mRNA_L-elsbetiae_contig184.5337.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig184.5337.1
Unique NamemRNA_L-elsbetiae_contig184.5337.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig184.5337.1 vs. uniprot
Match: D8LLR3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLR3_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 3.860e-85
Identity = 137/172 (79.65%), Postives = 158/172 (91.86%), Query Frame = 2 
Query:   35 MARFSAFAFLAIFTSATSAFMTPLAGAQLGRRAVSANVATTRMSAAPA--TAAPTAADLRKMAEACQEDGCSVETVANLLDQLKSKKKELQMQLVTVDDVLEMMGDTSNLGEKGELEKLIEAVGRVFSTNDGSDYIPYPTGYSGEVNKEKKDAWDYNVNTPLKPVKPVYSSK 544
            MARFSAFAFLAIFTSA +AF+TPLAG Q+GRR+ SANVATTRMSA+PA  TA PTA +L+ MA +CQEDGCSVETV+ LL+QLK+KKKEL+MQLVTVDDVL +MGD+S+L EKGELEKL+EAVGRVFSTNDG+DYIP+PTGYSGEVNK++KDAWDYNVNTPLKPVKPVY  +
Sbjct:    1 MARFSAFAFLAIFTSAATAFVTPLAGVQMGRRSASANVATTRMSASPAPMTAPPTAQELKDMALSCQEDGCSVETVSTLLNQLKTKKKELEMQLVTVDDVLTIMGDSSSLAEKGELEKLVEAVGRVFSTNDGTDYIPFPTGYSGEVNKKQKDAWDYNVNTPLKPVKPVYKKE 172
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BLAST of mRNA_L-elsbetiae_contig184.5337.1 vs. uniprot
Match: A0A7S0LGX7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LGX7_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 1.020e-5
Identity = 33/92 (35.87%), Postives = 54/92 (58.70%), Query Frame = 2 
Query:  212 MAEACQEDGCSVETVANLLDQLKSKKKELQMQLVTVDDVLEMMGDTSNLGE--KGELEKLIEAVGRVFSTNDGSDYIPYPTGYSGEVNKEKK 481
            +A+AC ++GCSV+TV +L+ +LK + K L  ++  V  +L  +   S + E  K E+EKL+ A  R FS  +G ++   P GYS + +   K
Sbjct:   55 VAKACLDEGCSVDTVDDLITELKEESKALTSRMQAVLILLGRLEALSGMPEANKSEIEKLVGAASRSFSVVEGFEFKGEPLGYSLKPSMRNK 146
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig184.5337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLR3_ECTSI3.860e-8579.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0LGX7_9EUKA1.020e-535.87Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig184contigL-elsbetiae_contig184:24721..29284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_004800.1
Exons4
Model size1196
Cds size516
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig184.5337.1prot_L-elsbetiae_contig184.5337.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig184 24755..28638 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815766.807965-UTR-L-elsbetiae_contig184:24720..247541622815766.807965-UTR-L-elsbetiae_contig184:24720..24754Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig184 24721..24754 +
1691683088.7288055-UTR-L-elsbetiae_contig184:24720..247541691683088.7288055-UTR-L-elsbetiae_contig184:24720..24754Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig184 24721..24754 +
1622815766.8719544-UTR-L-elsbetiae_contig184:28638..292841622815766.8719544-UTR-L-elsbetiae_contig184:28638..29284Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig184 28639..29284 +
1691683088.773966-UTR-L-elsbetiae_contig184:28638..292841691683088.773966-UTR-L-elsbetiae_contig184:28638..29284Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig184 28639..29284 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815766.824042-CDS-L-elsbetiae_contig184:24754..249131622815766.824042-CDS-L-elsbetiae_contig184:24754..24913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig184 24755..24913 +
1691683088.7379174-CDS-L-elsbetiae_contig184:24754..249131691683088.7379174-CDS-L-elsbetiae_contig184:24754..24913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig184 24755..24913 +
1622815766.8370001-CDS-L-elsbetiae_contig184:25972..260801622815766.8370001-CDS-L-elsbetiae_contig184:25972..26080Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig184 25973..26080 +
1691683088.747956-CDS-L-elsbetiae_contig184:25972..260801691683088.747956-CDS-L-elsbetiae_contig184:25972..26080Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig184 25973..26080 +
1622815766.8490918-CDS-L-elsbetiae_contig184:27997..281681622815766.8490918-CDS-L-elsbetiae_contig184:27997..28168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig184 27998..28168 +
1691683088.756167-CDS-L-elsbetiae_contig184:27997..281681691683088.756167-CDS-L-elsbetiae_contig184:27997..28168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig184 27998..28168 +
1622815766.8619974-CDS-L-elsbetiae_contig184:28560..286381622815766.8619974-CDS-L-elsbetiae_contig184:28560..28638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig184 28561..28638 +
1691683088.7648983-CDS-L-elsbetiae_contig184:28560..286381691683088.7648983-CDS-L-elsbetiae_contig184:28560..28638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig184 28561..28638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig184.5337.1

>prot_L-elsbetiae_contig184.5337.1 ID=prot_L-elsbetiae_contig184.5337.1|Name=mRNA_L-elsbetiae_contig184.5337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
MARFSAFAFLAIFTSATSAFMTPLAGAQLGRRAVSANVATTRMSAAPATA
APTAADLRKMAEACQEDGCSVETVANLLDQLKSKKKELQMQLVTVDDVLE
MMGDTSNLGEKGELEKLIEAVGRVFSTNDGSDYIPYPTGYSGEVNKEKKD
AWDYNVNTPLKPVKPVYSSKE*
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mRNA from alignment at L-elsbetiae_contig184:24721..29284+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig184.5337.1 ID=mRNA_L-elsbetiae_contig184.5337.1|Name=mRNA_L-elsbetiae_contig184.5337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4564bp|location=Sequence derived from alignment at L-elsbetiae_contig184:24721..29284+ (Laminarionema elsbetiae ELsaHSoW15)
CCGAAACAACGACAACAGCTCATCTCATCGCATCATGGCTCGTTTCTCTG
CCTTCGCGTTCTTGGCCATCTTCACATCCGCCACGTCGGCCTTCATGACA
CCCCTTGCCGGCGCTCAACTCGGCAGGAGGGCTGTCAGCGCAAACGTGGC
CACAACGCGCATGAGTGCCGCACCTGCTACTGCAGCACCCACGGTGAGAC
AAGCAGAGAGATGCTCCAGAGTGAGAGAGAAAGAGCCAGAGAGGAAACAT
AGCCGGGGAGGTGCACGCATCTTTTCCCCCTTTGACTTGGGGAGATTATT
TTTCCCCCAGCACCCAAAACATGAAAATTGCATGGGTGCCAGATGCGCTT
TTTGGGTGCAGAGAGAGAGGGGGCAGCTGTCCACGATGTACGGTCGCTTC
TGTCTCTCGGATCAATCAACATGAGCAACGATTTCGTTGCTTGTCCAAGT
CACTTCCTGGGGTGGAACCTGCCTGGCATGTTGTATGTCAGGGATGTCAC
AATACGAGGTCGACCGGCGCCTACTGAGAGTTCAACCAAAAGGAGTGTGC
TGTTGTATTGATTCCGGGCTGTGTGTGTGTGTGTGTGTGTCTGTGTGATT
TGAACGAAGAACGAGCCCAGAGAACGAACGTGACTGGTAGTGGACCGCAG
GGGGGCTCCCTAACGAAATGACTCTGGGTTTCACGACAAAACGACACACG
GACCGCCCTTGCATGTAGACAGCATAGCATCGCTGCTATGTAGTCTCTCG
GACGCGAGAAGTACAACATACGTCACCAGGGGCGAGTTGATTCTTCTCGA
AAGCTTAAAAGCTTCCATTTTTTTTCAGCGTTGGTACATGGGTACATACG
TTAGTGATATAAATAGTAGTCCAAGCGTGTGCTCCAAGTCCCGAAGGCGC
CTATGTGGCCCTGCCCTCTAGATATCTCGTATATATATATATCTGCCACT
CGGCGGCCAAGTGCAAAGCGCGCTCACGCCGCAGCTCCGTTTGTTTCTTG
GGTCTGAAATATTAATATTCCCGCCACAAGTTCACGTTGTTGAGTATGTA
AACCTGAGTACAGATGTATGGTAGTGTTTACCATCAAGTCACTCCTTGTT
TTGCACACCTTTCTCCCTTGGCTGACTTTTTTGCACCAACACGCACACTC
ACACGCGTACGTACAATCCCCTTTTCGCGATCGTGGTGTCTGCCTTTTAT
GTTGCTTCGCCCCCTCTCCTCCCCTCTTTTCATATTGATCCTTTGTTCCC
AGGCGGCGGACTTGAGGAAAATGGCGGAGGCTTGCCAGGAAGACGGGTGC
TCGGTGGAGACCGTCGCCAACCTGTTGGACCAGCTGAAGTCCAAGAAGAA
GGAGCTCCAGGTATGTCTCGAGTTCGCACGTACATACAGATGCACATTCC
GTCACGGGTCGCAAATTCAACCAAATCAGCAAGCGGATAGCGTCATCAGG
TGCATAACTTCGTTCGTAGTAACTTCTACATGACACACAGAGAGAGATTG
CCGAGGGGTGTGTATATATGTCCAAACATAGTTTACTTCCGCTCGCGACG
CTGAGAAGATGGAGTTGTAGACTCCGGAGCGTACAGCTGAAGCAAAAGCA
CAAGTACATGTAATAAATAAATACCCGAGGGTGGAAACCGCACCCTGCGT
AAGAGTGCTGCTGACCACGACGGGCCTCGTCAAATTGGTGGACATACATG
TAACCGCGTTTACCTTTTACCCGGTGGTGCAATAGCACTTTGATGGCTTG
GAGTCTTCCCTCTGGAGTTGACCGCTTCGCAAGTTAACAAGCGGAAGGAG
CTTCGTTCGGGAAGTATGTACGTTTCGGATTGAACCGTCTTTCGAAATAC
CCCCCCCCCCCCCTCGCGCACCTCATCGTTGTGTTGCCTGTGCACCGCCG
AGCGGAAACTCACCGGATCCAGCACACCACAGGACTTGGCTTCGAAACAT
TCGAGCCAACAGCCAACTTTACAATGGCAGCAGTCCCGTGCATGTGAAAA
CCGTCCTATACATGTATACATATATCGCCGAAAGTAGGAGTACTTACCCA
AGTACATGTACGACACTCCACCGGATAGGCAACGAGTGCCCGACGGGGCC
TGGCGTATCTATCTGGAGCACGCCTGATGGCTGCCCAAGTGGAACGCAAG
TACGCGTGTGCAGAACTTGTCTCTTTTCGTTTCTTCGGTTGGAACCGCTG
TTTCCAACACGTTGGACGAGCTCAAACATACATAGCCAAGATGCAAGCAG
CTCTCCCTGTCTAGCTGTCCCCGGTCACATGTGACCGGGGTATTTCCCGC
ACCCATGGAAGATCAGATCGTGGGCGCACAGAGTAGCCTTATCAAAAACG
TTGTTTTTCGTTTCGATTGGGGGTTTCTGGGGCGACGGTGTACCAAAAGT
ACGGTGGCTGCCGTAACCAGGTACCGAAATTACGGGAGAGCTGAGCTGTT
CGCGTACGCAACCACGTCCTCACTTGTGTTCGTTCCTCCGTTGGGGGCGC
GTTACACGGTTTGTGGCATGTTTGCTCCGCAAAAAAATTACAAATAATCA
CATACAGATGGTCACCCAATTCCACTCATGAGACACCACGCAATCTTCTC
GTGTCTCGGAGCATACGCAGGGGTTGGCCTGTTTTTTACACGCAGGGGAC
TTCGTGTCGCGTGCGAAGAGCCGGAAAATGTCTCCTCGTACTTTTGAGTT
ATTTCGCTAAGGGTTGTTCTTGGCATATGTGTGATGTATGCGCTTTCGCG
CATGTGTGCATCATGGAGGATCAGCAAAGTGCACACGCTCTCACTTTTTT
AATGATGTTCAAACGATCTATTTATTGTAGAAGAAAACGTTCGAAGCGGA
CCTAGGAACGAGGGACCGTAAAATTGAGACAGCGACAAAACGCCTAAAAT
GACACCGGTTGACCCAACGCGTAGACTTGAACACGAGCAGCCGTTTTCTC
CCCACCAGGACAAGGAGCAAAAAGATAAAAAGGTCCCGTACGCTACCTCT
TTCAGACCCCCACCTCCCAATGCAACCTGCAGGGACGCTCAAATAATTCG
GTACTCGACATGTACATGTGTGTGTGTGTGTGTGTGTTGATCCTGCATGC
ACACATACATACCTGAATACTCGCGGTATCCTCGACGACTCAATTCACGG
CATGTTGCTCTATAGTTTTGGCAGTGCTGACTTTGACCAGCCTGTCCGCA
CCTTCCCCGCGCCCAACCCCCCCCCCCCTTGCCTCCCCCCCCCATTCCCC
CCCGGCCTTTTGGTTTGGGCATTCCAGATGCAACTGGTGACCGTGGACGA
CGTCCTTGAGATGATGGGCGACACCTCCAACTTGGGAGAGAAGGGCGAGC
TGGAGAAGCTCATCGAGGCCGTTGGCCGCGTTTTCTCGACCAACGACGGC
TCGGACTACATCCCGTACCCCACTGGCTACTCCGGGGAGGTCAACAAGGT
GTGTACGCGCGCGCACGCACACAGTGCGTACTGTATTCTGACTGAACAGT
GTTCACAGAATGCCTCTCCGATCATCCAGCGGAATGAATATTAAGTTTTA
GTTTTTTCTCTTGACGTAGCCGTCGCCCTCGCTTTTGCCTGCTGTGCCCC
CGTAGCAGCCACGGCAAGTCTGTCCACGTCTGTTCGGGTCACCACGACAC
ACCATCTCTTCTGCCCCTTTACCCCCATTCCCCTCGGTTGGGCGGCCGGC
CCCACGTCCGTCGTGATAAAACCCCGGAGTACACTTTGACAACGCGTATT
ATTTCTCGTTGCTGACTGTCATGTTCGGCGTTGCTGGTGTCGCTTCTCTT
CTTTTCACCTCCCTGGTGACCATGAACTCGAAAACCACAGGAGAAGAAGG
ACGCGTGGGACTACAACGTCAACACCCCGTTGAAGCCCGTGAAGCCCGTT
TACAGCAGCAAGGAGTAGATGAGGCACCACGAACTCGTACATAGCACCCT
TCTCCTTCGAAATATTATGGCTCCTACATAATAGTTGTGTTAGATTGGAT
GCAAGAGAGGGCGCCGGTGCGAACTCCGTGTGCATACCTGTAAGTGGTAC
ACATGTACAAGTCGGCCCAGACTCTCGGAGATCAAACCTGGGGTGTTGGT
AGCTTGGTGAGTTTCCGCTTGGGTGCGTATCCAGCGCAGAGGGAGTTTTG
GAGGATGGTTGCACGCGGATGGCGTTTTTGAGCAGGGTTTGTAGCCGTAG
ACGGCTCGGCTTGCTCGATTGCTGCTCGGTTGCCGCGTCTTGTAGACCGT
AGGTACATAAGAGCGTTTTTTTGGCGGGGGGGAGGCGGGGAGGGGGGTTG
CTTGATTGACAAGGGTGCCTGCGGGGTGGCCGCCGAAGGCACGGTGATAG
ACTTAGAATACCTTTGGAACTCCCCAACTGTTTTTTTTTCTTCGATCCAT
GCAGGTACTAGAAATGTGGTTCATGTGATTTTTCAGATTCAGGCCATCAT
CTTCACAGCAGTATCTGCATACAAATAAGCAGTAGTACATCATAGTAGGT
GTTCGGTCGCCAAATGTGCCCGAAGATAGATGCAGCGATACTCACTTTGA
GTGCCTCCGGGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig184:24721..29284+

>mRNA_L-elsbetiae_contig184.5337.1 ID=mRNA_L-elsbetiae_contig184.5337.1|Name=mRNA_L-elsbetiae_contig184.5337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig184:24721..29284+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCGTTTCTCTGCCTTCGCGTTCTTGGCCATCTTCACATCCGCCAC
GTCGGCCTTCATGACACCCCTTGCCGGCGCTCAACTCGGCAGGAGGGCTG
TCAGCGCAAACGTGGCCACAACGCGCATGAGTGCCGCACCTGCTACTGCA
GCACCCACGATGGCTCGTTTCTCTGCCTTCGCGTTCTTGGCCATCTTCAC
ATCCGCCACGTCGGCCTTCATGACACCCCTTGCCGGCGCTCAACTCGGCA
GGAGGGCTGTCAGCGCAAACGTGGCCACAACGCGCATGAGTGCCGCACCT
GCTACTGCAGCACCCACGGCGGCGGACTTGAGGAAAATGGCGGAGGCTTG
CCAGGAAGACGGGTGCTCGGTGGAGACCGTCGCCAACCTGTTGGACCAGC
TGAAGTCCAAGAAGAAGGAGCTCCAGGCGGCGGACTTGAGGAAAATGGCG
GAGGCTTGCCAGGAAGACGGGTGCTCGGTGGAGACCGTCGCCAACCTGTT
GGACCAGCTGAAGTCCAAGAAGAAGGAGCTCCAGATGCAACTGGTGACCG
TGGACGACGTCCTTGAGATGATGGGCGACACCTCCAACTTGGGAGAGAAG
GGCGAGCTGGAGAAGCTCATCGAGGCCGTTGGCCGCGTTTTCTCGACCAA
CGACGGCTCGGACTACATCCCGTACCCCACTGGCTACTCCGGGGAGGTCA
ACAAGATGCAACTGGTGACCGTGGACGACGTCCTTGAGATGATGGGCGAC
ACCTCCAACTTGGGAGAGAAGGGCGAGCTGGAGAAGCTCATCGAGGCCGT
TGGCCGCGTTTTCTCGACCAACGACGGCTCGGACTACATCCCGTACCCCA
CTGGCTACTCCGGGGAGGTCAACAAGGAGAAGAAGGACGCGTGGGACTAC
AACGTCAACACCCCGTTGAAGCCCGTGAAGCCCGTTTACAGCAGCAAGGA
GTAGGAGAAGAAGGACGCGTGGGACTACAACGTCAACACCCCGTTGAAGC
CCGTGAAGCCCGTTTACAGCAGCAAGGAGTAG
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