mRNA_L-elsbetiae_contig18411.5346.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18411.5346.1
Unique NamemRNA_L-elsbetiae_contig18411.5346.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig18411.5346.1 vs. uniprot
Match: D7FSC3_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSC3_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 3.300e-81
Identity = 129/138 (93.48%), Postives = 132/138 (95.65%), Query Frame = 1
Query:   16 QEKRLFPSAHLVRVLACANAGLGVLYLHWRYTETFPPGLSRSDYKAWKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITAVDDQVGYNARVCILLPTAGENLEVVFKALVGALSQRLWDSGLPGSQTLR 429
            QEKRLFPSAHLVRVLA ANAGLGVLYLHWRYT TFPP + R DY +WKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDIT+VDDQVGYNARVCILLPTAGENLEVVFKALVGALSQRLWDSGLPGSQTLR
Sbjct:  258 QEKRLFPSAHLVRVLAVANAGLGVLYLHWRYTSTFPPTVGRWDYMSWKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITSVDDQVGYNARVCILLPTAGENLEVVFKALVGALSQRLWDSGLPGSQTLR 395          
BLAST of mRNA_L-elsbetiae_contig18411.5346.1 vs. uniprot
Match: D7FN39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN39_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 4.220e-60
Identity = 90/99 (90.91%), Postives = 93/99 (93.94%), Query Frame = 1
Query:   16 QEKRLFPSAHLVRVLACANAGLGVLYLHWRYTETFPPGLSRSDYKAWKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITAVDDQVGYNAR 312
            QEKRLFPSAHLVRVLA ANAGLGVLYLHWRYT TFPP + R DY +WKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDIT+VDDQVGYNAR
Sbjct:   35 QEKRLFPSAHLVRVLAVANAGLGVLYLHWRYTSTFPPTVGRWDYMSWKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITSVDDQVGYNAR 133          
BLAST of mRNA_L-elsbetiae_contig18411.5346.1 vs. uniprot
Match: A0A836CP13_9STRA (Glyco_trans_2-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP13_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.420e-26
Identity = 59/131 (45.04%), Postives = 78/131 (59.54%), Query Frame = 1
Query:   34 PSAHLVRVLACANAGLGVLYLHWRYTETFPP------GLSRSDYKAWKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITAVDDQVGYNARVCILLPTAGENLEVVFKALVGALSQRLWDSGL 408
            PSA ++R +   N  +   YL WR T T         G+     + W     W F++ E  L IA+W+G  QRLF VQR+++TMDDI   DD VGYN+RV ILLPT GE L+VV KAL+G +S R WD+ +
Sbjct:  343 PSAFVIRAIVVLNICVSCAYLWWRVTRTIFQIDDYFFGIPFLPVQGWA----WAFYAVEICLTIAIWIGHTQRLFAVQRVRLTMDDIVREDDSVGYNSRVAILLPTNGEKLDVVMKALLGVVSLRGWDTSV 469          
BLAST of mRNA_L-elsbetiae_contig18411.5346.1 vs. uniprot
Match: D7FSC4_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSC4_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 3.070e-25
Identity = 64/134 (47.76%), Postives = 80/134 (59.70%), Query Frame = 1
Query:    7 ITYQEKRLFPSAHLVRVLACANAGLGVLYLHWRY--TETFPPGLSRSDYKAWKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITAVDDQVGYNARVCILLPTAGENLEVVFKALVGALSQRLWDS 402
            I  Q K  F S+ L+R +   N   G  Y+ WR+  T+  PP     +YK W      +FF  E FL  A+W+G +QRLF VQRI+ TMD I ++D  VG NA V ILLPTAGE L+VV K L+GA SQR W S
Sbjct:   79 INPQTKESFSSSFLIRGVVVLNVASGFTYMVWRFLKTQDVPP-----EYK-WXXX---VFFMVEVFLLFAIWLGHSQRLFAVQRIRTTMDQIVSIDPAVGANAVVAILLPTAGERLDVVLKCLLGASSQRSWPS 203          
BLAST of mRNA_L-elsbetiae_contig18411.5346.1 vs. uniprot
Match: A0A835ZCE1_9STRA (Cellulose synthase, family GT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCE1_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.290e-23
Identity = 56/127 (44.09%), Postives = 76/127 (59.84%), Query Frame = 1
Query:   37 SAHLVRVLACANAGLGVLYLHWRYTETFPPGLSRSDYKAWKLY----WWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITAVDDQVGYNARVCILLPTAGENLEVVFKALVGALSQRLWDSG 405
            S  L+R++  AN G   LYL+WR T T    +    Y   K +    W W+F+  E  L I + +G  QR+FP++R  V M+D+   DD VGYNARV ILLP+AGE L++V  AL+GA+SQ  W  G
Sbjct:  218 STPLLRLIMAANVGFSALYLYWRATSTITT-IDTYFYNI-KYFPVQIWAWVFYGVEICLTIGILIGHTQRMFPIKRAIVAMEDLVREDDCVGYNARVAILLPSAGERLDIVMLALLGAMSQSTWRGG 342          
BLAST of mRNA_L-elsbetiae_contig18411.5346.1 vs. uniprot
Match: A0A835YVP7_9STRA (Cellulose synthase, family GT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 8.810e-19
Identity = 53/130 (40.77%), Postives = 68/130 (52.31%), Query Frame = 1
Query:   37 SAHL-VRVLACANAGLGVLYLHWRYTETFPP------GLSRSDYKAWKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITAVDDQVGYNARVCILLPTAGENLEVVFKALVGALSQRLWDSG 405
            S+HL +R +  AN    VLYL WR T T         G+     +AW     W F++ E  L I +W+G +QRLF V                  YNARVCILLPTAGE L++V  AL+G +SQR+W  G
Sbjct:   18 SSHLLIRCVILANLAFSVLYLWWRVTSTITTINSYFFGIKALPVQAWG----WTFYAVEICLTIGIWIGHSQRLFAVS----------------SYNARVCILLPTAGERLDIVMLALLGCISQRMWACG 127          
BLAST of mRNA_L-elsbetiae_contig18411.5346.1 vs. uniprot
Match: A0A835YSM9_9STRA (Cellulose synthase, family GT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSM9_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.930e-16
Identity = 50/125 (40.00%), Postives = 70/125 (56.00%), Query Frame = 1
Query:   34 PSAHLVRVLACANAGLGVLYLHWRYTETFPPGLSRSDYKAWKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITAVDDQVGYNARVCILLPTAGENLEVVFKALVGALSQRLWDSGL 408
            PSA ++R +   N G+ + YL+WR T T    ++  D                +F  I  W+       PV RIK+TMD++   DD VGYN+RV ILLPT GENL+VV KA++G +S R WD+ +
Sbjct:  118 PSAMVIRAIVIINIGVSLAYLYWRVTHT----ITNID---------------SYFFGIT-WL-------PV-RIKMTMDELVREDDSVGYNSRVAILLPTNGENLDVVMKAMLGCISLRGWDASV 214          
BLAST of mRNA_L-elsbetiae_contig18411.5346.1 vs. uniprot
Match: A0A835YIK8_9STRA (Cellulose synthase, family GT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIK8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 7.210e-13
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  166 WWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITAVDDQVGYNARVCILLPTAGENLEVVFKALVGALSQRLWDSGLPGSQTLR 429
            W ++FF AE  L + + V    R FP+ R +VTMD++   D Q G + +V ILLPTAGE L+V+ +AL G L  RLW S      TLR
Sbjct:   27 WGYIFFGAEVLLIVGLLVSHVSRAFPIHRERVTMDELVDSDPQTG-DLKVAILLPTAGEKLQVMLQALFGVLQLRLWSSSRARCDTLR 113          
BLAST of mRNA_L-elsbetiae_contig18411.5346.1 vs. uniprot
Match: A0A835Z7S9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7S9_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.630e-11
Identity = 48/159 (30.19%), Postives = 73/159 (45.91%), Query Frame = 1
Query:    1 MLITYQEKRLFPSAHLVRVLACANAGLGVLYLHWRYTETFPPGLSRSDYKAWKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDI----TAVDD----------------------QVGYNARVCILLPTAGENLEVVFKALVGALSQRLWD 399
            ML+   +  L P+A L+R +   N  LG  YL WR T++ P         A+     +++   E  L +++W+    RL P  R  + +DD+     A+D                        +   ARV ILLPTAGE L V+ +AL+G  SQ+LW+
Sbjct:  190 MLVAGLQVTLHPTAGLIRAVFACNLVLGARYLLWRCTKSLPLEDGSPAATAYA----YIYLLCEAILVMSIWMSHCTRLLPAVRPIIRVDDLIEASNALDTLQMANAADAGSRAPSEQQPGLISIAEEARVAILLPTAGEGLPVLLRALLGCFSQKLWE 344          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18411.5346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FSC3_ECTSI3.300e-8193.48Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
D7FN39_ECTSI4.220e-6090.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CP13_9STRA1.420e-2645.04Glyco_trans_2-like domain-containing protein n=1 T... [more]
D7FSC4_ECTSI3.070e-2547.76Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
A0A835ZCE1_9STRA1.290e-2344.09Cellulose synthase, family GT2 n=1 Tax=Tribonema m... [more]
A0A835YVP7_9STRA8.810e-1940.77Cellulose synthase, family GT2 n=1 Tax=Tribonema m... [more]
A0A835YSM9_9STRA5.930e-1640.00Cellulose synthase, family GT2 n=1 Tax=Tribonema m... [more]
A0A835YIK8_9STRA7.210e-1345.45Cellulose synthase, family GT2 n=1 Tax=Tribonema m... [more]
A0A835Z7S9_9STRA1.630e-1130.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18411contigL-elsbetiae_contig18411:560..1704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue2.4e-21
Seed eggNOG ortholog2880.D7FSC4
KEGG rclassRC00005
KEGG koko:K00694,ko:K10999,ko:K20924
KEGG TC4.D.3.1.2,4.D.3.1.4,4.D.3.1.5,4.D.3.1.6,4.D.3.1.7,4.D.3.1.9
KEGG ReactionR02889
KEGG Pathwayko00500,ko01100,ko02026,map00500,map01100,map02026
Hectar predicted targeting categorysignal anchor
GOsGO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005938,GO:0005975,GO:0005976,GO:0006073,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009250,GO:0009653,GO:0009987,GO:0010927,GO:0016020,GO:0016043,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0016759,GO:0016760,GO:0022607,GO:0030154,GO:0030243,GO:0030244,GO:0030435,GO:0030587,GO:0031150,GO:0031154,GO:0032502,GO:0032989,GO:0033692,GO:0034637,GO:0034645,GO:0035251,GO:0042244,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043934,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044448,GO:0044464,GO:0045177,GO:0045179,GO:0045229,GO:0046527,GO:0048646,GO:0048856,GO:0048869,GO:0051273,GO:0051274,GO:0051703,GO:0051704,GO:0070590,GO:0070726,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0090702,GO:0099120,GO:0099568,GO:0099738,GO:1901576
EggNOG free text desc.Cellulose synthase
EggNOG OGs2QQSH@2759,COG1215@1
EC2.4.1.12
COG Functional cat.M
CAZyGT2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003,ko02000
Exons3
Model size429
Cds size429
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18411.5346.1prot_L-elsbetiae_contig18411.5346.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18411 560..1704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815767.8823895-CDS-L-elsbetiae_contig18411:559..6581622815767.8823895-CDS-L-elsbetiae_contig18411:559..658Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18411 560..658 +
1691683089.4561794-CDS-L-elsbetiae_contig18411:559..6581691683089.4561794-CDS-L-elsbetiae_contig18411:559..658Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18411 560..658 +
1622815767.8934813-CDS-L-elsbetiae_contig18411:939..11511622815767.8934813-CDS-L-elsbetiae_contig18411:939..1151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18411 940..1151 +
1691683089.4685223-CDS-L-elsbetiae_contig18411:939..11511691683089.4685223-CDS-L-elsbetiae_contig18411:939..1151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18411 940..1151 +
1622815767.904097-CDS-L-elsbetiae_contig18411:1586..17041622815767.904097-CDS-L-elsbetiae_contig18411:1586..1704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18411 1587..1704 +
1691683089.4768438-CDS-L-elsbetiae_contig18411:1586..17041691683089.4768438-CDS-L-elsbetiae_contig18411:1586..1704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18411 1587..1704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18411.5346.1

>prot_L-elsbetiae_contig18411.5346.1 ID=prot_L-elsbetiae_contig18411.5346.1|Name=mRNA_L-elsbetiae_contig18411.5346.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MLITYQEKRLFPSAHLVRVLACANAGLGVLYLHWRYTETFPPGLSRSDYK
AWKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITAVDDQVG
YNARVCILLPTAGENLEVVFKALVGALSQRLWDSGLPGSQTLR
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mRNA from alignment at L-elsbetiae_contig18411:560..1704+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18411.5346.1 ID=mRNA_L-elsbetiae_contig18411.5346.1|Name=mRNA_L-elsbetiae_contig18411.5346.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1145bp|location=Sequence derived from alignment at L-elsbetiae_contig18411:560..1704+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTATAACTTATCAGGAGAAGAGGCTGTTCCCGTCGGCCCATCTGGT GCGCGTTTTGGCTTGCGCCAATGCCGGCCTCGGCGTCCTCTACTTGCACG TGAGTTTTTTATTGTTGTTGTTTCTGGGGCTGTTGTCTTTTGTCTCCTGT GCAGAGACACGCGTCCACTGCTGCTTCTGCTGCTCTTCCTGCCTTTGTAA TGATTGCCGCAGGCACACATGCTCTCCCGCCGCGTTCGCTCGCTTCCCTG CTTCCGTGCCATGTTGTTCGCCTGAAACCTGAAATCGTGTTTATTTTGTT CTGTGTTCCTTTGATGTTTGCCTGAAATCTCAAATCGTGTTTATTTTTTA TCTGTGTTCCATTATTTGATTATTTGTCAGTGGCGGTACACCGAGACCTT CCCGCCAGGGCTGTCCCGGTCGGACTACAAGGCGTGGAAGTTGTACTGGT GGTGGCTTTTCTTCTCGGCCGAGTTCTTCCTGGCCATCGCCGTGTGGGTG GGTCTGGCGCAACGCCTGTTCCCCGTGCAGAGGATCAAGGTCACCATGGA CGACATCACCGCCGTCGATGATCAAGTCGGCTACAACGCGCGGTGAGAGA AAGGCAGGGTGGGGCCAAGGCTTGGATCGTGTGTGGTGCCTGCATGCCTT CCTGCCTGCCTGTCTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCGCGCCCGCCCGCCCCCCCCTCCCCCCCCCCCCACGGACNNNNNNNN NNGGGGGGGGGGGGGGGGGGTTGGTGGTGGTGTGGGGGCCCCTTCCCTTC CTCCCCCCCTTGTTCCCCCCCCCCCCCCCCCCCCCCTCGATATCTACGTG GCAGCGTTGCGTCTCCAACAGCAGCCCACCAGAGTCGGGTCGCGCCCACG TGATGCTCAACTATTAATTCAAGCTAAATTTACAAAACATACGCTGCCAC TTCACGCCGTCCTTTCTCTCTCTCTCTCTCCCCCCCCCCCCCTCCCCCCC CTTTTTTTTCGAACTTGGGGATTTCAGGGTGTGCATCCTGCTGCCCACCG CCGGTGAGAACCTCGAGGTCGTGTTCAAGGCGCTCGTCGGGGCGCTCTCG CAGCGGCTGTGGGACTCCGGTCTGCCCGGCAGCCAGACCCTTCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18411:560..1704+

>mRNA_L-elsbetiae_contig18411.5346.1 ID=mRNA_L-elsbetiae_contig18411.5346.1|Name=mRNA_L-elsbetiae_contig18411.5346.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig18411:560..1704+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTATAACTTATCAGGAGAAGAGGCTGTTCCCGTCGGCCCATCTGGT
GCGCGTTTTGGCTTGCGCCAATGCCGGCCTCGGCGTCCTCTACTTGCACA
TGCTTATAACTTATCAGGAGAAGAGGCTGTTCCCGTCGGCCCATCTGGTG
CGCGTTTTGGCTTGCGCCAATGCCGGCCTCGGCGTCCTCTACTTGCACTG
GCGGTACACCGAGACCTTCCCGCCAGGGCTGTCCCGGTCGGACTACAAGG
CGTGGAAGTTGTACTGGTGGTGGCTTTTCTTCTCGGCCGAGTTCTTCCTG
GCCATCGCCGTGTGGGTGGGTCTGGCGCAACGCCTGTTCCCCGTGCAGAG
GATCAAGGTCACCATGGACGACATCACCGCCGTCGATGATCAAGTCGGCT
ACAACGCGCGTGGCGGTACACCGAGACCTTCCCGCCAGGGCTGTCCCGGT
CGGACTACAAGGCGTGGAAGTTGTACTGGTGGTGGCTTTTCTTCTCGGCC
GAGTTCTTCCTGGCCATCGCCGTGTGGGTGGGTCTGGCGCAACGCCTGTT
CCCCGTGCAGAGGATCAAGGTCACCATGGACGACATCACCGCCGTCGATG
ATCAAGTCGGCTACAACGCGCGGGTGTGCATCCTGCTGCCCACCGCCGGT
GAGAACCTCGAGGTCGTGTTCAAGGCGCTCGTCGGGGCGCTCTCGCAGCG
GCTGTGGGACTCCGGTCTGCCCGGCAGCCAGACCCTTCGCGGTGTGCATC
CTGCTGCCCACCGCCGGTGAGAACCTCGAGGTCGTGTTCAAGGCGCTCGT
CGGGGCGCTCTCGCAGCGGCTGTGGGACTCCGGTCTGCCCGGCAGCCAGA
CCCTTCGC
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