACCTTGTGCCGGTAATCAAAGCACGCGAGCAGTCGGCGAGGACTA CGGCTGTCAAAGGACGTGAGCACTCGGCGGCGAATCCTCAGAGCGAAGGA TGTCTCCCGGCGTTTGACAAATCGTCGAGCGCCGAAATCCCCGCCAAGCA GTTTCAGTCGTGTCTGCGGGCCAACAGGAAGGAAGCGCGAAACGGAATCG CCGGCGAGGTCGCCATACAGTCTTTGGGTGGCGAAATGTGGGACGGAGAC AACAAGCCGACGGCAACCTTGGCGTTCTACGGCGTTGAGGTTCCTGCTTT GGGAGGAGGCCGCGCGAGTGGTGATGGAGTGGACATAGAGGTGGATGGGA CACCAACAGCCGAGGGGGATCTGCTCCTACACTTCCGAAGTGCCTCCGGC GGTGGTGTTCAACGACAGCGTGGCCCGAACATCGGGGAAGCTGAGCTGTC TCTGGTTCACTTCATCATATGGGCGGAGAAGTACTGGGGGAAGAAATTCA CGCGGTGGCTCGTTACCTCCGTGGACACGGACGAATGGATTATCATTTTG CTGGCAATGAGCACGGGGCACATTCAGGCGGCCGGCGAGGGGGCGGTCCT GGTGACCGTGCGCAAGGTTGTGGGTAGTGTGCCGCAGTACATTTTCGTCA ACAAGGTGTTCGCAGCCATCGTGGGACTCGAGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18448:2308..3042+

>mRNA_L-elsbetiae_contig18448.5360.1 ID=mRNA_L-elsbetiae_contig18448.5360.1|Name=mRNA_L-elsbetiae_contig18448.5360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1446bp|location=Sequence derived from alignment at L-elsbetiae_contig18448:2308..3042+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATACGAGAGGGGCTGGTGCTGGTGTGCTATGACCGCTCGGACCTTGT
GCCGGTAATCAAAGCACGCGAGCAGTCGGCGAGGACTACGGCTGTCAAAG
GACGTGAGCACTCGGCGGCGAATCCTCAGAGCGAAGGATGTCTCCCGGCG
TTTGACAAATCGTCGAGCGCCGAAATCCCCGCCAAGCAGTTTCAGTCGTG
TCTGCGGGCCAACAGGAAGGAAGCGCGAAACGGAATCGCCGGCGAGGTCG
CCATACAGTCTTTGGGTGGCGAAATGTGGGACGGAGACAACAAGCCGACG
GCAACCTTGGCGTTCTACGGCGTTGAGGTTCCTGCTTTGGGAGGAGGCCG
CGCGAGTGGTGATGGAGTGGACATAGAGGTGGATGGGACACCAACAGCCG
AGGGGGATCTGCTCCTACACTTCCGAAGTGCCTCCGGCGGTGGTGTTCAA
CGACAGCGTGGCCCGAACATCGGGGAAGCTGAGCTGTCTCTGGTTCACTT
CATCATATGGGCGGAGAAGTACTGGGGGAAGAAATTCACGCGGTGGCTCG
TTACCTCCGTGGACACGGACGAATGGATTATCATTTTGCTGGCAATGAGC
ACGGGGCACATTCAGGCGGCCGGCGAGGGGGCGGTCCTGGTGACCGTGCG
CAAGGTTGTGGGTAGTGTGCCGCAGTACATTTTCGTCAACAAGGTGTTCG
CAGCCATCGTGGGACTCGAGGACATGATACGAGAGGGGCTGGTGCTGGTG
TGCTATGACCGCTCGGACCTTGTGCCGGTAATCAAAGCACGCGAGCAGTC
GGCGAGGACTACGGCTGTCAAAGGACGTGAGCACTCGGCGGCGAATCCTC
AGAGCGAAGGATGTCTCCCGGCGTTTGACAAATCGTCGAGCGCCGAAATC
CCCGCCAAGCAGTTTCAGTCGTGTCTGCGGGCCAACAGGAAGGAAGCGCG
AAACGGAATCGCCGGCGAGGTCGCCATACAGTCTTTGGGTGGCGAAATGT
GGGACGGAGACAACAAGCCGACGGCAACCTTGGCGTTCTACGGCGTTGAG
GTTCCTGCTTTGGGAGGAGGCCGCGCGAGTGGTGATGGAGTGGACATAGA
GGTGGATGGGACACCAACAGCCGAGGGGGATCTGCTCCTACACTTCCGAA
GTGCCTCCGGCGGTGGTGTTCAACGACAGCGTGGCCCGAACATCGGGGAA
GCTGAGCTGTCTCTGGTTCACTTCATCATATGGGCGGAGAAGTACTGGGG
GAAGAAATTCACGCGGTGGCTCGTTACCTCCGTGGACACGGACGAATGGA
TTATCATTTTGCTGGCAATGAGCACGGGGCACATTCAGGCGGCCGGCGAG
GGGGCGGTCCTGGTGACCGTGCGCAAGGTTGTGGGTAGTGTGCCGCAGTA
CATTTTCGTCAACAAGGTGTTCGCAGCCATCGTGGGACTCGAGGAC
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