mRNA_L-elsbetiae_contig1835.5320.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1835.5320.1
Unique NamemRNA_L-elsbetiae_contig1835.5320.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1835.5320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1835contigL-elsbetiae_contig1835:9203..11844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size291
Cds size291
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1835.5320.1prot_L-elsbetiae_contig1835.5320.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1835 9203..11844 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.8408496-CDS-L-elsbetiae_contig1835:9202..92721622815764.8408496-CDS-L-elsbetiae_contig1835:9202..9272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1835 9203..9272 -
1691683087.6567109-CDS-L-elsbetiae_contig1835:9202..92721691683087.6567109-CDS-L-elsbetiae_contig1835:9202..9272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1835 9203..9272 -
1622815764.853797-CDS-L-elsbetiae_contig1835:10367..104941622815764.853797-CDS-L-elsbetiae_contig1835:10367..10494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1835 10368..10494 -
1691683087.666251-CDS-L-elsbetiae_contig1835:10367..104941691683087.666251-CDS-L-elsbetiae_contig1835:10367..10494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1835 10368..10494 -
1622815764.8657765-CDS-L-elsbetiae_contig1835:11750..118441622815764.8657765-CDS-L-elsbetiae_contig1835:11750..11844Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1835 11751..11844 -
1691683087.6745734-CDS-L-elsbetiae_contig1835:11750..118441691683087.6745734-CDS-L-elsbetiae_contig1835:11750..11844Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1835 11751..11844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1835.5320.1

>prot_L-elsbetiae_contig1835.5320.1 ID=prot_L-elsbetiae_contig1835.5320.1|Name=mRNA_L-elsbetiae_contig1835.5320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
KRRRQVDRHRAHHAVRAGVEWDRENHVCAENGRGPNSSIEPNEEGGGARS
PIKGSPRVRRPNIAHRGGDPWESRHEHAGDRPKNHGDDFVSDQDAP*
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mRNA from alignment at L-elsbetiae_contig1835:9203..11844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1835.5320.1 ID=mRNA_L-elsbetiae_contig1835.5320.1|Name=mRNA_L-elsbetiae_contig1835.5320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2642bp|location=Sequence derived from alignment at L-elsbetiae_contig1835:9203..11844- (Laminarionema elsbetiae ELsaHSoW15)
AAACGGCGCCGCCAGGTTGACCGGCACCGCGCGCACCACGCTGTCAGGGC
TGGGGTCGAATGGGATCGCGAGAACCACGTTTGTGCTGAAAACGGTAAGT
CTACTGCTGCGATCTCATTGGGTTTCTCCGGGATAACGAATGGCAAGAGC
CACCCTGCCCCCCCCCACGTGCGCTTTTTGAGACAGAGGGCTGCTGCTGT
AGGATAGACGATCGGAGGAGAGGGACGAGCAGCGCAGAATTTCGGGATAG
GGAAGATAGAAACTTAAATACCAAGTATATAGCCTACTATTTATTTTAAA
GCATATGTACGTACAAATGTACTTGTGGGATGAAAACAAAAGTGAGCATC
ACCACAAAGGCACATGTACTTGGAAGATAAAAAAATAGAGTGTTGCGCGA
GCAATCACCACAAAAGCATAGTCTATGTACTTGTAAGACGGAAACAAATA
GCAGTGTTGCGCGAGCAATCGCCACAAGATCATAGTCTTGTATGTACTTG
CGAGGCAAAAAAATGCTCCATAAGTATAGCAGTGTTGCACGAGCAATCGC
TACAAAAGCAGAATGACTCCTTCCTCGCTCGGAACGGCGTCGTCGCGGCC
TCTGGTATAATGCATACCCTGACAGAGTCCTGCCATAAAAAACTAGCGAA
AAGGAACGCTTTCAACTACGTGACGACGGTATTTTTACATCTTTTATGTA
CTTGTTGAGCAATTTTTGTTCGACAACGACAGGTCGATTTGTGACATGAA
AGGGATTGGTGGCCTGAAAAGATCGGCGACGCGTGATCGGAACCGACCGT
GAAGTTTTTTTAATTCGGGACGGTTTTCAATGGCGGGGGCGGGTTCACGC
TTCCCAGCGGCACGCAAGAAAAAGCGCCGACCGACACCTTAAGTCGGAAT
GGTTGGATGCAAGGCACTCGGGTATATTTTGGGATACGCACCACCAACAA
ACAAACAACACCATAAGGCAAAAATAACCACACGCAAGCTTGAAAACAAA
TCGGTTTTCGAGGAGTGCAGCAGGCGCCACCACCACCTAAGAAACTGGCA
GTTTGACAGAGCCAGCCCTCACTTAGATGCCAGAGGATAATAACAACCTT
GGATATCTATAAAGACGCCCCACAAAAAATAAATAAGAAATGAGCCTCGA
ACAAAAAAGAAGAGTTTCTTAAGCGGCGGCGCCTGCTGTTACCCGGGAAG
CAAGCGCTACTATGTACGACCGTAGGGATATCTCGAACGCTCGGGCTCGA
ACGTGTTGTCGCCCTTTTTTCTCTCGACCAACACGCCGAAACCCCCCCTC
GTTGGCACGCTGTTCCGACCCCCCCCCCCGACGCCGAACGAAAAAAAAAG
GCCGTGGACCGAACTCGTCAATCGAGCCTAATGAGGAAGGCGGCGGAGCG
CGCTCGCCAATCAAGGGCAGCCCGCGGGTTCGCAGGCCGAATATCGCTCA
TCGCGGGGGGGACCCTTGGGAGAGCAGGTGTGTGTGCGCGCCTGAGACTC
CTCACGATCATGCAACGCTTGTATGTAGTTGAGTTCGCAAAAACAAAAGT
TCTTCTCACGCTGCGACGGTGGCAACTACCGTATACAACACAAGATAACA
CATCCCCCGGACCGATTTTCAAAGCTCAAGTACCACGGCGAGAAGAGTAC
CAGTCCCGAAGAGGGCGACCGGCGTTGGAAAAATCTCATCAAGAAGGGCT
GTCCGAAAACGTGTTGTTTGGTATTATAATCATAAGATGTACTCGTTGCG
GAGTAACCGAGCTTTGAAAGTCGGTGGAGGGGGCCGTGTAATCTTGTGTG
GTCGTACGTATACGGTACATATTAACTCACTCTGCAAAAAAGTGACGTTT
TTCTTAGCGGAAGGCAGAGGGAGACCCCGATGGATGTGATCGTAGTACAT
TTTGTTTCCCTCCCATTAATGAATGGCACATTTGTCGCCTGCCCCACTGG
CCCCCATACTCCACTACGACTAGCTAGACGACACAACCGGGGTCACACAT
ATGTAATGGGCGGTGTTTTGGTAGGTGTTTTGGTAGGTGGGGGGCGAGTT
TCGGTTCCAAGACGAAGAGGTAAAGCCGGCCCGCCGAACAATGCAGTATG
GAACGGGGCGACCTCACCGATAACATCACAGGCAGGCACCGCAGGAGAGG
GTTCGCCCCCCCCCTTCCTCCTGACTGACCCCGGTTGGGTCGTCTAGCCA
GTCGTGAAGGAGGAAGGGGGCCAGTGGGGCAAACGACTAATAAGCCAATA
GCTATAGTGTGAAGATAAAAAAAAAAACATTCGTCCCTGCTGATTGTTGG
TGCACGATTATTTCGGATCTATTTATGTATGTATGTATGTATGTATGTAT
GTATGTATGTATGTATGTAGTATCAGTACACCCTTTCTTAGGGTAAGTTA
GCCTGTGATCCCAGGAATCGATCACGTCGAGTGTTTGATTAGTACGGATG
TACGGAGGTACTGGATGGAGAGACCGGGACGGTTTTTAATGTGAAGAAAA
CAACAACAACAACGACCATGTATCGTGTTGCATATGTTATGCACATATGA
ACACTCGTGCGTGCACGCACAGGCACGAGCACGCAGGCGACCGCCCGAAA
AACCATGGCGATGATTTCGTCTCCGATCAGGATGCTCCTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1835:9203..11844-

>mRNA_L-elsbetiae_contig1835.5320.1 ID=mRNA_L-elsbetiae_contig1835.5320.1|Name=mRNA_L-elsbetiae_contig1835.5320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig1835:9203..11844- (Laminarionema elsbetiae ELsaHSoW15)
AAACGGCGCCGCCAGGTTGACCGGCACCGCGCGCACCACGCTGTCAGGGC
TGGGGTCGAATGGGATCGCGAGAACCACGTTTGTGCTGAAAACGAAACGG
CGCCGCCAGGTTGACCGGCACCGCGCGCACCACGCTGTCAGGGCTGGGGT
CGAATGGGATCGCGAGAACCACGTTTGTGCTGAAAACGGCCGTGGACCGA
ACTCGTCAATCGAGCCTAATGAGGAAGGCGGCGGAGCGCGCTCGCCAATC
AAGGGCAGCCCGCGGGTTCGCAGGCCGAATATCGCTCATCGCGGGGGGGA
CCCTTGGGAGAGCAGGCCGTGGACCGAACTCGTCAATCGAGCCTAATGAG
GAAGGCGGCGGAGCGCGCTCGCCAATCAAGGGCAGCCCGCGGGTTCGCAG
GCCGAATATCGCTCATCGCGGGGGGGACCCTTGGGAGAGCAGGCACGAGC
ACGCAGGCGACCGCCCGAAAAACCATGGCGATGATTTCGTCTCCGATCAG
GATGCTCCTTGAGCACGAGCACGCAGGCGACCGCCCGAAAAACCATGGCG
ATGATTTCGTCTCCGATCAGGATGCTCCTTGA
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