mRNA_L-elsbetiae_contig1840.5341.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1840.5341.1 vs. uniprot
Match: D8LH58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH58_ECTSI) HSP 1 Score: 834 bits (2154), Expect = 1.860e-299 Identity = 431/530 (81.32%), Postives = 466/530 (87.92%), Query Frame = 1 Query: 46 MRPWNYFALMSSIGFGLQRGFGYAFTSSTFRGPVATGTVARSAIAPSRRRGRSSTAVRMASSFDPIKAAQAVKEAMDGGGKVNPVYRQMVVLAVSSGAAGATRYFKPSGQG---TDRRGLTKAIQAHVGQLMDAVLSPKPDEENAQAIARILDRCEEQHKGAGATLALGYLDTVWWLPAPIRPEIGALAILAVYEALRRFGVFTRFGTVKLPDAELVPTGNIPDPIEDMEDTPIFKAAQFETDARVLSYYTLIGAFLFSTLSYVVSGCDGHMAWTGILMLSFVAFEREVLHSALYSEAIIRIQPMLVHLTSAHEAGHVAAAYLTGLPVATYTLGGLGSLQHGDEVGCGPSCNIINAELSTARIWLPEELLTGPSSLPEQPRLNAHMTYPWEDPARLPNLLALDFSSSEIPNEDRVAPFDTKGRHAMSNRMALTSMGGIAGEMMANGFDVGGGADYFNMRRRFKGLWPYMSQDDLRITEKWAFLENLHIFQAERTAMELLAKNMRERRSIGRLMLDLDRSLAATEYELTAA 1626 MRPW L++SIG G QRGFGYAFTSS + + ++ A SRR SST +RMASSF+PI +AVKEAM G G+VNPVYRQMVVLAV SGAAGA RY PSG+ T +R L KA+QAHVGQLMDAVLSP PDEENA+AI RILDRCEEQHKGAGATLALGYLDTVWWLPAPIRP IGALAILAVYEALRRFGVFTRFG VKLPD EL PT +P+P+E MED+PIFKAAQFETDAR LSYYTLIGAFL ST+SYV+SG DG +AW+G+L+L+FVAFEREVLHSALYSEAIIR+QPML LTSAHEAGHVAAAYLTGLPVATYTLGGLGSLQHGDEVGCGPSCNIINAELSTARIWLPEELLTGP+S PE PRL A MTYPWEDPARL NL+ LDFSSSEIP++DRVAPFDT+GRHAMSNRMALTSMGGIAGEMMANGFDVGGGADYFNMRRRFKGLWPYMSQDDLR TEKWAFLENL IF+AERTAMELLAKNMRERR IGRLMLDLDRSL +TE+EL+AA Sbjct: 1 MRPWTALGLIASIGVGFQRGFGYAFTSSKV---TSFPSSSKGTPASSRRHAMSSTQLRMASSFNPI---EAVKEAMGGDGRVNPVYRQMVVLAVKSGAAGAARYLNPSGESSTSTGKRALNKAVQAHVGQLMDAVLSPAPDEENAEAIKRILDRCEEQHKGAGATLALGYLDTVWWLPAPIRPAIGALAILAVYEALRRFGVFTRFGMVKLPDTELAPTETVPEPVEGMEDSPIFKAAQFETDARSLSYYTLIGAFLVSTMSYVISGGDGQVAWSGMLLLTFVAFEREVLHSALYSEAIIRVQPMLTQLTSAHEAGHVAAAYLTGLPVATYTLGGLGSLQHGDEVGCGPSCNIINAELSTARIWLPEELLTGPASEPE-PRLEARMTYPWEDPARLQNLVELDFSSSEIPHKDRVAPFDTEGRHAMSNRMALTSMGGIAGEMMANGFDVGGGADYFNMRRRFKGLWPYMSQDDLRRTEKWAFLENLKIFKAERTAMELLAKNMRERRPIGRLMLDLDRSLTSTEFELSAA 523 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1840.5341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1840.5341.1 >prot_L-elsbetiae_contig1840.5341.1 ID=prot_L-elsbetiae_contig1840.5341.1|Name=mRNA_L-elsbetiae_contig1840.5341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=531bp MRPWNYFALMSSIGFGLQRGFGYAFTSSTFRGPVATGTVARSAIAPSRRRback to top mRNA from alignment at L-elsbetiae_contig1840:13411..19557+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1840.5341.1 ID=mRNA_L-elsbetiae_contig1840.5341.1|Name=mRNA_L-elsbetiae_contig1840.5341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6147bp|location=Sequence derived from alignment at L-elsbetiae_contig1840:13411..19557+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1840:13411..19557+ >mRNA_L-elsbetiae_contig1840.5341.1 ID=mRNA_L-elsbetiae_contig1840.5341.1|Name=mRNA_L-elsbetiae_contig1840.5341.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3186bp|location=Sequence derived from alignment at L-elsbetiae_contig1840:13411..19557+ (Laminarionema elsbetiae ELsaHSoW15)back to top |