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Homology
BLAST of mRNA_L-elsbetiae_contig1844.5357.1 vs. uniprot
Match: A0A6H5KZA9_9PHAE (TGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZA9_9PHAE) HSP 1 Score: 355 bits (910), Expect = 2.110e-110 Identity = 199/254 (78.35%), Postives = 215/254 (84.65%), Query Frame = 3
Query: 3 LVPLNRPLKNGDVVAILTAPFLPAKRPMAAAEAXXXXXXXX-----VDAAKPVDDVPLHVHTGVWPLNMGVMPMAQRGGDDGGEPDTLIEIDEIPFMTRGEKRLAREVELQHARLSMFAVLAWTAVEMERVSGLATLKPDALAAMHESPFVYLSSLSPQQALRVVMVMGVLEGGFLIFNSLQDRFEGKETEREATSSTETPLTAQEKAMEERRKFHARERELHNGRMAMIAITCLSVQSALAGEDSLARLLGLF 749
LVPLNRPL+NGDVVAILTAPFLPAK P AA XXXXXXX ++ +P DVPLHVHTGVWPLNMG MPM QR G+ EP+ L+EIDEIPFMT+GEKRLAREVELQHARLSMFAVLAW AVEMER+SGLA LKPDALAA+HESPF YLSSLSPQQALRVVMVMGVLEGGFL+ NSLQDRFE E R+ + LTAQEKAM++RRKFHARERELHNGR+AMIAI CLSVQSALAGEDSLARL GLF
Sbjct: 713 LVPLNRPLRNGDVVAILTAPFLPAKPPTAAXXXXXXXXXXVETTPTAESERPAVDVPLHVHTGVWPLNMGAMPMTQRSGE---EPELLMEIDEIPFMTKGEKRLAREVELQHARLSMFAVLAWMAVEMERISGLAMLKPDALAALHESPFAYLSSLSPQQALRVVMVMGVLEGGFLVCNSLQDRFERNEAIRQDKNDA---LTAQEKAMQDRRKFHARERELHNGRLAMIAIVCLSVQSALAGEDSLARLFGLF 960
BLAST of mRNA_L-elsbetiae_contig1844.5357.1 vs. uniprot
Match: W7TMT7_9STRA (Beta-ig-h3 fasciclin n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMT7_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 6.220e-5 Identity = 49/150 (32.67%), Postives = 79/150 (52.67%), Query Frame = 3
Query: 303 REVELQHARLSMFAVLAWTAVEMERVSGLATLKP--DALA-AMHESPFV-YLSSLSPQQALRVVMVMGVLEGGFLIFNSLQDRFEGKETEREATSST---ETPLTAQEKAMEERRKFHARERELHNGRMAMIAITCLSVQSALAGEDSLA 731
R+ E++HARL+M A + E+ + +P DAL + H +P V +L L P AL ++ GV + + + +D+ G+ ++ EA + E+P E+ EER K A REL+NGR+AMIA+ + VQ + G L+
Sbjct: 280 RDAEIKHARLAMLAAIGILTQELVVPTHPYAFQPVLDALRDSTHMAPDVSFLLPLPPIAALAAILAPGVAWEVWSLRRASKDKAPGRPSKEEALTQILKRESPDFEAERE-EEREKIDAGNRELNNGRLAMIAVVGMLVQEIVTGRSVLS 428
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 320.1 |
Seed ortholog evalue | 8.3e-85 |
Seed eggNOG ortholog | 2880.D8LCZ0 |
Preferred name | RSH1 |
KEGG rclass | RC00002,RC00078 |
KEGG ko | ko:K00951 |
KEGG Reaction | R00429 |
KEGG Pathway | ko00230,map00230 |
Hectar predicted targeting category | other localisation |
GOs | GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008893,GO:0009507,GO:0009536,GO:0009611,GO:0009987,GO:0010150,GO:0015979,GO:0016787,GO:0016788,GO:0016794,GO:0032501,GO:0032502,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050896,GO:0090693,GO:0099402 |
EggNOG free text desc. | HD domain containing 3 |
EggNOG OGs | COG0317@1,KOG1157@2759 |
Ec32 ortholog description | Guanosine polyphosphate pyrophosphohydrolases/synthetases |
Ec32 ortholog | Ec-01_001600.1 |
EC | 2.7.6.5 |
COG Functional cat. | KT |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko01000 |
Exons | 5 |
Model size | 1208 |
Cds size | 669 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815768.9342017-UTR-L-elsbetiae_contig1844:18402..18858 | 1622815768.9342017-UTR-L-elsbetiae_contig1844:18402..18858 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1844 18403..18858 - |
1691683090.1782575-UTR-L-elsbetiae_contig1844:18402..18858 | 1691683090.1782575-UTR-L-elsbetiae_contig1844:18402..18858 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1844 18403..18858 - |
1622815769.088793-UTR-L-elsbetiae_contig1844:21809..21863 | 1622815769.088793-UTR-L-elsbetiae_contig1844:21809..21863 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1844 21810..21863 - |
1691683090.2291796-UTR-L-elsbetiae_contig1844:21809..21863 | 1691683090.2291796-UTR-L-elsbetiae_contig1844:21809..21863 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1844 21810..21863 - |
1622815769.0999732-UTR-L-elsbetiae_contig1844:22636..22665 | 1622815769.0999732-UTR-L-elsbetiae_contig1844:22636..22665 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1844 22637..22665 - |
1691683090.2399-UTR-L-elsbetiae_contig1844:22636..22665 | 1691683090.2399-UTR-L-elsbetiae_contig1844:22636..22665 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1844 22637..22665 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815768.9438994-CDS-L-elsbetiae_contig1844:18858..19015 | 1622815768.9438994-CDS-L-elsbetiae_contig1844:18858..19015 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1844 18859..19015 - |
1691683090.1916678-CDS-L-elsbetiae_contig1844:18858..19015 | 1691683090.1916678-CDS-L-elsbetiae_contig1844:18858..19015 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1844 18859..19015 - |
1622815768.954916-CDS-L-elsbetiae_contig1844:20006..20134 | 1622815768.954916-CDS-L-elsbetiae_contig1844:20006..20134 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1844 20007..20134 - |
1691683090.2016058-CDS-L-elsbetiae_contig1844:20006..20134 | 1691683090.2016058-CDS-L-elsbetiae_contig1844:20006..20134 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1844 20007..20134 - |
1622815769.0600104-CDS-L-elsbetiae_contig1844:21245..21378 | 1622815769.0600104-CDS-L-elsbetiae_contig1844:21245..21378 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1844 21246..21378 - |
1691683090.2135434-CDS-L-elsbetiae_contig1844:21245..21378 | 1691683090.2135434-CDS-L-elsbetiae_contig1844:21245..21378 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1844 21246..21378 - |
1622815769.0746877-CDS-L-elsbetiae_contig1844:21558..21809 | 1622815769.0746877-CDS-L-elsbetiae_contig1844:21558..21809 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1844 21559..21809 - |
1691683090.221343-CDS-L-elsbetiae_contig1844:21558..21809 | 1691683090.221343-CDS-L-elsbetiae_contig1844:21558..21809 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1844 21559..21809 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1844.5357.1 >prot_L-elsbetiae_contig1844.5357.1 ID=prot_L-elsbetiae_contig1844.5357.1|Name=mRNA_L-elsbetiae_contig1844.5357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=223bp
MAAAEAAAEAAAAAVDAAKPVDDVPLHVHTGVWPLNMGVMPMAQRGGDDG GEPDTLIEIDEIPFMTRGEKRLAREVELQHARLSMFAVLAWTAVEMERVS GLATLKPDALAAMHESPFVYLSSLSPQQALRVVMVMGVLEGGFLIFNSLQ DRFEGKETEREATSSTETPLTAQEKAMEERRKFHARERELHNGRMAMIAI TCLSVQSALAGEDSLARLLGLF* back to topmRNA from alignment at L-elsbetiae_contig1844:18403..22665- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1844.5357.1 ID=mRNA_L-elsbetiae_contig1844.5357.1|Name=mRNA_L-elsbetiae_contig1844.5357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4263bp|location=Sequence derived from alignment at L-elsbetiae_contig1844:18403..22665- (Laminarionema elsbetiae ELsaHSoW15) GTCTTGTTCCGCTCAACCGGCCCCTGAAGGTGCGGACGGCGTGGGGGGTT
CGTCGTTGTGTGTGTGTGTTTTATTTTATTTTTTTCCATTGTTGGCTTAT
TCGTCGTCTGCCCCACTGGCCCCCTTCCTCCACTAAATACGACTGGCTAG
ACGACCCAACCGGGGTCACACAGGAGGGGGGGGGGGGGTGGAACCCCTCC
TGATGGATGCTGTATTTGCGGGGTGAACAGAAGAGGGGAGACTGCTGCTG
TAGGAATGATACATAAAAGGTAGAAGGATCATTGTCTACTTCAGCGCCGG
GAAACCCTCTCTTGTTCCTGTCCACCCCCAATCCCTTGAGCACGTGGCAA
GTAATTAGGTTTTTTCAGAGTTGCATCGGTTATAGGGTCAGCGTTGTTAG
GGTTGATTGACCACAGGAATCGACCGCTTCAGTATTGAATTAGTGCGGGG
CGCACATGGAGGTACTGCAGAGAGATATCGATCGGAAATGTTTTTAACGT
GAAGGCAACAGCAACAATAATCGGTTCCACTCGTGGGGTGTGGTCTTGTG
GTCTGTTGGCGGGGCACCCACATTCGCACGACAAGTGTCGCATCACGAAA
CGCCTCCGTATTTTTTTTTACTTGAAAGGGGAGGTCCTCTCACTTACATT
TTACCCCTTGCTTCCTGATCTTGACTGCACCGCCTCCAAGAGGCCAAGCA
GTCATTATCACCTGCATACATACGCACCCATGCACACGCTCAAGCTGCCT
GGCCCGCTTCCGTCGACGTTGCCTCCCGTCGCGAATGATCTCTTTTTACC
AGAACGGAGATGTAGTGGCGATTCTTACAGCCCCGTTCCTGCCCGCCAAA
CGCCCCATGGCGGCGGCCGAGGCGGCGGCGGAGGCGGCAGCGGCGGCAGT
GGATGCCGCCAAGCCCGTCGACGACGTCCCCCTCCACGTGCACACGGGAG
TGTGGCCGCTCAACATGGGGGTCATGCCGATGGCGCAGAGGGGCGGCGAT
GACGGCGGCGAGCCCGACACTCTGATCGAGATCGACGAGATCCCGTTCAT
GACCAGGGGGGAAAAGCGGCTCGCGAGGGAGGTGGAGCTACAGCATGCAA
GGCTGAGGTGAAGCTTGTTTTTTTATTCTTGATGGTGGGGGGAGGAGGAT
GGAGGATCGGTCGCCCGGGGGACAGTTCTGTCGCGCGTTGTGGCCTTTTG
TTGACAACAGCAATCAACCTCTGCTATTTCTTGGCTTGACGCACGGGTAC
GATGCTGCTCTCGCACCGCGCACGCATGCATTGGCAGCATGTTTGCGGTT
CTGGCTTGGACGGCGGTGGAGATGGAACGGGTCAGCGGGCTGGCGACGCT
TAAGCCCGACGCTCTGGCGGCCATGCACGAATCGCCCTTCGTGTACCTGT
CCAGCCTTTCTCCGCAGCAGGTGAGGGGGGTCGGTTGTTTGTTCGTCGGT
CAACCCTCTTCTGGGAAGTGCACACGCGTCGGGAGAGCGAACGTTCTGTG
TACAAATGGCGCATCCTGGTGTTGACGTAAACAGTGTTTACGATAGGGTT
AGGGTTTAGTGTGTGATCGGTGCTGGCTCTGTTTTTGCGTGTGTTCGAGG
TTCGGGTGGGGGAGGGGGGGGGGGCCGCGCGTTCGGCGTTGTCCCCCCAT
CCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTTTTTCGCGCCTCAT
GTTATTTCGTTGTTCCCCGGGAGTGTTTTTGTGTTTTTTATGTAAGTAGT
ATCTCGTAGAGCCTCAGGCGGGTATATATGTACCCTGCGCGCTGTGGTCC
TCCGACCCCCCTGCTTGGCCACGGGGTGTGTGTGTTGGTTGCCTTGTTCG
GCAGAGGCCAAGAAGTGAGATTTTGCCTGCCTGCCTGCCTGCCTGCCTGC
CTGCCGGCGAAGGGGCGCGGCCGTAGCTAGTACGATCGGGGGAAGTGGGG
AGGGATGAGCTGAGCGACGCCGTTGCTCTTGTCTGGTGTTGAGCCCGCGT
GGCAGAATTTCATTCAACGTTGATTGCGATAAGGGCACATTACCGTATCT
GACCGAGGTTTCCGGGCTGTTTGCTCTCCGAAAGAGTCTCCGGTGCTTGT
TCGCGTCCATCGCTGTCTCGTCTTCAGCATCAAAGTTCGAGATTTTCAGT
TTCCGTGCGGGACAGTGTAGGTTAAACGTTTTTTTTTTTTTAATCGCGCC
TCTGCCGATTGGTAACGAAAAATCACTTCAAGTTGGCGTCGTCGTGAGAC
TTGCTCGGGAAGGATCTAGAGGTAGATGGAAGAGGTGAAGAGGAGATTCA
TCAGGGGCTGCGTGGAGTGGAAGAAACATGGTAGGTTTTGTGTTGTTTTG
CCTCGCTGTGCAGAGGGGGCAACAACGAATGCCCGTTGTCATATGTATGT
ATCATACGAGGACCCCTCCAACCCTGTCTCGGAGGCGGTGCTCTCTCACT
TCATCAACTTAACTTTTTCTCTTTTTTTTTTTCCTTTTTTCAGCAACAAC
GTGTCGCCCTCTTCCCAATTCCCCCGAACAGGCTCTACGCGTGGTGATGG
TCATGGGCGTACTCGAGGGGGGTTTCCTAATTTTCAACAGCTTGCAGGAC
CGATTTGAGGGGAAAGAGACAGAGAGGGAGGCTACCTCAAGCACGGAGAC
ACCCCTCACGTGAGTCTAAATGATATTTAGTATCGATTACTCAACTCTCA
GATACACCGAAGCATCCTCGCTCTCTCTTTTTATCTATCTGCGTGTTTTT
AGCGCGACGCAGAAGGGTGTGGCTTGAGAGTGGCTTACCGTAATCATGCG
AGTCATCGCACCCCCCCCCCCGGATCGATTTTCAAAGATCGATCACCCCT
TCACGAAGAGGGTGCCAACACCAAACGGCACGGTTTTAAGACAGACCTCG
ACGTGATCGTGCCAATGCCACCCGTTTCGGTGCCGGCACTCCCCTTCGTC
AAGGCGCAATCGAGCCTTGAAAATCGGTGCGGGGGGGTGCGATGACTCGC
ATGATTACGGTATGTAGCTAAACAGCAGCGGCGGGGGTGGATTGAGCTCC
TACGGCTATTGTCGCGACCTCTTGGCATGTTTGGCCGGGACTGAAGAAAG
CACGGCGTGTGTTGCAGCGACAGACGTCGGCATGAAACGACACCGCGCCG
TTGTCCTGCTCCGCTTGTGCCATGATGTAACCGCTGGTTTCGTTTGTGCT
GTCCTGTCCTGTTCCAACCGCCGCGTTTGATAGCCCTCCCCCCCCTCCCC
CCTCCCCCCTCCCCCTTCGCCCCCCAGTTTCACACGCAATGTACACACGT
ACAAGTATATGTTGTTGTTTCTCGCGTTAGCTCTGTAGTCCAAAACATCC
TTGGAGGCCCGTGGTCACAAAACAAGGCACACTCGACGCCGCGGAAGAAC
TATAAAACAAACACAAGTTGGTACACACGCGCCCCGGCGGTACCAAACTG
AACCCCGAGGGATCTTGCGTCTCACCAACCGGTATAAAATCATATATACA
CACATGTGCCCGTACGACCCCCCGACCCACTCTCTCATCTCCGTCCATCA
TGCCGGCCGATGCCTGTGCCTCTATCTTCTACGCCTGCGACTTTGACTGC
TGCTGTGCCACCGCGAATGATCGTCCGTCCCCCCCAATCCCACATCTCAG
TGCGCAAGAGAAGGCCATGGAGGAGCGGAGGAAGTTCCACGCGCGTGAGC
GGGAGCTCCACAACGGGCGGATGGCAATGATCGCCATCACGTGCCTGTCT
GTCCAGAGCGCTCTCGCGGGGGAGGACAGCCTCGCGCGTCTTTTGGGGCT
TTTCTGAGAGGCAAAAGGGCAGGGGGTTGTGTCGTTTCGTTTTGGGCAAG
GCTCAGCGAGGCGAGACACAAATGGCAGCGGGGGGGGGGGGTAGGAGAGC
GCGCGAGAGGCCCAGGCCGCAACGTGGGGGCGCCGTGTCGAGAAGCGCTT
CGTTGGTGTCCGCTGCGACTGGCGCTCGAACCCCCCCCAACCCCCCGGGG
GGCGGTGTTTGTCTGGTGATGAGTGCTGACCGAGGCAGTCGTTGAGCTAT
TTAGCGTTGACAACAGAGAAGGGGGGGACGTGGGTTGTGGCGAGATGCCC
CCCCCTCTGCCCTCCGCAGGCGAGATACCCTCTTGCCCTGTGTGTAATCG
TGTGTCGTGTGTGTGCGTGTGTGTTGTTCGTGGTTTTGTGTATTCGCGTG
TGTGTACGTGGGGTCGGGTTTTTATGTCAATGTCGAATATATATATTTTT
CCAAAGAGGGGTA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1844:18403..22665- >mRNA_L-elsbetiae_contig1844.5357.1 ID=mRNA_L-elsbetiae_contig1844.5357.1|Name=mRNA_L-elsbetiae_contig1844.5357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1338bp|location=Sequence derived from alignment at L-elsbetiae_contig1844:18403..22665- (Laminarionema elsbetiae ELsaHSoW15) ATGGCGGCGGCCGAGGCGGCGGCGGAGGCGGCAGCGGCGGCAGTGGATGC CGCCAAGCCCGTCGACGACGTCCCCCTCCACGTGCACACGGGAGTGTGGC CGCTCAACATGGGGGTCATGCCGATGGCGCAGAGGGGCGGCGATGACGGC GGCGAGCCCGACACTCTGATCGAGATCGACGAGATCCCGTTCATGACCAG GGGGGAAAAGCGGCTCGCGAGGGAGGTGGAGCTACAGCATGCAAGGCTGA GATGGCGGCGGCCGAGGCGGCGGCGGAGGCGGCAGCGGCGGCAGTGGATG CCGCCAAGCCCGTCGACGACGTCCCCCTCCACGTGCACACGGGAGTGTGG CCGCTCAACATGGGGGTCATGCCGATGGCGCAGAGGGGCGGCGATGACGG CGGCGAGCCCGACACTCTGATCGAGATCGACGAGATCCCGTTCATGACCA GGGGGGAAAAGCGGCTCGCGAGGGAGGTGGAGCTACAGCATGCAAGGCTG AGCATGTTTGCGGTTCTGGCTTGGACGGCGGTGGAGATGGAACGGGTCAG CGGGCTGGCGACGCTTAAGCCCGACGCTCTGGCGGCCATGCACGAATCGC CCTTCGTGTACCTGTCCAGCCTTTCTCCGCAGCAGCATGTTTGCGGTTCT GGCTTGGACGGCGGTGGAGATGGAACGGGTCAGCGGGCTGGCGACGCTTA AGCCCGACGCTCTGGCGGCCATGCACGAATCGCCCTTCGTGTACCTGTCC AGCCTTTCTCCGCAGCAGGCTCTACGCGTGGTGATGGTCATGGGCGTACT CGAGGGGGGTTTCCTAATTTTCAACAGCTTGCAGGACCGATTTGAGGGGA AAGAGACAGAGAGGGAGGCTACCTCAAGCACGGAGACACCCCTCACGCTC TACGCGTGGTGATGGTCATGGGCGTACTCGAGGGGGGTTTCCTAATTTTC AACAGCTTGCAGGACCGATTTGAGGGGAAAGAGACAGAGAGGGAGGCTAC CTCAAGCACGGAGACACCCCTCACTGCGCAAGAGAAGGCCATGGAGGAGC GGAGGAAGTTCCACGCGCGTGAGCGGGAGCTCCACAACGGGCGGATGGCA ATGATCGCCATCACGTGCCTGTCTGTCCAGAGCGCTCTCGCGGGGGAGGA CAGCCTCGCGCGTCTTTTGGGGCTTTTCTGATGCGCAAGAGAAGGCCATG GAGGAGCGGAGGAAGTTCCACGCGCGTGAGCGGGAGCTCCACAACGGGCG GATGGCAATGATCGCCATCACGTGCCTGTCTGTCCAGAGCGCTCTCGCGG GGGAGGACAGCCTCGCGCGTCTTTTGGGGCTTTTCTGA back to top
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