mRNA_L-elsbetiae_contig1841.5345.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1841.5345.1
Unique NamemRNA_L-elsbetiae_contig1841.5345.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1841.5345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1841contigL-elsbetiae_contig1841:15087..17508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size973
Cds size732
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1841.5345.1prot_L-elsbetiae_contig1841.5345.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1841 16040..17508 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815767.7321243-UTR-L-elsbetiae_contig1841:15086..151661622815767.7321243-UTR-L-elsbetiae_contig1841:15086..15166Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1841 15087..15166 -
1691683089.3728244-UTR-L-elsbetiae_contig1841:15086..151661691683089.3728244-UTR-L-elsbetiae_contig1841:15086..15166Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1841 15087..15166 -
1622815767.7458527-UTR-L-elsbetiae_contig1841:15629..157151622815767.7458527-UTR-L-elsbetiae_contig1841:15629..15715Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1841 15630..15715 -
1691683089.3819292-UTR-L-elsbetiae_contig1841:15629..157151691683089.3819292-UTR-L-elsbetiae_contig1841:15629..15715Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1841 15630..15715 -
1622815767.756056-UTR-L-elsbetiae_contig1841:15964..160391622815767.756056-UTR-L-elsbetiae_contig1841:15964..16039Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1841 15965..16039 -
1691683089.3901327-UTR-L-elsbetiae_contig1841:15964..160391691683089.3901327-UTR-L-elsbetiae_contig1841:15964..16039Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1841 15965..16039 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815767.7658012-CDS-L-elsbetiae_contig1841:16039..165961622815767.7658012-CDS-L-elsbetiae_contig1841:16039..16596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1841 16040..16596 -
1691683089.401592-CDS-L-elsbetiae_contig1841:16039..165961691683089.401592-CDS-L-elsbetiae_contig1841:16039..16596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1841 16040..16596 -
1622815767.7776241-CDS-L-elsbetiae_contig1841:16763..168251622815767.7776241-CDS-L-elsbetiae_contig1841:16763..16825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1841 16764..16825 -
1691683089.4142034-CDS-L-elsbetiae_contig1841:16763..168251691683089.4142034-CDS-L-elsbetiae_contig1841:16763..16825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1841 16764..16825 -
1622815767.790208-CDS-L-elsbetiae_contig1841:17395..175081622815767.790208-CDS-L-elsbetiae_contig1841:17395..17508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1841 17396..17508 -
1691683089.423445-CDS-L-elsbetiae_contig1841:17395..175081691683089.423445-CDS-L-elsbetiae_contig1841:17395..17508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1841 17396..17508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1841.5345.1

>prot_L-elsbetiae_contig1841.5345.1 ID=prot_L-elsbetiae_contig1841.5345.1|Name=mRNA_L-elsbetiae_contig1841.5345.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=244bp
PSLAKSSSKRSPIHPWPTHLSRHSSSRSFSAPRPRRNRIQARMPTAARAV
WLQENRTQGHGAPNDGVLAESSTTGRCKSGRCRHGSRPAQSSSQLSHRES
SPPPLASSCGCHPFSTASQAGNLGRASQGAARTYSLSLRTSASRELLPQG
RRCRGDAFFRQWLPPTTLEEAAHPPPARSKFPRLWARTEEQRATGKCLCP
PAPKPTRGQPSFAKPVLDMLLPMFVKPRLHAVALYIVLRSRFR*
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mRNA from alignment at L-elsbetiae_contig1841:15087..17508-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1841.5345.1 ID=mRNA_L-elsbetiae_contig1841.5345.1|Name=mRNA_L-elsbetiae_contig1841.5345.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2422bp|location=Sequence derived from alignment at L-elsbetiae_contig1841:15087..17508- (Laminarionema elsbetiae ELsaHSoW15)
CCGTCACTCGCCAAATCCAGCAGCAAACGCTCACCGATCCATCCGTGGCC
CACGCACCTCAGCCGCCACAGCAGCTCACGTTCGTTCAGCGCGCCGCGGC
CTCGGCGAAACAGGTAAAACTCGAGTGAAAGAAAGTCCTCCTTGACGCAA
TAGATGAGCAGCACGCTGCCCGCAGTGTCTACACCAATGTCTTTCAGGAA
AGGGAAGCTGACGGGGCTCGTGCAGTGACCGATGGCAACGTTAATAGGCC
ATTTTTTCAACGCCCAAGCCGCTTTTCACCAGCGCAAGAAAATTTTGAAG
CAACACGCAAGACATGCATCTGCACACCTACACTCACCATCGGTGGCATG
CTCACACTATTGTACTGTTGGGTTTCGGTGCTGCCCCCCTCCACACACAC
ACACGCTCGTGATTCTCCCATTCTCGCTTGCACGGTCAGTCCGAGCCCTC
GCACCTCGAGGACCTTCCGCTCCCACGATTTGGACTGGTCTTACTACAGG
CGGCGTCAATCACTCTCAGCCCAACATCCAGATTTTGAAGGCACCCAGGG
CTACGAACATATTGTTACATAGCGAGGTCAACAACACCAGCAGCAAACCA
CCACTACCACTACCAACAGCAACATCAACAATAGCAACCTCCACCACGTT
TGTTTGTCCTTTGCGATTTATTGAATGCGGCAGGATCCAAGCCAGAATGC
CTACGGCTGCACGGGCAGTATGGCTGCAGGAAAATCGGACACAAGGTGAG
GCTTGGCCTGATACTACGTGGGTTACGACAGCTATACCATTCATGTATCT
ATTGAGTGTGTAGCATTGCTGTTGATGGCCTGCTTGCACCACCAACCCCT
TGGGCTGGCTACCTCTGCACATCGATTTCCCTTGGTGCTTCCGTTCACGC
CGGATGAGGCAGGTCATGGCGCGCCCAATGACGGAGTCTTGGCAGAATCA
AGCACCACCGGTCGTTGCAAGTCCGGCCGCTGTCGGCATGGCTCCCGCCC
GGCGCAATCCTCCTCGCAGCTTAGTCACCGAGAGTCGTCGCCCCCCCCGC
TAGCTTCATCCTGCGGATGCCACCCCTTCAGCACCGCTTCGCAGGCCGGG
AACCTTGGTCGAGCATCGCAGGGTGCCGCTCGGACGTACTCCTTAAGCCT
ACGCACCAGCGCATCCCGGGAGCTACTTCCTCAGGGTCGGCGCTGCCGGG
GCGACGCTTTCTTCAGGCAATGGTTGCCACCGACAACGCTGGAAGAAGCT
GCGCATCCCCCACCGGCACGATCGAAGTTTCCGAGGTTGTGGGCGCGAAC
GGAGGAACAACGTGCGACGGGGAAGTGTCTCTGTCCACCTGCCCCGAAAC
CGACGCGGGGGCAGCCTTCTTTCGCAAAGCCGGTACTGGACATGCTGCTG
CCCATGTTTGTCAAACCAAGGCTACACGCCGTAGCGCTCTACATCGTTCT
ACGCTCGAGGTTTCGGTGACTGACAGGACCGTTCCGCCCGCACGCTTCGC
CGGAGGCTCCGCACAACGCGCCAAGGAGGCAATACCGCCGATCGGTGGGT
GACACATCCTCGGTGTTCTACATCCTAGGCGCCAGTATACGTGTTGACAC
GTATGTAGTATGTTGATGATCCCCACGAGGCATGGAATAGTATTTGACGA
AACCGAACCTGAAGCACCGCCATGAGCAGGACCGCCTGTAAACAAAGTGT
CTGGCCTCATCATCCAAAAAAACGGCTGCCAGACCCTTTCCACACTTTGG
GTGCCTTCGACGTGAATGCTTTCTCCACCATGGCCCTTGCCAGCAAAACC
AGGAACAAAGAGAAGCGGGTGGATCGCGACCATGCAGCCCAGCGGAGAAG
GAGAACCAGACCGTTGCAGAGGCGGGCAGGTAGGCTGACGACCATTGCCG
ATACCTGCTTCCGTCACGTTGGCGTTTAGGTCAGCTCAAATGTTAGGCCA
TAGAAAGGGTTGTGGACAGAAAACGTCACAGGATGCAGGTGCTGAGCCGG
CCGGCTGTGCTGCATAATTTCACTCTGCGTTCAACCGCTGAGCCGGCTGT
GCTGCATAATTTCACTCTGCGTTCAACCGCTGAAGCTCTCCGAGAATTGA
AAACAGTGATGGAGTTGCTGTATCGTGCATAAGGCTGGTGCGACGATAGA
CTCACCGAGACCACCTGCAGCAACCAAGGTGTCGGACTGCCGAACATGTT
TGCGCTTTAAATTCAAAAACATTGCTTGCCTCTGTATCCTTGTTGTAAAG
GCAAGACATGCTGAACTTCTCTCCGCAAACTGTACTGCCTCCCTTACTAC
CTTGCCACGCGGGTCGGTTGGCGCCTTCACCCGCGGCAGCAGCTGGGCTG
GCGCTATCAGGATCCCGCGTGGAAGGGTCGGGTTTTACCAAACTTCGGGA
TGTAAACCCTGATGGGTTTGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1841:15087..17508-

>mRNA_L-elsbetiae_contig1841.5345.1 ID=mRNA_L-elsbetiae_contig1841.5345.1|Name=mRNA_L-elsbetiae_contig1841.5345.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1464bp|location=Sequence derived from alignment at L-elsbetiae_contig1841:15087..17508- (Laminarionema elsbetiae ELsaHSoW15)
CCGTCACTCGCCAAATCCAGCAGCAAACGCTCACCGATCCATCCGTGGCC
CACGCACCTCAGCCGCCACAGCAGCTCACGTTCGTTCAGCGCGCCGCGGC
CTCGGCGAAACAGCCGTCACTCGCCAAATCCAGCAGCAAACGCTCACCGA
TCCATCCGTGGCCCACGCACCTCAGCCGCCACAGCAGCTCACGTTCGTTC
AGCGCGCCGCGGCCTCGGCGAAACAGGATCCAAGCCAGAATGCCTACGGC
TGCACGGGCAGTATGGCTGCAGGAAAATCGGACACAAGGATCCAAGCCAG
AATGCCTACGGCTGCACGGGCAGTATGGCTGCAGGAAAATCGGACACAAG
GTCATGGCGCGCCCAATGACGGAGTCTTGGCAGAATCAAGCACCACCGGT
CGTTGCAAGTCCGGCCGCTGTCGGCATGGCTCCCGCCCGGCGCAATCCTC
CTCGCAGCTTAGTCACCGAGAGTCGTCGCCCCCCCCGCTAGCTTCATCCT
GCGGATGCCACCCCTTCAGCACCGCTTCGCAGGCCGGGAACCTTGGTCGA
GCATCGCAGGGTGCCGCTCGGACGTACTCCTTAAGCCTACGCACCAGCGC
ATCCCGGGAGCTACTTCCTCAGGGTCGGCGCTGCCGGGGCGACGCTTTCT
TCAGGCAATGGTTGCCACCGACAACGCTGGAAGAAGCTGCGCATCCCCCA
CCGGCACGATCGAAGTTTCCGAGGTTGTGGGCGCGAACGGAGGAACAACG
TGCGACGGGGAAGTGTCTCTGTCCACCTGCCCCGAAACCGACGCGGGGGC
AGCCTTCTTTCGCAAAGCCGGTACTGGACATGCTGCTGCCCATGTTTGTC
AAACCAAGGCTACACGCCGTAGCGCTCTACATCGTTCTACGCTCGAGGTT
TCGGTGAGTCATGGCGCGCCCAATGACGGAGTCTTGGCAGAATCAAGCAC
CACCGGTCGTTGCAAGTCCGGCCGCTGTCGGCATGGCTCCCGCCCGGCGC
AATCCTCCTCGCAGCTTAGTCACCGAGAGTCGTCGCCCCCCCCGCTAGCT
TCATCCTGCGGATGCCACCCCTTCAGCACCGCTTCGCAGGCCGGGAACCT
TGGTCGAGCATCGCAGGGTGCCGCTCGGACGTACTCCTTAAGCCTACGCA
CCAGCGCATCCCGGGAGCTACTTCCTCAGGGTCGGCGCTGCCGGGGCGAC
GCTTTCTTCAGGCAATGGTTGCCACCGACAACGCTGGAAGAAGCTGCGCA
TCCCCCACCGGCACGATCGAAGTTTCCGAGGTTGTGGGCGCGAACGGAGG
AACAACGTGCGACGGGGAAGTGTCTCTGTCCACCTGCCCCGAAACCGACG
CGGGGGCAGCCTTCTTTCGCAAAGCCGGTACTGGACATGCTGCTGCCCAT
GTTTGTCAAACCAAGGCTACACGCCGTAGCGCTCTACATCGTTCTACGCT
CGAGGTTTCGGTGA
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