Homology
BLAST of mRNA_L-elsbetiae_contig18438.5354.1 vs. uniprot
Match:
A0A6H5KCX2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX2_9PHAE)
HSP 1 Score: 137 bits (344), Expect = 4.250e-34
Identity = 83/133 (62.41%), Postives = 92/133 (69.17%), Query Frame = 2
Query: 152 VRWASVFLGVALVLRSSQVECSRARRRHHATPATHTNGDGNPSLVSPKDGMIREESSIPGVSIWTSKTAAFSKTPT-----PPSLHTNAAATTSYYRG--NDEVAVFSGDCQDGNGGIGDADVEPPSRGARED 529
VR AS+ LGV LVL S VECSRARRRHH TPA + N NPSLVSP+ GMIREESSIPGVSIW SK AA S + A++ S Y G N E A F+G+CQDG GGIGDADVEPPSRGARE+
Sbjct: 5 VRPASLLLGVGLVLLSP-VECSRARRRHHPTPAAYANSGENPSLVSPQQGMIREESSIPGVSIWFSKKAAASSASARRXXXXXXXXADPASSASSYCGDSNAEPAEFAGECQDGRGGIGDADVEPPSRGAREE 136
BLAST of mRNA_L-elsbetiae_contig18438.5354.1 vs. uniprot
Match:
D8LRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRV9_ECTSI)
HSP 1 Score: 130 bits (326), Expect = 1.070e-31
Identity = 77/131 (58.78%), Postives = 86/131 (65.65%), Query Frame = 2
Query: 152 VRWASVFLGVALVLRSSQVECSRARRRHHATPATHTNGDGNPSLVSPKDGMIREESSIPGVSIWTSKTAAFSKTPTPPSLHTNAAA-----TTSYYRGNDEVAVFSGDCQDGNGGIGDADVEPPSRGARED 529
VR AS+ LGV LVL S VECSRARRRHH TPA + N NPSLV+P+ G+IREESSIPGVSIWTS+ A +SY N E A F G+CQDG GGIGDADVEPPSRGARE+
Sbjct: 5 VRPASLLLGVGLVLLSP-VECSRARRRHHPTPAAYANSGDNPSLVTPQQGLIREESSIPGVSIWTSRRAXXXXXXXXXXXXXXXXXXXXXXASSYCYSNAEPAGFPGECQDGRGGIGDADVEPPSRGAREE 134
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18438.5354.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 4.25e-34 / Id = 62.41 Expect = 1.07e-31 / Id = 58.78 Sequence A0A6H5KCX2_9PHAE D8LRV9_ECTSI
Match Name E-value Identity Description
A0A6H5KCX2_9PHAE 4.250e-34 62.41 AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LRV9_ECTSI 1.070e-31 58.78 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category signal peptide
Exons 2
Model size 534
Cds size 399
Stop 0
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815768.6375444-CDS-L-elsbetiae_contig18438:556..622 1622815768.6375444-CDS-L-elsbetiae_contig18438:556..622 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18438 557..622 -
1691683089.9314919-CDS-L-elsbetiae_contig18438:556..622 1691683089.9314919-CDS-L-elsbetiae_contig18438:556..622 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18438 557..622 -
1622815768.6505816-CDS-L-elsbetiae_contig18438:1538..1871 1622815768.6505816-CDS-L-elsbetiae_contig18438:1538..1871 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18438 1539..1871 -
1691683089.9428322-CDS-L-elsbetiae_contig18438:1538..1871 1691683089.9428322-CDS-L-elsbetiae_contig18438:1538..1871 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18438 1539..1871 -
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815768.662667-UTR-L-elsbetiae_contig18438:1871..2004 1622815768.662667-UTR-L-elsbetiae_contig18438:1871..2004 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig18438 1872..2004 -
1691683089.9538007-UTR-L-elsbetiae_contig18438:1871..2004 1691683089.9538007-UTR-L-elsbetiae_contig18438:1871..2004 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig18438 1872..2004 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig18438.5354.1
>prot_L-elsbetiae_contig18438.5354.1 ID=prot_L-elsbetiae_contig18438.5354.1|Name=mRNA_L-elsbetiae_contig18438.5354.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
MGLLPHVRWASVFLGVALVLRSSQVECSRARRRHHATPATHTNGDGNPSL VSPKDGMIREESSIPGVSIWTSKTAAFSKTPTPPSLHTNAAATTSYYRGN DEVAVFSGDCQDGNGGIGDADVEPPSRGAREDQ back to top mRNA from alignment at L-elsbetiae_contig18438:557..2004-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18438.5354.1 ID=mRNA_L-elsbetiae_contig18438.5354.1|Name=mRNA_L-elsbetiae_contig18438.5354.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1448bp|location=Sequence derived from alignment at L-elsbetiae_contig18438:557..2004- (Laminarionema elsbetiae ELsaHSoW15)ACAGAACCGTGTTGTTGCTCGACCTCCGCGGAAAGCCTTGCGCGCCGCAT
TCTTCCATACTTACTCCAGGAGGCAAGAGTGGGTGGACGTTACAACCCGT
GCAGACTAGAGTAGAGGGAGAGGTGGAACGCAA ATGGGGCTGTTACCTCA
CGTGCGATGGGCGTCCGTCTTCCTCGGCGTAGCGCTCGTGCTCCGTTCGT
CTCAGGTGGAGTGCTCTCGCGCCAGGCGCCGCCATCATGCCACGCCCGCT
ACCCATACCAACGGTGATGGAAATCCCTCCCTGGTTTCACCCAAAGACGG
AATGATCCGCGAGGAGTCATCCATTCCTGGCGTGTCGATCTGGACGTCGA
AAACTGCGGCGTTTTCGAAAACACCAACACCACCATCTTTGCATACCAAC
GCTGCGGCCACCACCTCCTACTACCGCGGCAATGATGAGGTGGCGGTATT
TTCGGGCGATTGCCAG GTGGGTTTAATTGATAGTGAAAGGGTGCGCAATG
TTAATGTTTTTCTTGTTGGGTGCCGTTGAAATCTTGATTTGGATGCCTTC
GTTCGTTGCAGCACGAATGCTTGCTGCCTGTGGGACACGTGGGTGAGCGT
TGCAAGCAACACACGAAGCAGATGTGTGCGGGTGTAGAGGATTGGTTTGT
AGCTCTGCAGCGAAGCAGCTGCGCGCACTTGCAGGTATGAGACCTGCGAG
ACAGAGAGGTGTCAAGGGCGTTTTTTCCATTCCATACCCCTGTGGTGCGG
ACACGCGTCTGCGCGTGCCAGGCGAACCGCCGTTGTGTGCATCTACAACA
TGTGTATGTAGACATGCATATATCTATGTACGAGGTACATGTTCATATCT
ACTACAATACGCAGGATGCAGACCTGTAAGAATTACGCATGAACGAGCAA
TGTTCGTCTGGCACTACTCTGTGAGACCCTTTCAAAGCAAACTGATGCGC
AGGCCAGTACGTTCTGTACCGCAGCAGCAGCAGCGGTCGAGGTGCATTTT
TGCCGGCAAACACACACACATACACGTATCTATACATTCAGCCACCAACG
CCTCGCTTTTCGCTGCGATGATCGTGCAATGTGCGGCGTTGCACGTGGGT
TGTTTGCTGCTTCATCACCTCTCCTGAGATACTGCCACGGCTGTCCTGGT
TTGCTCCCCTCTGGCTGCCGTGCCATTCGACCACAGCCGTGACAGCAAGC
AGCACCCTCTCGAAGTTGAAGGTTTTCGCCGCAAAGCCTCGCTAACTTGC
CCTCGCGACGTTTGGCCGCACTAAACCACAACGAACGCTTTTGGTTTCGC
CTTGACGCTTCGCCGATCTTCGCCCCCGAACGGCGCCGCGCTTCGCCCGC
CCTGTGTCGGCCGTCGCGTTTCGTGAGAGCAGGACGGGAACGGGGGCATC
GGAGACGCGGACGTGGAGCCCCCCTCGAGAGGGGCCAGGGAAGACCAG back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig18438:557..2004-
>mRNA_L-elsbetiae_contig18438.5354.1 ID=mRNA_L-elsbetiae_contig18438.5354.1|Name=mRNA_L-elsbetiae_contig18438.5354.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig18438:557..2004- (Laminarionema elsbetiae ELsaHSoW15) ATGGGGCTGTTACCTCACGTGCGATGGGCGTCCGTCTTCCTCGGCGTAGC GCTCGTGCTCCGTTCGTCTCAGGTGGAGTGCTCTCGCGCCAGGCGCCGCC ATCATGCCACGCCCGCTACCCATACCAACGGTGATGGAAATCCCTCCCTG GTTTCACCCAAAGACGGAATGATCCGCGAGGAGTCATCCATTCCTGGCGT GTCGATCTGGACGTCGAAAACTGCGGCGTTTTCGAAAACACCAACACCAC CATCTTTGCATACCAACGCTGCGGCCACCACCTCCTACTACCGCGGCAAT GATGAGGTGGCGGTATTTTCGGGCGATTGCCAGATGGGGCTGTTACCTCA CGTGCGATGGGCGTCCGTCTTCCTCGGCGTAGCGCTCGTGCTCCGTTCGT CTCAGGTGGAGTGCTCTCGCGCCAGGCGCCGCCATCATGCCACGCCCGCT ACCCATACCAACGGTGATGGAAATCCCTCCCTGGTTTCACCCAAAGACGG AATGATCCGCGAGGAGTCATCCATTCCTGGCGTGTCGATCTGGACGTCGA AAACTGCGGCGTTTTCGAAAACACCAACACCACCATCTTTGCATACCAAC GCTGCGGCCACCACCTCCTACTACCGCGGCAATGATGAGGTGGCGGTATT TTCGGGCGATTGCCAGGACGGGAACGGGGGCATCGGAGACGCGGACGTGG AGCCCCCCTCGAGAGGGGCCAGGGAAGACCAGGACGGGAACGGGGGCATC GGAGACGCGGACGTGGAGCCCCCCTCGAGAGGGGCCAGGGAAGACCAG back to top