mRNA_L-elsbetiae_contig18422.5347.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18422.5347.1
Unique NamemRNA_L-elsbetiae_contig18422.5347.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig18422.5347.1 vs. uniprot
Match: D7FLT9_ECTSI (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLT9_ECTSI)

HSP 1 Score: 410 bits (1054), Expect = 2.880e-135
Identity = 234/358 (65.36%), Postives = 247/358 (68.99%), Query Frame = 1
Query:    1 SDMLDGLSPCVLVSNTLPGNAFLGLDWWAILMVARAVRAHGLTKVLVSERLTKTPVFGWILKILEFPGLGDCYQGDRDRVKKSLASFGRDSVSAGPSGVPYMFLHFPEGDTLNRDTLASSLEFAKREDRPELMHLLLPHTTALSACLDGLRAARPVVYDITLAAAGYTGEVPCAR-SPPSDWDVLRALVAGRAWEGGSXXXXXXXXXXXNTPPCLRLSCDCRPSQGSDAXXXXXXXXXXXXXXXXXXXXXXXXGSSGGDLCGEPSCLCRTGAGPP------PLGFSSVGSGASVGAPPAADAMGLGGRSQSVGGVTRSGSGDWGSAG-----AAGGGARGDGRRWGRGCQDIHVRIKR 1038
            SDMLDGL PCV+VSNTLPG+AF GLDWW IL VARAV AHG TKVLVS+RL  TPV GWIL++LEFPGLGDCYQ DRDRVKKSLASF RDSVSAGPSGVPYMFLHFPEG TLN +TLASSLEFA+REDRPEL HLLLPHTTALSACLDGLR A+PVVYD TLAA  Y GE+P AR SP +DWDVLRALVAGRAW GG              PPC       RP+Q SDA                         S  GD CGEPS LCRTG G        PLGF SVGS    G     D MG+G RSQ+  GV RS SGDWG  G     A GGG R D R WGRGCQDIHVRIKR
Sbjct:  231 SDMLDGLCPCVIVSNTLPGDAFQGLDWWTILQVARAVGAHGYTKVLVSQRLNSTPVLGWILRMLEFPGLGDCYQEDRDRVKKSLASFARDSVSAGPSGVPYMFLHFPEGGTLNLETLASSLEFAQREDRPELTHLLLPHTTALSACLDGLRQAKPVVYDFTLAADAYMGEIPPARRSPSTDWDVLRALVAGRAWGGGDGG---------EKPPCAG-----RPNQRSDASSA----------------------SGEGDSCGEPSGLCRTGGGAXXXXXAVPLGFGSVGSTGGAGG----DVMGIGDRSQA--GVGRSESGDWGDGGGTAEAAVGGGDRKDERTWGRGCQDIHVRIKR 546          
BLAST of mRNA_L-elsbetiae_contig18422.5347.1 vs. uniprot
Match: A0A6H5LET2_9PHAE (Acyltransf_C domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LET2_9PHAE)

HSP 1 Score: 381 bits (978), Expect = 4.170e-127
Identity = 224/359 (62.40%), Postives = 236/359 (65.74%), Query Frame = 1
Query:    7 MLDGLSPCVLVSNTLPGNAFLGLDWWAILMVARAVRAHGLTKVLVSERLTKTPVFGWILKILEFPGLGDCYQGDRDRVKKSLASFGRDSVSAGPSGVPYMFLHFPEGDTLNRDTLASSLEFAKREDRPELMHLLLPHTTALSACLDGLRAARPVVYDITLAAAGYTGEVPCAR-SPPSDWDVLRALVAGRAWEGGSXXXXXXXXXXXNTPPCLRLSCDCRPSQGSDAXXXXXXXXXXXXXXXXXXXXXXXXGSSGGDLCGEPSCLCRTGAGPP---------PLGFSSVGSGASVGAPPAADAMGLGGRSQSVGGVTRSGSGDWGSAGAAGGGARGDGRRW-----GRGCQDIHVRIKR 1038
            MLDGL PCV+VSNTLPGNAF GLDWW IL VARAV AHG TKVL S+RL  TPV GWIL++LEFPGLGDCYQ DRDRVKKSLASF RDSVSAGPSGVPYMFLHFPEG TLNR+TLASSLEFA+REDRPEL HLLLPHTTALSACLDGLR A+PVVYD TLAA  YTGE+P AR SPP+DWDVLRALVAGRAW G               PPC       RP+Q SDA                         S  GD CGEPS LCRTG             PLGF SVGS    G     DAMG+G RSQ+  GV RS SGDW                      GRGCQDIHVRIKR
Sbjct:    1 MLDGLCPCVIVSNTLPGNAFQGLDWWTILQVARAVGAHGYTKVLASQRLNNTPVLGWILRMLEFPGLGDCYQEDRDRVKKSLASFARDSVSAGPSGVPYMFLHFPEGGTLNRETLASSLEFAQREDRPELTHLLLPHTTALSACLDGLRQAKPVVYDFTLAADAYTGEIPPARRSPPTDWDVLRALVAGRAWGGEDGG---------EKPPCGG-----RPNQRSDASSA----------------------SGEGDSCGEPSGLCRTGGXXXXXXXXXXAVPLGFGSVGSTGGAGG----DAMGIGDRSQA--GVGRSESGDWXXXXXXXXXXXXXXXXXXXXXXGRGCQDIHVRIKR 317          
BLAST of mRNA_L-elsbetiae_contig18422.5347.1 vs. uniprot
Match: A0A1Q2U6T5_9STRA (Lysophosphatidate acyltransferase 3 n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A1Q2U6T5_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.780e-30
Identity = 65/170 (38.24%), Postives = 99/170 (58.24%), Query Frame = 1
Query:    1 SDMLDGLSPCVLVSNTLPGNAFLGLDWWAILMVARAVRAHGLTKVLVSERLTKTPVFGWILKILEFPGLGDCYQGDRDRVKKSLASFGRDSVSAGPSGVPYMFLHFPEGDTLNRDTLASSLEFAKREDRPELMHLLLPHTTALSACLDGLRAARPVVYDITLAAAGYTGE 510
            SDM DG++  ++V+N    + + G DWW +LMVAR +  HG  K++V E L K P+ GW+++++E+P +   +   R  +   L SF  D         P +   FPEGD ++      SL FA +E RP L+H+LLP TT  + C++ LR + P VYD+T+A  G TG+
Sbjct:   77 SDMPDGITAGIVVAN----HQYEG-DWWFMLMVARFLGLHGNVKIIVREGLKKIPLLGWLVRLVEYPFISSSWSLSRTNLFGLLRSFNADDF-------PVLLFQFPEGDRIDAKVRQQSLAFAAKEQRPHLLHVLLPRTTGFNTCIEALRTSHPPVYDMTIAIPGTTGQ 234          
BLAST of mRNA_L-elsbetiae_contig18422.5347.1 vs. uniprot
Match: A0A4D9D5I2_9STRA (PlsC domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5I2_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.250e-23
Identity = 62/173 (35.84%), Postives = 96/173 (55.49%), Query Frame = 1
Query:   10 LDGLSPCVLVSNTLPGNAFLGLDWWAILMVARAVRAHGLTKVLVSERLTKTPVFGWILKILEFPGLGDCYQGDRDRVKKSLASFGRDSVSAGPSGVPYMFLHFPEGDTLNRDTLASSLEFAKREDRPELMHLLLPHTTALSACLDGL----RAARPVVYDITLAAAGYTGEVP 516
            +D   P ++++N       +  D+W    VARA +  G  K+++   L++ PV GW ++  EF  L   +  DR  + + L SF  D       G+    L FPEG T+N ++LA S  FA+++ RP L HLLLP +T  +ACL+ +     A  P++YD+T+A  GY+GEVP
Sbjct:   26 MDSTRPAIIIANHQ-----VDADFWYCWEVARAHQLQGQLKIILKAELSQVPVVGWGMRQFEFCFLRRNWDQDRRGLTRLLCSFMED-------GLNCALLLFPEGTTINTESLAKSHRFAQQQSRPHLKHLLLPRSTGFAACLETMCQSSTAPPPLIYDLTVAYGGYSGEVP 186          
BLAST of mRNA_L-elsbetiae_contig18422.5347.1 vs. uniprot
Match: W7THY1_9STRA (Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7THY1_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.370e-23
Identity = 62/173 (35.84%), Postives = 98/173 (56.65%), Query Frame = 1
Query:   10 LDGLSPCVLVSNTLPGNAFLGLDWWAILMVARAVRAHGLTKVLVSERLTKTPVFGWILKILEFPGLGDCYQGDRDRVKKSLASFGRDSVSAGPSGVPYMFLHFPEGDTLNRDTLASSLEFAKREDRPELMHLLLPHTTALSACLDGL----RAARPVVYDITLAAAGYTGEVP 516
            +D   P ++++N       +  D+W    VARA +  G  K+++   L++ PV GW ++  EF  L   ++ DR  + + L+SF  D       G+    L FPEG T+N ++LA S  FA+++ RP L HLLLP +T  +ACL+ +     A  P++YD+T+A  GY+GEVP
Sbjct:  174 MDSTRPAIIIANHQ-----VDADFWYCWEVARAHQLQGQLKIILKAELSQVPVVGWGMRQFEFCFLRRNWEQDRRGLTRLLSSFMED-------GLNCALLLFPEGTTINTESLAKSHRFAQQQSRPRLKHLLLPRSTGFAACLETMCQSSTAPPPLIYDLTVAYGGYSGEVP 334          
BLAST of mRNA_L-elsbetiae_contig18422.5347.1 vs. uniprot
Match: A0A1Q2U6T9_9STRA (Lysophosphatidate acyltransferase 4 n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A1Q2U6T9_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.350e-19
Identity = 63/198 (31.82%), Postives = 96/198 (48.48%), Query Frame = 1
Query:   10 LDGLSPCVLVSNTLPGNAFLGLDWWAILMVARAVRAHGLTKVLVSERLTKTPVFGWILKILEFPGLGDCYQGDRDRVKKSLASFGRDSVSAGPSGVPYMFLHFPEGDTLNRDTLASSLEFAKREDRPELMHLLLPHTTALSACLDGL----RAARPVVYDITLAAAGYTGEVPCAR---SPPSDWDVLRA--LVAGRA 576
            +D   P ++++N       +  D+W +  VARA   HG  K+++   L   P+ GW +K  EF  L   +Q DR    + L+SF  D       G     L FPEG T+N + +  S  F + + RP L H +LP +T  +A ++ +        PV+YD+T+A  GY+GEVP          D DV     ++ GRA
Sbjct:  175 VDSSRPAIIIANHQ-----VDADFWYVWEVARAYGMHGRLKIILKADLAVVPIVGWGMKQFEFCFLQRNWQRDRRAFTRLLSSFVED-------GYKCALLLFPEGTTINTEAVTKSHRFGREQKRPHLDHCILPRSTGFAALVETMCQSPHGHSPVIYDLTVAYHGYSGEVPTYEMGYDREQDMDVPNVFKMIQGRA 360          
BLAST of mRNA_L-elsbetiae_contig18422.5347.1 vs. uniprot
Match: A0A6G0WJL2_9STRA (PlsC domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJL2_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.520e-19
Identity = 55/168 (32.74%), Postives = 79/168 (47.02%), Query Frame = 1
Query:   13 DGLSPCVLVSNTLPGNAFLGLDWWAILMVARAVRAHGLTKVLVSERLTKTPVFGWILKILEFPGLGDCYQGDRDRVKKSLASFGRDSVSAGPSGVPYMFLHFPEGDTLNRDTLASSLEFAKREDRPELMHLLLPHTTALSACLDGLRAARPVVYDITLAAAGYTGEVP 516
            D   P ++V N       +  DWW +    R     G  K+ + + L   PVFGW L ++EF  +      D   V + +A F            P+  L FPEG T+N +++  S  FAK  +RP L  LLLP T  L   L   +  +P +YD+TL+   Y+GEVP
Sbjct:  102 DTTKPAIIVCNHQ-----VDADWWFLWEFMRRQNGGGNVKICLKDELKYVPVFGWGLYLMEFLYVKRNLDHDSRHVAQHMARF---------EDFPFWMLLFPEGTTINAESMVKSHRFAKTTNRPHLERLLLPRTAGLETILGATQGVKPDIYDLTLSYPSYSGEVP 255          
BLAST of mRNA_L-elsbetiae_contig18422.5347.1 vs. uniprot
Match: I6R0X4_PHATR (Lysophosphatidic acid acyltransferase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=I6R0X4_PHATR)

HSP 1 Score: 94.0 bits (232), Expect = 1.830e-17
Identity = 57/134 (42.54%), Postives = 79/134 (58.96%), Query Frame = 1
Query:  184 KILEFPGL-GDCYQGDRDRVKKSLASFGRDSVSAGPSGVPYMFLHFPEGDTLNRDT-----LASSLEFAKREDRPELMHLLLPHTTALSACLDGLRAARPVVYDITLAAAGYTGEVPCA--RSPPSDWDVLRAL 561
            + LEFP L GD +  DR+++ + L SF  D+ SA     P   L FPEG +L+        LA S EFA+RE RP+L HLLLP     +A L+ LR + PVVYD+T+A +GY G +P +   + P+ W +LR  
Sbjct:  244 QFLEFPLLSGDDHTADREQLVRLLRSFAHDNASA-----PVHLLFFPEGWSLHNGADRTAILAKSNEFAQREGRPQLKHLLLPRARGFNASLECLRESSPVVYDVTMAYSGYNGSLPPSIELTFPALWKLLRGF 372          
BLAST of mRNA_L-elsbetiae_contig18422.5347.1 vs. uniprot
Match: A0A7S1UNY8_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UNY8_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.210e-14
Identity = 54/118 (45.76%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  190 LEFPGL-----GDCYQGDRDRVKKSLASFGRDSVSAGPSGVPYMFLHFPEGDTLNRDT-----LASSLEFAKREDRPELMHLLLPHTTALSACLDGLRAARPVVYDITLAAAGYTGEV 513
            LEFP L        Y  DR ++ + L SF     +A     P   L FPEG  L++ +     LA S EFAKRE RP+L HLLLP TT  +A LD L  A PVVYD+TLA +GY G++
Sbjct:   33 LEFPLLMSGENNKDYVEDRPQLFELLRSF-----AAEHEYCPVHLLLFPEGWALHQSSNKQALLARSNEFAKREGRPQLQHLLLPRTTGFNASLDSLGEANPVVYDVTLAYSGYRGQM 145          
BLAST of mRNA_L-elsbetiae_contig18422.5347.1 vs. uniprot
Match: A0A7S2KMC6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KMC6_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.100e-13
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  307 FLHFPEGDTLNRDTLASSLEFAKREDRPELMHLLLPHTTALSACLDGLRAARPVVYDITLAAAGYTGEVPCARSPPSDWDVLRALVAG 570
            FL FPEG   N D      EFA+RE RP L HLLLP TT  +A L+ LR++ P+VYD+T+A  GY G+   A S  ++W     L+ G
Sbjct:    1 FLLFPEGTDRNIDMA----EFARREGRPILKHLLLPRTTGFNASLESLRSSSPIVYDVTIAYKGYDGKA-IAPSERNEWATFWCLITG 83          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18422.5347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLT9_ECTSI2.880e-13565.361-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
A0A6H5LET2_9PHAE4.170e-12762.40Acyltransf_C domain-containing protein (Fragment) ... [more]
A0A1Q2U6T5_9STRA2.780e-3038.24Lysophosphatidate acyltransferase 3 n=1 Tax=Nannoc... [more]
A0A4D9D5I2_9STRA1.250e-2335.84PlsC domain-containing protein n=1 Tax=Nannochloro... [more]
W7THY1_9STRA1.370e-2335.84Putative 1-acyl-sn-glycerol-3-phosphate acyltransf... [more]
A0A1Q2U6T9_9STRA1.350e-1931.82Lysophosphatidate acyltransferase 4 n=1 Tax=Nannoc... [more]
A0A6G0WJL2_9STRA2.520e-1932.74PlsC domain-containing protein n=1 Tax=Aphanomyces... [more]
I6R0X4_PHATR1.830e-1742.54Lysophosphatidic acid acyltransferase n=2 Tax=Phae... [more]
A0A7S1UNY8_9STRA6.210e-1445.76Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2KMC6_9STRA2.100e-1346.59Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18422contigL-elsbetiae_contig18422:258..2700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score407.9
Seed ortholog evalue4.7e-111
Seed eggNOG ortholog2880.D7FLT9
Preferred nameLPGAT1
KEGG rclassRC00004,RC00037
KEGG koko:K13514,ko:K15176
KEGG ReactionR09036
KEGG Pathwayko00564,map00564
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003841,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010565,GO:0012505,GO:0016020,GO:0016021,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0019216,GO:0019217,GO:0019222,GO:0019637,GO:0031224,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031984,GO:0036148,GO:0036149,GO:0042171,GO:0042175,GO:0042304,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045723,GO:0045834,GO:0045923,GO:0046471,GO:0046486,GO:0046488,GO:0046889,GO:0046890,GO:0047144,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0062012,GO:0062013,GO:0065007,GO:0071617,GO:0071704,GO:0080090,GO:0090407,GO:0098827,GO:1901576
EggNOG free text desc.1-acylglycerol-3-phosphate O-acyltransferase activity
EggNOG OGsCOG0204@1,KOG1505@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004,ko03021
Ec32 ortholog description1-acyl-sn-glycerol-3-phosphate acyltransferase
Ec32 orthologEc-26_001280.1
Exons4
Model size1041
Cds size1035
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18422.5347.1prot_L-elsbetiae_contig18422.5347.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18422 264..2700 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815767.9438794-UTR-L-elsbetiae_contig18422:257..2631622815767.9438794-UTR-L-elsbetiae_contig18422:257..263Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18422 258..263 +
1691683089.4872003-UTR-L-elsbetiae_contig18422:257..2631691683089.4872003-UTR-L-elsbetiae_contig18422:257..263Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18422 258..263 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815767.955355-CDS-L-elsbetiae_contig18422:263..3891622815767.955355-CDS-L-elsbetiae_contig18422:263..389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18422 264..389 +
1691683089.499786-CDS-L-elsbetiae_contig18422:263..3891691683089.499786-CDS-L-elsbetiae_contig18422:263..389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18422 264..389 +
1622815767.9679797-CDS-L-elsbetiae_contig18422:907..9971622815767.9679797-CDS-L-elsbetiae_contig18422:907..997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18422 908..997 +
1691683089.5087485-CDS-L-elsbetiae_contig18422:907..9971691683089.5087485-CDS-L-elsbetiae_contig18422:907..997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18422 908..997 +
1622815767.9819276-CDS-L-elsbetiae_contig18422:1420..15791622815767.9819276-CDS-L-elsbetiae_contig18422:1420..1579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18422 1421..1579 +
1691683089.5190144-CDS-L-elsbetiae_contig18422:1420..15791691683089.5190144-CDS-L-elsbetiae_contig18422:1420..1579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18422 1421..1579 +
1622815768.000152-CDS-L-elsbetiae_contig18422:2040..27001622815768.000152-CDS-L-elsbetiae_contig18422:2040..2700Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18422 2041..2700 +
1691683089.5274763-CDS-L-elsbetiae_contig18422:2040..27001691683089.5274763-CDS-L-elsbetiae_contig18422:2040..2700Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18422 2041..2700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18422.5347.1

>prot_L-elsbetiae_contig18422.5347.1 ID=prot_L-elsbetiae_contig18422.5347.1|Name=mRNA_L-elsbetiae_contig18422.5347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=345bp
MLDGLSPCVLVSNTLPGNAFLGLDWWAILMVARAVRAHGLTKVLVSERLT
KTPVFGWILKILEFPGLGDCYQGDRDRVKKSLASFGRDSVSAGPSGVPYM
FLHFPEGDTLNRDTLASSLEFAKREDRPELMHLLLPHTTALSACLDGLRA
ARPVVYDITLAAAGYTGEVPCARSPPSDWDVLRALVAGRAWEGGSGGGGG
GGGRGGNTPPCLRLSCDCRPSQGSDASAAAAAAAAAAAAAAAGVGGDGDG
GSSGGDLCGEPSCLCRTGAGPPPLGFSSVGSGASVGAPPAADAMGLGGRS
QSVGGVTRSGSGDWGSAGAAGGGARGDGRRWGRGCQDIHVRIKR*
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mRNA from alignment at L-elsbetiae_contig18422:258..2700+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18422.5347.1 ID=mRNA_L-elsbetiae_contig18422.5347.1|Name=mRNA_L-elsbetiae_contig18422.5347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2443bp|location=Sequence derived from alignment at L-elsbetiae_contig18422:258..2700+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGACATGTTGGACGGGCTTTCCCCCTGCGTGCTCGTGTCCAACACCCT CCCCGGCAACGCGTTTCTCGGCCTTGACTGGTGGGCCATCCTCATGGTGG CGAGAGCGGTCAGAGCACACGGCCTAACCAAGGTAAGCCAGGGGAGGGGA GGGAAGGGGGTGTGGGGGTTGTTGGTCGTAGACCGCTGCTGCTGTCGCCA TCTTGCCACCGTGGACTACGCCTCTACTTTATAGCTGACCTGCTGCGGCT GTTTTTGCGGTTGCTGTGTGGCTCTGTATGGCGGGGCGTGACACGCGTGC ATCCGCTTCTTGCGTGTGGGTGTGTGGGTTTTGTAGTCGTAAGCTTGCCT GCCGCGGTGTCTGTCGTCACCGTGCACTTGCGACTGCTGCGGATCTCCTG TTTCTCGGCGTAACGCCTCCTTGTATTCTTGCTTGTTGTGGCACTATCGT TAATCTGTAGCGTCGGTTATATGTTCGATTCGGAGATCTAATGGATGCGG CACCGTGGCTCGACCACACAGCCCCCCCCCCCCCCAAGCTCGTGAAAGGG TTGAGCTCTCTGCAATACAGAGTAACACGAGCAAACCTCCCCAAATTGCA CCCGCTCCTCGCTTCTGTCCACAATGGCCCGCTGGTGCTGTGTGTCACAG GTGCTGGTGAGCGAAAGGCTGACCAAAACCCCGGTATTTGGTTGGATCCT TAAGATCTTGGAGTTCCCAGGGCTGGGAGACTGTTACCAGGTGACCGCCG ACGTCAATGAGATTTCCATGGGACGGGGGCGGGGGGGGGGGTTGAAAACG AGCGCAATGCAATCTCGCCCGCCAATGCTGCGCCCCTGGTATGCCTGCTT TGGTGACGGTTGCTGCTCGTGTGCTCGTGTGGAGCGGTGTGTGTGTCCGA CAGCAAAGCAAACCCCGAGGTGTTCGCGCAAAGCTCTGTGCGACTGGAAA TCATCATCACCATGACCGTCACAGCCAGGAAGAACTTTCTTGTTATTTTC CTCGATACGTACCCCCCGCGTGTCCTGCCTCGACTCCCGTACCCCCGGAA ACCCCCTGTAAAAAGAAGGGGGGAGGCACCGGCTGTCATGTTCCGAAAAC CTAGTACGTATTTACCCTAAAAAATAAAACAGCATGACCCCCGTTTTCGC CACATACGGAAAGGGGGACCGAGATCGCGTCAAGAAATCGCTCGCGTCCT TCGGCCGGGACTCCGTGTCTGCCGGGCCTTCGGGGGTCCCGTATATGTTC CTGCACTTCCCGGAGGGGGACACGCTGAACCGAGACACCCTGGCCAGCTC GCTCGAGTTCGCCAAGAGGGAGGTGGGTGCTGGTGGTGCGTGGTGTGGTG TTGGCACACAAGGTCCCTCCCTCTCTTCTGCCGTCTGGCGTCACCGAATG AACCGCTATCGTCGCCGAAATTTTACCGCTGTCAGACGGGCTGATGCAGC AGTTGTGCTTGTGCGCCTGCCGCCCGTGTTAAGAAAGATGAATGATAACT TGAACTTTCCCGCTCTCCCAGCGCGTAGATACGCGTGGATTTAACCTCCC CCCCCCCCCCCCCCCCCGGGGGGCCCCGGGCAGAATTGCCGGACGCCCCG GGGCGCGAGCCCCCCCATCCCCGCCACACGACCGCCGGGGCGGCCGCCCT NNNNNNNNNNCGCGCCGCCCGTGTTAAAAAAAATGAATAGTAACTTGAAC TTTCCCCCCCCCCCCGCCGGGAGGAACCCGTGGATTTTACCCCCCCCCCC CCCCCCCCCGGGGGGCCCCGGCGATGATTGCAGGACCGCCCGGAGCTGAT GCACCTCCTGCTGCCGCACACGACGGCGCTGTCGGCCTGCCTCGACGGCC TCCGCGCGGCCAGGCCCGTGGTCTACGACATCACCCTCGCCGCCGCCGGC TACACCGGGGAGGTCCCCTGTGCCCGCTCGCCCCCCAGCGACTGGGACGT CCTTCGCGCGCTGGTGGCGGGGCGGGCGTGGGAGGGGGGCAGCGGCGGCG GCGGCGGCGGCGGCGGCCGTGGAGGAAACACGCCGCCGTGCTTAAGACTG TCGTGCGATTGCCGCCCGAGTCAGGGGAGCGATGCTTCCGCCGCCGCGGC CGCTGCTGCCGCTGCCGCTGCTGCCGCTGCCGCTGGCGTCGGCGGAGACG GAGACGGAGGAAGCAGCGGGGGAGACTTGTGCGGAGAACCGTCGTGCCTC TGCCGCACGGGGGCAGGGCCCCCGCCCCTTGGCTTTAGCTCTGTTGGGAG CGGGGCCAGCGTCGGTGCCCCCCCGGCAGCAGACGCGATGGGGCTTGGCG GCCGGTCGCAGTCGGTGGGCGGAGTCACCCGGAGCGGGAGCGGGGACTGG GGGAGCGCCGGGGCGGCGGGTGGGGGCGCACGAGGGGACGGGCGTAGGTG GGGGAGGGGGTGTCAAGACATACACGTCCGGATCAAGAGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18422:258..2700+

>mRNA_L-elsbetiae_contig18422.5347.1 ID=mRNA_L-elsbetiae_contig18422.5347.1|Name=mRNA_L-elsbetiae_contig18422.5347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2070bp|location=Sequence derived from alignment at L-elsbetiae_contig18422:258..2700+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGGACGGGCTTTCCCCCTGCGTGCTCGTGTCCAACACCCTCCCCGG
CAACGCGTTTCTCGGCCTTGACTGGTGGGCCATCCTCATGGTGGCGAGAG
CGGTCAGAGCACACGGCCTAACCAAGATGTTGGACGGGCTTTCCCCCTGC
GTGCTCGTGTCCAACACCCTCCCCGGCAACGCGTTTCTCGGCCTTGACTG
GTGGGCCATCCTCATGGTGGCGAGAGCGGTCAGAGCACACGGCCTAACCA
AGGTGCTGGTGAGCGAAAGGCTGACCAAAACCCCGGTATTTGGTTGGATC
CTTAAGATCTTGGAGTTCCCAGGGCTGGGAGACTGTTACCAGGTGCTGGT
GAGCGAAAGGCTGACCAAAACCCCGGTATTTGGTTGGATCCTTAAGATCT
TGGAGTTCCCAGGGCTGGGAGACTGTTACCAGGGGGACCGAGATCGCGTC
AAGAAATCGCTCGCGTCCTTCGGCCGGGACTCCGTGTCTGCCGGGCCTTC
GGGGGTCCCGTATATGTTCCTGCACTTCCCGGAGGGGGACACGCTGAACC
GAGACACCCTGGCCAGCTCGCTCGAGTTCGCCAAGAGGGAGGGGGACCGA
GATCGCGTCAAGAAATCGCTCGCGTCCTTCGGCCGGGACTCCGTGTCTGC
CGGGCCTTCGGGGGTCCCGTATATGTTCCTGCACTTCCCGGAGGGGGACA
CGCTGAACCGAGACACCCTGGCCAGCTCGCTCGAGTTCGCCAAGAGGGAG
GACCGCCCGGAGCTGATGCACCTCCTGCTGCCGCACACGACGGCGCTGTC
GGCCTGCCTCGACGGCCTCCGCGCGGCCAGGCCCGTGGTCTACGACATCA
CCCTCGCCGCCGCCGGCTACACCGGGGAGGTCCCCTGTGCCCGCTCGCCC
CCCAGCGACTGGGACGTCCTTCGCGCGCTGGTGGCGGGGCGGGCGTGGGA
GGGGGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCCGTGGAGGAAACACGC
CGCCGTGCTTAAGACTGTCGTGCGATTGCCGCCCGAGTCAGGGGAGCGAT
GCTTCCGCCGCCGCGGCCGCTGCTGCCGCTGCCGCTGCTGCCGCTGCCGC
TGGCGTCGGCGGAGACGGAGACGGAGGAAGCAGCGGGGGAGACTTGTGCG
GAGAACCGTCGTGCCTCTGCCGCACGGGGGCAGGGCCCCCGCCCCTTGGC
TTTAGCTCTGTTGGGAGCGGGGCCAGCGTCGGTGCCCCCCCGGCAGCAGA
CGCGATGGGGCTTGGCGGCCGGTCGCAGTCGGTGGGCGGAGTCACCCGGA
GCGGGAGCGGGGACTGGGGGAGCGCCGGGGCGGCGGGTGGGGGCGCACGA
GGGGACGGGCGTAGGTGGGGGAGGGGGTGTCAAGACATACACGTCCGGAT
CAAGAGGTGAGACCGCCCGGAGCTGATGCACCTCCTGCTGCCGCACACGA
CGGCGCTGTCGGCCTGCCTCGACGGCCTCCGCGCGGCCAGGCCCGTGGTC
TACGACATCACCCTCGCCGCCGCCGGCTACACCGGGGAGGTCCCCTGTGC
CCGCTCGCCCCCCAGCGACTGGGACGTCCTTCGCGCGCTGGTGGCGGGGC
GGGCGTGGGAGGGGGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCCGTGGA
GGAAACACGCCGCCGTGCTTAAGACTGTCGTGCGATTGCCGCCCGAGTCA
GGGGAGCGATGCTTCCGCCGCCGCGGCCGCTGCTGCCGCTGCCGCTGCTG
CCGCTGCCGCTGGCGTCGGCGGAGACGGAGACGGAGGAAGCAGCGGGGGA
GACTTGTGCGGAGAACCGTCGTGCCTCTGCCGCACGGGGGCAGGGCCCCC
GCCCCTTGGCTTTAGCTCTGTTGGGAGCGGGGCCAGCGTCGGTGCCCCCC
CGGCAGCAGACGCGATGGGGCTTGGCGGCCGGTCGCAGTCGGTGGGCGGA
GTCACCCGGAGCGGGAGCGGGGACTGGGGGAGCGCCGGGGCGGCGGGTGG
GGGCGCACGAGGGGACGGGCGTAGGTGGGGGAGGGGGTGTCAAGACATAC
ACGTCCGGATCAAGAGGTGA
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