mRNA_L-elsbetiae_contig18448.5359.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18448.5359.1
Unique NamemRNA_L-elsbetiae_contig18448.5359.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig18448.5359.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 317 bits (813), Expect = 1.430e-94
Identity = 154/289 (53.29%), Postives = 202/289 (69.90%), Query Frame = 2
Query:   92 DIRRNHRRVFMLCSSLVKPVLGDKHIASQDIKGTQWAKSRGTSREVIDFCAEMGLWATTSRLQHREDWYEKEVDDEDVIDENAECAAIPVDNCDKDISIPETQGEGPHFSCIAATITTRGPEVGRLEDPSKLRRRRDLTVNDVMKGREWEAEGGNRRYDTFEGVLYAAVLESVRSSSDRNNPLTCFEAVLRKNITPEKRAEAKGGYLFIQQGSTKKFSDSKAAVLRAVEAWRASRAG*AGWPCFIAGDEETYRFLHHLMTQEPGEWRDVRRYPGDWHILFHMAKALCIR 958
            D R  HRR+ ++C+ +VK +L  +H+ S DIKG QWAKS+GT R+VI+F AE GLWATTS++QHRED++ + V+D+D++  +AECAAIP+DNCD D  +   QGEGPH   IAAT  T GP+VGR++D   ++ R  LTV DV+ G E + E G RRY+ F   LY  V    R++SDR    TCFE+ LR  ITPE ++  +  Y FIQ+GSTK+FSD KAA+ R    W  S AG AG P  + GDEETY+ ++H+M QEP E+R VRRYPGDWH+L HMAKA+  R
Sbjct:  671 DRRSTHRRLLVMCTVVVKAILRGRHMGSHDIKGAQWAKSKGTCRDVINFVAEYGLWATTSQIQHREDFHARFVEDKDLLSRDAECAAIPLDNCDFDPRVGVGQGEGPHLPFIAATALTVGPDVGRMDDWWMVKSRGSLTVEDVLMGPERDREDGARRYNEFSSELYRGVFAEARNNSDRAAADTCFESELRTAITPEGKSPQQLRYAFIQKGSTKRFSDMKAAIQRIQGIWCGSPAGKAGAPFILGGDEETYKHMYHVMAQEPREYRQVRRYPGDWHLLLHMAKAMLRR 959          
BLAST of mRNA_L-elsbetiae_contig18448.5359.1 vs. uniprot
Match: A0A6H5JR31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR31_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 1.310e-84
Identity = 146/283 (51.59%), Postives = 185/283 (65.37%), Query Frame = 2
Query:  110 RRVFMLCSSLVKPVLGDKHIASQDIKGTQWAKSRGTSREVIDFCAEMGLWATTSRLQHREDWYEKEVDDEDVIDENAECAAIPVDNCDKDISIPETQGEGPHFSCIAATITTRGPEVGRLEDPSKLRRRRDLTVNDVMKGREWEAEGGNRRYDTFEGVLYAAVLESVRSSSDRNNPLTCFEAVLRKNITPEKRAEAKGGYLFIQQGSTKKFSDSKAAVLRAVEAWRASRAG*AGWPCFIAGDEETYRFLHHLMTQEPGEWRDVRRYPGDWHILFHMAKALCIR 958
            R++ M+C+ + K VLG ++ AS  IK  QWAKS+GT R V+DFCA  G+WAT S+++HRED+  K V+D  ++ ++A C A P DNCD    +  +Q E PH S IAA+  T G  VG LED SKL+R   LTV+DVMKG    A+GG RR+  F+  L  AV ES    S  + P  C EA LRK+ TPE+RA   G Y FIQ GSTK F+D+ AA+ R +  WR + AG  G PC IAGDEETYR L+H+  QE   +R  RRYPGDWH+L HMAKAL  R
Sbjct:  328 RQLVMMCTGVAKAVLGTRYRASHHIKAAQWAKSKGTPRVVVDFCAAHGMWATDSQVRHREDFNAKVVEDGHMLPKDATCGAFPFDNCDMKPVVGVSQRE-PHLSTIAASAVTVGGSVGELEDTSKLKRYSLLTVDDVMKGPN--AQGGERRFKAFQSRLRRAVYESASLGSTPDGPRWCVEAQLRKDWTPEERATLDGRYAFIQLGSTKTFTDNNAAIDRILRIWRGTDAGKDGTPCIIAGDEETYRVLYHIQKQERIAYRQFRRYPGDWHLLLHMAKALLKR 607          
BLAST of mRNA_L-elsbetiae_contig18448.5359.1 vs. uniprot
Match: A0A6H5JDT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDT2_9PHAE)

HSP 1 Score: 266 bits (680), Expect = 1.480e-80
Identity = 137/264 (51.89%), Postives = 177/264 (67.05%), Query Frame = 2
Query:  167 IASQDIKGTQWAKSRGTSREVIDFCAEMGLWATTSRLQHREDWYEKEVDDEDVIDENAECAAIPVDNCDKDISIPETQGEGPHFSCIAATITTRGPEVGRLEDPSKLRRRRDLTVNDVMKGREWEAEGGNRRYDTFEGVLYAAVLESVRSSSDRNNPLTCFEAVLRKNITPEKRAEAKGGYLFIQQGSTKKFSDSKAAVLRAVEAWRASRAG*AGWPCFIAGDEETYRFLHHLMTQEPGEWRDVRRYPGDWHILFHMAKALCIR 958
            +AS  IK  QWAKS+GT R V+DFCA  G+WAT  +++HRED+  K V+D D + ++A C A P DNCD    +  +QGE PH S IAA++ T G  VG+LED S+L+R   LT++DVMKG    A+GG RR++ F+  L  AV ES    S  + PL C EA LRK++TPE+RA   G Y+FIQ  STKKF+D+KAA+   +  WR + AG  G PC IAGDEETYR L+H+  QE   +R  RRYPGDWH+  H+AKAL  R
Sbjct:    1 MASHHIKAAQWAKSKGTPRVVVDFCAAHGMWATDRQVRHREDFNAKVVEDGDKLPKDATCGAFPFDNCDMKPVVGVSQGE-PHLSTIAASVVTVGGSVGKLEDASRLKRYSLLTLDDVMKGPN--AQGGERRFEAFQSQLRRAVYESASLGSTPDGPLWCVEAQLRKDLTPEERATLDGRYVFIQLESTKKFTDNKAAIDCILRIWRGTVAGKDGAPCIIAGDEETYRVLYHIQKQERVAYRQFRRYPGDWHLHLHVAKALLKR 261          
BLAST of mRNA_L-elsbetiae_contig18448.5359.1 vs. uniprot
Match: A0A6H5KFZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFZ4_9PHAE)

HSP 1 Score: 266 bits (679), Expect = 3.610e-79
Identity = 130/283 (45.94%), Postives = 185/283 (65.37%), Query Frame = 2
Query:  110 RRVFMLCSSLVKPVLGDKHIASQDIKGTQWAKSRGTSREVIDFCAEMGLWATTSRLQHREDWYEKEVDDEDVIDENAECAAIPVDNCDKDISIPETQGEGPHFSCIAATITTRGPEVGRLEDPSKLRRRRDLTVNDVMKGREWEAEGGNRRYDTFEGVLYAAVLESVRSSSDRNNPLTCFEAVLRKNITPEKRAEAKGGYLFIQQGSTKKFSDSKAAVLRAVEAWRASRAG*AGWPCFIAGDEETYRFLHHLMTQEPGEWRDVRRYPGDWHILFHMAKALCIR 958
            RR+ ++C+S+VK VLG +++ S  IK TQWAKS+ T R V++F AE    AT S++ HRE  + + V+D +++ + A+CAA   DN D +  +   QGEGP+  C+A      G EVG L D   L+R  +L+V+D++ G +  A  G RRY  F   L+ AV +S R  S    PL CFEA LR+++TP+ R+ + G Y F+Q+ STK ++D K  + R ++ WR ++AG  G PC IAGDEETYRF++HLM Q+P  +R +RRYPGDWH+L HMAKAL  R
Sbjct:  374 RRLTVMCTSVVKSVLGSRYMPSHAIKATQWAKSKNTPRPVLNFIAEHLGCATDSQVYHRESKFARVVEDSNLLAKCAKCAAFSQDNVDFEPRVGVRQGEGPYIPCVACVANWVGEEVGTLHDAGTLKRLSELSVDDILVGSD--AAEGERRYGAFLATLFGAVSKSERIRSAEGGPLWCFEAQLREDVTPDARSNSTGKYAFVQRASTKSYTDMKRIIDRILDIWRGTQAGNDGAPCIIAGDEETYRFIYHLMKQDPDNYRQIRRYPGDWHLLLHMAKALLRR 654          
BLAST of mRNA_L-elsbetiae_contig18448.5359.1 vs. uniprot
Match: A0A6H5KK93_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK93_9PHAE)

HSP 1 Score: 266 bits (679), Expect = 1.920e-77
Identity = 130/283 (45.94%), Postives = 185/283 (65.37%), Query Frame = 2
Query:  110 RRVFMLCSSLVKPVLGDKHIASQDIKGTQWAKSRGTSREVIDFCAEMGLWATTSRLQHREDWYEKEVDDEDVIDENAECAAIPVDNCDKDISIPETQGEGPHFSCIAATITTRGPEVGRLEDPSKLRRRRDLTVNDVMKGREWEAEGGNRRYDTFEGVLYAAVLESVRSSSDRNNPLTCFEAVLRKNITPEKRAEAKGGYLFIQQGSTKKFSDSKAAVLRAVEAWRASRAG*AGWPCFIAGDEETYRFLHHLMTQEPGEWRDVRRYPGDWHILFHMAKALCIR 958
            RR+ ++C+S+VK VLG +++ S  IK TQWAKS+ T R V++F AE    AT S++ HRE  + + V+D +++ + A+CAA   DN D +  +   QGEGP+  C+A      G EVG L D   L+R  +L+V+D++ G +  A  G RRY  F   L+ AV +S R  S    PL CFEA LR+++TP+ R+ + G Y F+Q+ STK ++D K  + R ++ WR ++AG  G PC IAGDEETYRF++HLM Q+P  +R +RRYPGDWH+L HMAKAL  R
Sbjct:  672 RRLTVMCTSVVKSVLGSRYMPSHAIKATQWAKSKNTPRPVLNFIAEHLGCATDSQVYHRESKFARVVEDSNLLAKCAKCAAFSQDNVDFEPRVGVRQGEGPYIPCVACVANWVGEEVGTLHDAGTLKRLSELSVDDILVGSD--AAEGERRYGAFLATLFGAVSKSERIRSAEGGPLWCFEAQLREDVTPDARSNSTGKYAFVQRASTKSYTDMKRIIDRILDIWRGTQAGNDGAPCIIAGDEETYRFIYHLMKQDPDNYRQIRRYPGDWHLLLHMAKALLRR 952          
BLAST of mRNA_L-elsbetiae_contig18448.5359.1 vs. uniprot
Match: A0A6H5JHN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHN2_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 1.580e-72
Identity = 131/264 (49.62%), Postives = 169/264 (64.02%), Query Frame = 2
Query:  167 IASQDIKGTQWAKSRGTSREVIDFCAEMGLWATTSRLQHREDWYEKEVDDEDVIDENAECAAIPVDNCDKDISIPETQGEGPHFSCIAATITTRGPEVGRLEDPSKLRRRRDLTVNDVMKGREWEAEGGNRRYDTFEGVLYAAVLESVRSSSDRNNPLTCFEAVLRKNITPEKRAEAKGGYLFIQQGSTKKFSDSKAAVLRAVEAWRASRAG*AGWPCFIAGDEETYRFLHHLMTQEPGEWRDVRRYPGDWHILFHMAKALCIR 958
            +AS DIKG Q AKS+GT REVI+F AE GLWATTS++QHRED++ + VDD+D+  ++AECAAIP+DNCD D  +   QGEGPH   IAAT  T GP+VG ++D S ++ R  +TV DVM G E + E G RRY+ F   LY +V+   R++S+R+ P TC E+ L K IT E ++  +  Y FIQ+GSTK FSD KAA+ R +  WR       G P                   E  E+R VRRYPGDWH+L HMAKA+  R
Sbjct:    1 MASHDIKGAQRAKSKGTCREVINFVAEHGLWATTSKIQHREDFHARFVDDKDLQSQDAECAAIPLDNCDFDPRVVVGQGEGPHLPFIAATALTVGPDVGGMDDCSLVKSRGSITVEDVMMGPEPDREDGARRYNGFLVKLYRSVVAEARNNSERSGPDTCMESELIKAITLEGKSPQQLRYAFIQKGSTKSFSDMKAAIQRILGIWR-------GEP-----------------QPESREYRQVRRYPGDWHLLLHMAKAMLRR 240          
BLAST of mRNA_L-elsbetiae_contig18448.5359.1 vs. uniprot
Match: A0A6H5L577_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L577_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 2.530e-65
Identity = 127/276 (46.01%), Postives = 168/276 (60.87%), Query Frame = 2
Query:   92 DIRRNHRRVFMLCSSLVKPVLGDKHIASQDIKGTQWAKSRGTSREVIDFCAEMGLWATTSRLQHREDWYEKEVDDEDVIDENAECAAIPVDNCDKDISIPETQGEGPHFSCIAATITTRGPEVGRLEDPSKLRRRRDLTVNDVMKGREWEAEGGNRRYDTFEGVLYAAVLESVRSSSDRNNPLTCFEAVLRKNITPEKRAEAKGGYLFIQQGSTKKFSDSKAAVLRAVEAWRASRAG*AGWPCFIAGDEETYRFLHHLMTQEPGEWRD--VRRYPG 913
            D R   RR++MLC   VK +   +H+ + DIKG QWAKS+GT R+VIDF A  GLWATTS++QHRED++ K V+D+D++ + A+CA I  DN D D  + E QGEGPH S IAAT  T G +VGR++D + LRRRR LTV+ + KG   + E G+RR                        P TC E+ LRK                  +GST++++D+KAA+ R +E WR + AG  G PC IAGDEETYRFL+H+M Q P E+R   +RRY G
Sbjct:   65 DRRGFARRLYMLCKCAVKAIFLGRHLTAADIKGAQWAKSKGTCRQVIDFVAGHGLWATTSQVQHREDYHAKVVEDKDILPKGAQCAEIASDNSDHDPRVGERQGEGPHISFIAATAVTVGDDVGRMQDAASLRRRRSLTVDQITKG--LDQEQGDRR------------------------PWTCVESELRK------------------RGSTRRYTDNKAAIDRILEMWRYTSAGEEGAPCIIAGDEETYRFLYHIMKQNPEEYRQALLRRYWG 296          
BLAST of mRNA_L-elsbetiae_contig18448.5359.1 vs. uniprot
Match: A0A6H5K3J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J0_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 9.590e-59
Identity = 121/264 (45.83%), Postives = 157/264 (59.47%), Query Frame = 2
Query:  167 IASQDIKGTQWAKSRGTSREVIDFCAEMGLWATTSRLQHREDWYEKEVDDEDVIDENAECAAIPVDNCDKDISIPETQGEGPHFSCIAATITTRGPEVGRLEDPSKLRRRRDLTVNDVMKGREWEAEGGNRRYDTFEGVLYAAVLESVRSSSDRNNPLTCFEAVLRKNITPEKRAEAKGGYLFIQQGSTKKFSDSKAAVLRAVEAWRASRAG*AGWPCFIAGDEETYRFLHHLMTQEPGEWRDVRRYPGDWHILFHMAKALCIR 958
            +AS  IK  QWAKS+GT R V+DFCA  G+WAT  +++HRED+  K V+D D + ++  C A P DNCD +  +   QGE PH S IAA+  T G  VG+LED S+L+R   LT++DVMKG    A+GG RR++ F+  L A     +R    R +  T   AV+    TP       GG         + +S   AAV R +  WR + AG  G PC IAGDEETYR L+H+  QE   +R +RRYPGDWH+L HMAKAL  R
Sbjct:    1 MASHHIKAVQWAKSKGTPRVVVDFCAAHGMWATDRQVRHREDFNAKVVEDGDKLPKDVTCGAFPYDNCDMEPVVGVCQGE-PHLSTIAASAVTVGGSVGKLEDASRLKRYSLLTLDDVMKGPN--AQGGERRFEAFQSQLTAPTCR-LRERVVRFD--TGRAAVVCGGSTPN--GSNAGG---------ESYSRRPAAVDRILRIWRGTVAGKNGAPCIIAGDEETYRVLYHIQKQERMAYRQLRRYPGDWHLLLHMAKALLKR 247          
BLAST of mRNA_L-elsbetiae_contig18448.5359.1 vs. uniprot
Match: A0A6H5KSG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG4_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 2.660e-55
Identity = 98/196 (50.00%), Postives = 133/196 (67.86%), Query Frame = 2
Query:   92 DIRRNHRRVFMLCSSLVKPVLGDKHIASQDIKGTQWAKSRGTSREVIDFCAEMGLWATTSRLQHREDWYEKEVDDEDVIDENAECAAIPVDNCDKDISIPETQGEGPHFSCIAATITTRGPEVGRLEDPSKLRRRRDLTVNDVMKGREWEAEGGNRRYDTFEGVLYAAVLESVRSSSDRNNPLTCFEAVLRKNITP 679
            D R  HRR+ ++C+ +V  +L  +++ S DIKG QWAKS+GT REV +F AE GLWATTS++QHRED++ + V+D+D++ ++AECAAIP+DNCD D  +   QGEGPH   IAAT  T GP+VGR++D   ++ R  LTV DV+ G E +   G RRY+ F   LY  V    R++SDR    TCFE  LRK+  P
Sbjct:  409 DRRSTHRRLLVMCTVVVTAILRGRYMGSHDIKGAQWAKSKGTCREVTNFVAEHGLWATTSQIQHREDYHARFVEDKDLLSQDAECAAIPLDNCDFDPRVGVGQGEGPHLPFIAATALTVGPDVGRMDDWWLVKGRGSLTVEDVLMGPERDRGDGARRYNEFSADLYRGVFAEARNNSDRAAADTCFECELRKSRPP 604          
BLAST of mRNA_L-elsbetiae_contig18448.5359.1 vs. uniprot
Match: A0A6H5L193_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L193_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 4.770e-55
Identity = 101/197 (51.27%), Postives = 137/197 (69.54%), Query Frame = 2
Query:   92 DIRRNHRRVFMLCSSLVKPVLGDKHIASQDIKGTQWAKSRGTSREVIDFCAEMGLWATTSRLQHREDWYEKEVDDEDVIDENAECAAIPVDNCDKDISIPETQGEGPHFSCIAATITTRGPEVGRLEDPSKLRRRRDLTVNDVMKGREWEAEGGNRRYDTFEGVLYAAVLESVRSSSDRNNPLTCFEAVLRK-NITP 679
            D R   RR++MLC   VK +   +H+ + DIKG QWAKS+GT R+VIDF A  GLWATTS++QHRED++ K V+D+D++ + A+CAAI  DNCD D  + E QG+GPH S IAAT  T G +V R++D + LRRRR LTV+ + KG   + E G+RR+  FE  L  A ++SV SSS  ++P TC E+ +RK NI+P
Sbjct:  520 DRRGFARRLYMLCKCTVKAIFPGRHLTAADIKGAQWAKSKGTCRQVIDFVAGHGLWATTSQVQHREDYHAKVVEDKDILPKGAQCAAIANDNCDNDPRVGERQGKGPHISFIAATAVTVGDDVVRMQDAASLRRRRSLTVDQITKG--LDQEEGDRRFKDFERTLRRAAVDSVLSSSSEDSPWTCVESEIRKHNISP 714          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18448.5359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6D9_9PHAE1.430e-9453.29Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR31_9PHAE1.310e-8451.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDT2_9PHAE1.480e-8051.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFZ4_9PHAE3.610e-7945.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK93_9PHAE1.920e-7745.94Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHN2_9PHAE1.580e-7249.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L577_9PHAE2.530e-6546.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3J0_9PHAE9.590e-5945.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG4_9PHAE2.660e-5550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L193_9PHAE4.770e-5551.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18448contigL-elsbetiae_contig18448:340..2155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue1.2e-06
Seed eggNOG ortholog2880.D7FIA9
Hectar predicted targeting categoryother localisation
EggNOG OGs2D5KK@1,2SYVY@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size999
Cds size684
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18448.5359.1prot_L-elsbetiae_contig18448.5359.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18448 461..1703 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815769.2011693-UTR-L-elsbetiae_contig18448:339..4601622815769.2011693-UTR-L-elsbetiae_contig18448:339..460Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18448 340..460 +
1691683090.28572-UTR-L-elsbetiae_contig18448:339..4601691683090.28572-UTR-L-elsbetiae_contig18448:339..460Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18448 340..460 +
1622815769.2372441-UTR-L-elsbetiae_contig18448:1703..18551622815769.2372441-UTR-L-elsbetiae_contig18448:1703..1855Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18448 1704..1855 +
1691683090.3147407-UTR-L-elsbetiae_contig18448:1703..18551691683090.3147407-UTR-L-elsbetiae_contig18448:1703..1855Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18448 1704..1855 +
1622815769.247795-UTR-L-elsbetiae_contig18448:2113..21551622815769.247795-UTR-L-elsbetiae_contig18448:2113..2155Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18448 2114..2155 +
1691683090.3230958-UTR-L-elsbetiae_contig18448:2113..21551691683090.3230958-UTR-L-elsbetiae_contig18448:2113..2155Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18448 2114..2155 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815769.2158978-CDS-L-elsbetiae_contig18448:460..10061622815769.2158978-CDS-L-elsbetiae_contig18448:460..1006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18448 461..1006 +
1691683090.2957973-CDS-L-elsbetiae_contig18448:460..10061691683090.2957973-CDS-L-elsbetiae_contig18448:460..1006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18448 461..1006 +
1622815769.2252133-CDS-L-elsbetiae_contig18448:1565..17031622815769.2252133-CDS-L-elsbetiae_contig18448:1565..1703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18448 1566..1703 +
1691683090.3060002-CDS-L-elsbetiae_contig18448:1565..17031691683090.3060002-CDS-L-elsbetiae_contig18448:1565..1703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18448 1566..1703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18448.5359.1

>prot_L-elsbetiae_contig18448.5359.1 ID=prot_L-elsbetiae_contig18448.5359.1|Name=mRNA_L-elsbetiae_contig18448.5359.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=228bp
MLCSSLVKPVLGDKHIASQDIKGTQWAKSRGTSREVIDFCAEMGLWATTS
RLQHREDWYEKEVDDEDVIDENAECAAIPVDNCDKDISIPETQGEGPHFS
CIAATITTRGPEVGRLEDPSKLRRRRDLTVNDVMKGREWEAEGGNRRYDT
FEGVLYAAVLESVRSSSDRNNPLTCFEAVLRKNITPEKRAEAKGGYLFIQ
QGSTKKFSDSKAAVLRAVEAWRASRAG*
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mRNA from alignment at L-elsbetiae_contig18448:340..2155+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18448.5359.1 ID=mRNA_L-elsbetiae_contig18448.5359.1|Name=mRNA_L-elsbetiae_contig18448.5359.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1816bp|location=Sequence derived from alignment at L-elsbetiae_contig18448:340..2155+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGGAGCACGGCGCAGACCTCCCCATCGTCGTCGCCGTCCCCAGATGCA ATATCGGAGACGGTGGCCGCCGACAACGAGAAGGGTAACCCGATATCAGA AGGAACCATCGTCGTGTTTTTATGCTGTGTTCTTCGTTGGTGAAGCCTGT TTTGGGCGACAAGCACATCGCCTCGCAAGACATCAAAGGCACTCAATGGG CGAAATCCAGGGGTACCTCGCGGGAGGTGATTGACTTCTGTGCGGAAATG GGATTGTGGGCTACGACTTCGCGATTGCAACACCGAGAAGATTGGTACGA GAAGGAAGTCGACGACGAGGACGTAATCGACGAAAACGCCGAATGCGCCG CGATTCCTGTCGACAACTGCGACAAAGACATCAGCATCCCCGAGACACAG GGGGAAGGACCTCATTTTTCTTGCATTGCGGCGACGATTACCACCAGGGG TCCGGAGGTGGGGAGGCTCGAGGACCCAAGCAAGCTGCGGAGACGGAGGG ACCTCACGGTGAACGATGTCATGAAGGGACGCGAGTGGGAGGCGGAGGGG GGAAACCGGCGGTACGACACGTTCGAGGGAGTCCTCTACGCTGCCGTTCT CGAGAGCGTGCGGAGCAGTTCGGACAGAAATAACCCGCTCACGTGCTTTG AAGCGGTCCTTCGAAAGGTGCGTGTATGTGTGTGTACGTGTGTGTGTGTG CGCGCGTTTTGTTTGTACTCTTTGCTTTGCCGTGCCAGGTGCACCTGTCA TTTTTTTTTTGTATGTTTCATCAAGTTTGAGGTCGTGTATAGCAAGCGCG AATTTGGCGGTATTTGTCATGACGTTATCGGCAAGTATCCCACAAAGGAC AGCATGTTGTGACGGTAGCACATGAGAAGAAGCTAGGGTAGGTGCGATTA CTAGGTGGATGTCCCTTGTAACCCCCTCCCCCGCCCCATCGACCATCCAC TTCGAAAGGGTCAACCATGAAACAATCGTCGAGGAGAGCAACGACCACAT AGATCTCCGCCTCAACCCCCCCCCGTCAAACTCCCCTTCCACACCTGCAG GAATACATACATGTACACCTGAGTATTGTTGTAGGTGGAAAATGCTAGAG CAAGACTAGGTATCTATGTTAGAGCGCATCGCGCTAGTGTACGTCGATGT CGTGGGGTCCATGCAATATGCACCAAGCACTAAGCTTAAGACACCGACCC CGTTCCTATCTCCGCGTTCGATGCAGAACATCACCCCCGAGAAAAGAGCC GAGGCCAAAGGAGGCTACCTCTTCATCCAGCAAGGGAGCACGAAAAAGTT TTCCGACTCGAAGGCGGCCGTTCTACGCGCCGTCGAGGCATGGCGGGCGT CTCGGGCTGGGTAGGCGGGGTGGCCGTGTTTCATCGCCGGGGACGAGGAG ACGTACCGCTTCCTCCATCACCTCATGACCCAGGAGCCTGGCGAGTGGCG CGACGTCCGTCGGTATCCAGGGGATTGGCATATCCTTTTTCACATGGCGA AGGCTCTCTGCATTCGGTACTTGTGGCACATGTATGTGTGTAGACTCTAG CTCGGAATTTAATTTTGTAGGTGTCGATCTTTTGCTGTGGAGTGTCTATT GTTGTAGAGTGTGTGTGTTTGGGCGATGGGCTTGTAATTCGCACATGCCA GATGGTAAGCCGACAGCGTATAGATACACCGATACATGCCGTGTTCCAAC CAGCCTGCGCAGCCGAACCGAAATTCTACTCGCCCCCCCTTTCGCACACA CATGCTGCTTTCTTGACGCCGCAGGAGCCAAGCATGCCAACAAAGCTGCC GGCCCGTCAAGGTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18448:340..2155+

>mRNA_L-elsbetiae_contig18448.5359.1 ID=mRNA_L-elsbetiae_contig18448.5359.1|Name=mRNA_L-elsbetiae_contig18448.5359.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1368bp|location=Sequence derived from alignment at L-elsbetiae_contig18448:340..2155+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGTGTTCTTCGTTGGTGAAGCCTGTTTTGGGCGACAAGCACATCGC
CTCGCAAGACATCAAAGGCACTCAATGGGCGAAATCCAGGGGTACCTCGC
GGGAGGTGATTGACTTCTGTGCGGAAATGGGATTGTGGGCTACGACTTCG
CGATTGCAACACCGAGAAGATTGGTACGAGAAGGAAGTCGACGACGAGGA
CGTAATCGACGAAAACGCCGAATGCGCCGCGATTCCTGTCGACAACTGCG
ACAAAGACATCAGCATCCCCGAGACACAGGGGGAAGGACCTCATTTTTCT
TGCATTGCGGCGACGATTACCACCAGGGGTCCGGAGGTGGGGAGGCTCGA
GGACCCAAGCAAGCTGCGGAGACGGAGGGACCTCACGGTGAACGATGTCA
TGAAGGGACGCGAGTGGGAGGCGGAGGGGGGAAACCGGCGGTACGACACG
TTCGAGGGAGTCCTCTACGCTGCCGTTCTCGAGAGCGTGCGGAGCAGTTC
GGACAGAAATAACCCGCTCACGTGCTTTGAAGCGGTCCTTCGAAAGATGC
TGTGTTCTTCGTTGGTGAAGCCTGTTTTGGGCGACAAGCACATCGCCTCG
CAAGACATCAAAGGCACTCAATGGGCGAAATCCAGGGGTACCTCGCGGGA
GGTGATTGACTTCTGTGCGGAAATGGGATTGTGGGCTACGACTTCGCGAT
TGCAACACCGAGAAGATTGGTACGAGAAGGAAGTCGACGACGAGGACGTA
ATCGACGAAAACGCCGAATGCGCCGCGATTCCTGTCGACAACTGCGACAA
AGACATCAGCATCCCCGAGACACAGGGGGAAGGACCTCATTTTTCTTGCA
TTGCGGCGACGATTACCACCAGGGGTCCGGAGGTGGGGAGGCTCGAGGAC
CCAAGCAAGCTGCGGAGACGGAGGGACCTCACGGTGAACGATGTCATGAA
GGGACGCGAGTGGGAGGCGGAGGGGGGAAACCGGCGGTACGACACGTTCG
AGGGAGTCCTCTACGCTGCCGTTCTCGAGAGCGTGCGGAGCAGTTCGGAC
AGAAATAACCCGCTCACGTGCTTTGAAGCGGTCCTTCGAAAGAACATCAC
CCCCGAGAAAAGAGCCGAGGCCAAAGGAGGCTACCTCTTCATCCAGCAAG
GGAGCACGAAAAAGTTTTCCGACTCGAAGGCGGCCGTTCTACGCGCCGTC
GAGGCATGGCGGGCGTCTCGGGCTGGGTAGAACATCACCCCCGAGAAAAG
AGCCGAGGCCAAAGGAGGCTACCTCTTCATCCAGCAAGGGAGCACGAAAA
AGTTTTCCGACTCGAAGGCGGCCGTTCTACGCGCCGTCGAGGCATGGCGG
GCGTCTCGGGCTGGGTAG
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