mRNA_L-elsbetiae_contig18448.5360.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Match: A0A6H5KG39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG39_9PHAE) HSP 1 Score: 218 bits (556), Expect = 9.160e-64 Identity = 122/261 (46.74%), Postives = 158/261 (60.54%), Query Frame = 1 Query: 4 SQWMIREGLVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPAFDKSSSAEIPAKQFQSCLRANRKEARNGIAGEVAIQSLGGEMWDGDNKPTATLAFY------GVEVP-----------ALGGGRASGDGVDIEVDGTPTAEGDLLLHFRSASGGGVQRQRGPNIGEAELSLVHFIIWAEKYWGKKFTRWLVTSVDTDEWIIILLAMSTGHIQAAGEGAVLVTVRKVVGSVPQYIFVNKVFAAIVGLED 735 S+W + L+LVCYDR+ LVP IK REQS RT + G C +FD +S IP Q+QS LR N+K AR+G A +A+ L + W GD P +AFY G++ P + GG ++ V + VDG E + + VQR+RGP IGEAEL LVHFI+WA+KYWG F WLVTSVDTD W+I+LLAM+TG ++A+G+GAV VTV+KVVG P+YI+VN+VFAAI GL D Sbjct: 111 SRWRMEADLLLVCYDRAQLVPAIKGREQSGRTDKIGG------------CTLSFDPTSMDPIPQSQYQSWLRDNQKAARDGFAAHLAMDILDDKRWTGDCTPRGIVAFYSVGGEAGLKTPHAADPAVSSGGGVPGGPSTSPEVPVPVDGV---ESSTIHSGGDGTEXSVQRERGPKIGEAELPLVHFIVWAKKYWGLNFENWLVTSVDTDHWMIMLLAMNTGFLKASGKGAVEVTVQKVVGGAPKYIWVNRVFAAISGLRD 356
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Match: A0A6H5JAK2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAK2_9PHAE) HSP 1 Score: 216 bits (550), Expect = 6.680e-63 Identity = 119/254 (46.85%), Postives = 165/254 (64.96%), Query Frame = 1 Query: 4 SQWMIREGLVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPAFDKSSSAEIPAKQFQSCLRANRKEARNGIAGEVAIQSLGGEMWDGDNKPTATLAFYGVE-VPALGGGRASG---DGVDIEVDGTPTAEG----DLLLHFRSASGG--GVQRQRGPNIGEAELSLVHFIIWAEKYWGKKFTRWLVTSVDTDEWIIILLAMSTGHIQAAGEGAVLVTVRKVVGSVPQYIFVNKVFAAIVGLED 735 S W+ L+LVCYDR +LVPVIK +EQ RT + C FD S+ +P+ Q+ LRA+ K AR+GIA +A++ L E+W GD KP +AFYGV P L +G +GV +E+ G E + LLHFR+ + GV+RQRGP+IGEAELS++HFI+WA++YWGK F +W+V+SVDTD W+IILLAM+TG ++ GEGAV VTV+KVVG +++++N+VFA+I L+D Sbjct: 311 STWLQSTELLLVCYDRQELVPVIKGQEQLGRTEKLGE------------CSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGGEPGLRADHPAGVDAEGVGLEMGGVGATEALSGTEPLLHFRNGNDPILGVERQRGPDIGEAELSVIHFIVWAKRYWGKNFHKWIVSSVDTDLWMIILLAMTTGWLRPRGEGAVDVTVQKVVGGETKFLWMNRVFASICELQD 552
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Match: A0A6H5KTG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG2_9PHAE) HSP 1 Score: 216 bits (550), Expect = 6.730e-61 Identity = 118/254 (46.46%), Postives = 166/254 (65.35%), Query Frame = 1 Query: 4 SQWMIREGLVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPAFDKSSSAEIPAKQFQSCLRANRKEARNGIAGEVAIQSLGGEMWDGDNKPTATLAFYGVE-VPALGGGRASG---DGVDIEVDGTPTAEG----DLLLHFRSASGG--GVQRQRGPNIGEAELSLVHFIIWAEKYWGKKFTRWLVTSVDTDEWIIILLAMSTGHIQAAGEGAVLVTVRKVVGSVPQYIFVNKVFAAIVGLED 735 S+W+ L++VCYDR +LVPVIK +EQ RT + C FD S+ +P+ Q+ LRA+ K AR+GIA +A++ L E+W GD KP +AFYGV P L +G +GV +E+ G E + LLHFR+ + GV+RQRGP+IGEAELS++HFI+WA++YWGK F +W+V+SVDTD W+IILLAM+TG ++ GEGAV VTV+KVVG +++++N+VFA+I L+D Sbjct: 400 SKWLQSTELLMVCYDRQELVPVIKGQEQLGRTEKLGE------------CSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGGEPGLRADHPAGVDAEGVGLEMGGVGATEALSGTEPLLHFRNGNDPILGVERQRGPDIGEAELSVIHFIVWAKRYWGKNFHKWIVSSVDTDLWMIILLAMTTGWLRPRGEGAVDVTVQKVVGGETKFLWMNRVFASICELQD 641
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE) HSP 1 Score: 216 bits (550), Expect = 1.130e-60 Identity = 118/254 (46.46%), Postives = 166/254 (65.35%), Query Frame = 1 Query: 4 SQWMIREGLVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPAFDKSSSAEIPAKQFQSCLRANRKEARNGIAGEVAIQSLGGEMWDGDNKPTATLAFYGVE-VPALGGGRASG---DGVDIEVDGTPTAEG----DLLLHFRSASGG--GVQRQRGPNIGEAELSLVHFIIWAEKYWGKKFTRWLVTSVDTDEWIIILLAMSTGHIQAAGEGAVLVTVRKVVGSVPQYIFVNKVFAAIVGLED 735 S+W+ L++VCYDR +LVPVIK +EQ RT + C FD S+ +P+ Q+ LRA+ K AR+GIA +A++ L E+W GD KP +AFYGV P L +G +GV +E+ G E + LLHFR+ + GV+RQRGP+IGEAELS++HFI+WA++YWGK F +W+V+SVDTD W+IILLAM+TG ++ GEGAV VTV+KVVG +++++N+VFA+I L+D Sbjct: 1419 SKWLQSTELLMVCYDRQELVPVIKGQEQLGRTEKLGE------------CSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGGEPGLRADHPAGVDAEGVGLEMGGVGATEALSGTEPLLHFRNGNDPILGVERQRGPDIGEAELSVIHFIVWAKRYWGKNFHKWIVSSVDTDLWMIILLAMTTGWLRPRGEGAVDVTVQKVVGGETKFLWMNRVFASICELQD 1660
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Match: A0A6H5L577_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L577_9PHAE) HSP 1 Score: 209 bits (532), Expect = 2.140e-58 Identity = 125/247 (50.61%), Postives = 155/247 (62.75%), Query Frame = 1 Query: 28 LVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPAFDKSSSAEIPAKQFQSCLRANRKEARNGIAGEVAIQSLGGEMWDGDNKPTATLAFYGV--EVPALGGGRASGD-----GVDIEVD--GTPTAEGDLLLHFR--SASGGGVQRQRGPNIGEAELSLVHFIIWAEKYWGKKFTRWLVTSVDTDEWIIILLAMSTGHIQAAGEGAVLVTVRKVVGSVPQYIFVNKVFAAIVGLED 735 L++VCYDR +LVPVIK +EQ ART V G C FD SS+ +P+ QFQ LRAN EAR+GIA +A+ L E WDGD KPT T AF GV EV L R + G D E D G + + LLHFR S SG VQR+RGP++GEAEL + HFI+WAE YWGKK +WLVTSVDTD WIIILLAMSTG I G V +TV+++VG ++++VN+V+ I L+D Sbjct: 691 LLVVCYDRGELVPVIKGQEQLARTEQVGG------------CTRDFDPSSTESVPSSQFQPWLRANSNEARDGIAANLAMNVLADEKWDGDQKPTGTAAFDGVGREV-GLRDVRQYNEMSEAFGADGEADEGGWYGSGPEHLLHFRNRSTSGTVVQRKRGPHVGEAELPVAHFIVWAETYWGKKLDKWLVTSVDTDLWIIILLAMSTGKIPPNGIDKVDITVQRIVGGAAKFLWVNRVYNKIADLKD 924
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Match: D8LEN1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN1_ECTSI) HSP 1 Score: 202 bits (514), Expect = 1.200e-57 Identity = 116/254 (45.67%), Postives = 160/254 (62.99%), Query Frame = 1 Query: 4 SQWMIREGLVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPAFDKSSSAEIPAKQFQSCLRANRKEARNGIAGEVAIQSLGGEMWDGDNKPTATLAFYGVE-VPALG-----GGRASGDGVDIEVDGTPTA--EGDLLLHFRSASGG--GVQRQRGPNIGEAELSLVHFIIWAEKYWGKKFTRWLVTSVDTDEWIIILLAMSTGHIQAAGEGAVLVTVRKVVGSVPQYIFVNKVFAAIVGLED 735 S+W+ L++VCYDR +LVPVIK EQ R+ + C FD S+ +P+ Q+ S LRA+ K AR+GIA +A + L ++W GD KP +AFYGV P L G A G G+++ +G A E + LLHFR + GV+RQRGP+IGEAELS++HFI WA+KYWG+ F +W+V+SVDTD W+IILLAM+TG + GE AV VTV +VVG +++++N VFA+I L+D Sbjct: 55 SKWLQSTELLVVCYDRQELVPVIKGHEQLGRSEKIGE------------CSRTFDPKSTDPVPSLQYGSWLRADGKAARDGIAAHLATRVLADDVWTGDTKPNGIVAFYGVGGEPDLSADHPPGVDAEGIGLEMAREGAGEALPETEPLLHFRDRTDTIEGVERQRGPDIGEAELSVIHFIAWAKKYWGRSFDKWVVSSVDTDLWMIILLAMTTGWLTPRGERAVDVTVLRVVGGETKFLWMNGVFASICELQD 296
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Match: A0A6H5JYE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE1_9PHAE) HSP 1 Score: 202 bits (514), Expect = 8.960e-57 Identity = 115/249 (46.18%), Postives = 153/249 (61.45%), Query Frame = 1 Query: 4 SQWMIREGLVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPAFDKSSSAEIPAKQFQSCLRANRKEARNGIAGEVAIQSLGGEMWDGDNKPTATLAFYGVE------------VPALGGGRASGDGVDIEVDGTPTAEGDLLLHFRSASGG--GVQRQRGPNIGEAELSLVHFIIWAEKYWGKKFTRWLVTSVDTDEWIIILLAMSTGHIQAAGEGAVLVTVRKVVGSVPQYIFVNKV 708 S+W+ L+LVCYDR +LVPVIK +EQ RT + C FD S+ + A Q+ LRA+RK ARNGIA +A++ L E+W GD KP +AFYGV V A GG G G + GT + LLHFR+ + GV+RQ GP+IGEAELS++HFI+WA+KYWGK F +W+V+SVDTD W+IILLAM+TG ++ GEGAV VTV+KV G +++ +N+V Sbjct: 530 SKWLQSTELLLVCYDRQELVPVIKGQEQLGRTEKLGE------------CSRTFDPKSTDPVTALQYGPWLRADRKAARNGIAAYLAMRVLADEVWTGDTKPNGIVAFYGVGGEPGLSADHPAGVDAEGGLEMGGVGATEALSGT-----EPLLHFRNGNDPTPGVERQLGPDIGEAELSVIHFIVWAKKYWGKNFDKWIVSSVDTDLWMIILLAMTTGWLRPRGEGAVDVTVQKVAGGETKFLCMNRV 761
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Match: A0A6H5L0B5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B5_9PHAE) HSP 1 Score: 199 bits (507), Expect = 1.800e-56 Identity = 112/246 (45.53%), Postives = 155/246 (63.01%), Query Frame = 1 Query: 28 LVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPAFDKSSSAEIPAKQFQSCLRANRKEARNGIAGEVAIQSLGGEMWDGDNKPTATLAFYGV------EVPALGGGRASGDGVDIEVDGTPTA--EGDLLLHFRSASGG--GVQRQRGPNIGEAELSLVHFIIWAEKYWGKKFTRWLVTSVDTDEWIIILLAMSTGHIQAAGEGAVLVTVRKVVGSVPQYIFVNKVFAAIVGLED 735 L++VCYDR +LVPVIK EQ RT + C FD S+ +P+ Q+ LRA+ AR+GIA +A + L ++W GD KP AFYGV V G A G G+++ +G A E + LLHFR + GV+RQRGP+IGEAELS++HFI+WA+KYWG+ F +W+V+SVDTD W+IILLAM+TG + GE AV VTV++VVG +++++N+VFA+I L+D Sbjct: 126 LLVVCYDRQELVPVIKGHEQLGRTEKLGE------------CSRTFDPKSTDPVPSLQYGPWLRADGMAARDGIATHLATRVLADDVWTGDTKPNGIAAFYGVGGEPDLSVDHPPGVHAEGIGLEVGREGAGKALSETEPLLHFRDGTNTIEGVERQRGPDIGEAELSVIHFIVWAKKYWGESFDKWIVSSVDTDLWMIILLAMTTGWLTPRGERAVDVTVQRVVGGETKFLWMNRVFASICELQD 359
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Match: A0A6H5KTD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD3_9PHAE) HSP 1 Score: 191 bits (486), Expect = 1.280e-53 Identity = 119/320 (37.19%), Postives = 166/320 (51.88%), Query Frame = 1 Query: 4 SQWMIREGLVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPAFDKSSSAEIPAKQFQSCLRANRKEARNGIAGEVAIQSLGGEMWDGDNKPTATLAFYGVE-VPALGGGRASG---------------------------------------------------------------------DGVDIEVDGTPTAEG----DLLLHFRSASGG--GVQRQRGPNIGEAELSLVHFIIWAEKYWGKKFTRWLVTSVDTDEWIIILLAMSTGHIQAAGEGAVLVTVRKVVGSVPQYIFVNKVFAAIVGLED 735 S+W+ L++VCYDR +LVPVIK +EQ RT + C FD S+ +P+ Q+ LRA+ K AR+GIA +A++ L E+W GD KP +AFYGV P L SG +GV +E+ G E + LLHFR+ + GV+RQRGP+IGEAELS++HFI+WA++YWGK F +W+V+SVDTD W+IILLAM+TG ++ GEGAV VTV+KVVG +++++N+VFA+I L+D Sbjct: 257 SKWLQPTELLMVCYDRQELVPVIKGQEQLGRTEKLGE------------CSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGGEPGLRADHPSGVTRRRFPEPYHSFTFETEXARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGGEPGLRADHPAGVDAEGVGLEMGGVGATEALSGTEPLLHFRNGNDPVLGVERQRGPDIGEAELSVIHFIVWAKRYWGKNFHKWIVSSVDTDLWMIILLAMTTGWLRPRGEGAVDVTVQKVVGGETKFLWMNRVFASICELQD 564
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Match: A0A6H5JUY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY2_9PHAE) HSP 1 Score: 189 bits (480), Expect = 1.020e-51 Identity = 110/252 (43.65%), Postives = 152/252 (60.32%), Query Frame = 1 Query: 4 SQWMIREGLVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPAFDKSSSAEIPAKQFQSCLRANRKEARNGIAGEVAIQSLGGEMWDGDNKPTATLAFYGVE-VPALGGGRASG-DGVDIEVDGTPT----AEGDLLLHFRSASGG--GVQRQRGPNIGEAELSLVHFIIWAEKYWGKKFTRWLVTSVDTDEWIIILLAMSTGHIQAAGEGAVLVTVRKVVGSVPQYIFVNKVFAAIVGLED 735 S+W+ L++VCYDR +LVP IK EQ RT + C FD S+ +P+ Q+ S LRA+ K AR GIA +A++ L ++W GD KP +AFYGV P L G +G + D+ +DG + AE LLLHFR+ +G V+R RGP+I EAEL ++HFI A+ YWGKKF +W+V+S DTD W IILLAM+TG + GEG V +TV VVG +++++N+ F I L+D Sbjct: 89 SKWLKSTKLLVVCYDRQELVPAIKGHEQLGRTEKLGE------------CSRTFDPKSTDPVPSLQYGSWLRADGKAARAGIAANLAMRVLADDVWTGDTKPNGIVAFYGVGGEPGLSGDNHAGVNAEDVGLDGVGSRMALAETVLLLHFRNGTGPIPDVERHRGPDIREAELCVIHFIARAKAYWGKKFDKWVVSSEDTDLWTIILLAMTTGWLTPRGEGTVDLTVHWVVGGETKFLWMNRKFVRICELQD 328 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18448.5360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig18448.5360.1 >prot_L-elsbetiae_contig18448.5360.1 ID=prot_L-elsbetiae_contig18448.5360.1|Name=mRNA_L-elsbetiae_contig18448.5360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=241bp MIREGLVLVCYDRSDLVPVIKAREQSARTTAVKGREHSAANPQSEGCLPAback to top mRNA from alignment at L-elsbetiae_contig18448:2308..3042+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig18448.5360.1 ID=mRNA_L-elsbetiae_contig18448.5360.1|Name=mRNA_L-elsbetiae_contig18448.5360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=735bp|location=Sequence derived from alignment at L-elsbetiae_contig18448:2308..3042+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig18448:2308..3042+ >mRNA_L-elsbetiae_contig18448.5360.1 ID=mRNA_L-elsbetiae_contig18448.5360.1|Name=mRNA_L-elsbetiae_contig18448.5360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1446bp|location=Sequence derived from alignment at L-elsbetiae_contig18448:2308..3042+ (Laminarionema elsbetiae ELsaHSoW15)back to top |