mRNA_L-elsbetiae_contig1835.5319.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1835.5319.1
Unique NamemRNA_L-elsbetiae_contig1835.5319.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1835.5319.1 vs. uniprot
Match: D8LT38_ECTSI (B box-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT38_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 5.910e-12
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 3 
Query:  237 QTRRWAIGLQALVRGWIGRRVAQSRRTHAQRIGEERAMGRVRW 365
            QTRRW IGLQAL RGW+GRR AQ RRT+ Q +GEERA GRVRW
Sbjct:    2 QTRRWVIGLQALTRGWLGRRRAQFRRTYTQHLGEERAAGRVRW 44
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1835.5319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT38_ECTSI5.910e-1276.74B box-type domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1835contigL-elsbetiae_contig1835:6635..9158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size367
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1835.5319.1prot_L-elsbetiae_contig1835.5319.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1835 6635..9156 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.7561269-CDS-L-elsbetiae_contig1835:6634..67701622815764.7561269-CDS-L-elsbetiae_contig1835:6634..6770Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1835 6635..6770 -
1691683087.5896373-CDS-L-elsbetiae_contig1835:6634..67701691683087.5896373-CDS-L-elsbetiae_contig1835:6634..6770Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1835 6635..6770 -
1622815764.7693374-CDS-L-elsbetiae_contig1835:7910..80241622815764.7693374-CDS-L-elsbetiae_contig1835:7910..8024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1835 7911..8024 -
1691683087.6070735-CDS-L-elsbetiae_contig1835:7910..80241691683087.6070735-CDS-L-elsbetiae_contig1835:7910..8024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1835 7911..8024 -
1622815764.7820158-CDS-L-elsbetiae_contig1835:8576..86501622815764.7820158-CDS-L-elsbetiae_contig1835:8576..8650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1835 8577..8650 -
1691683087.6167736-CDS-L-elsbetiae_contig1835:8576..86501691683087.6167736-CDS-L-elsbetiae_contig1835:8576..8650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1835 8577..8650 -
1622815764.7968369-CDS-L-elsbetiae_contig1835:9117..91561622815764.7968369-CDS-L-elsbetiae_contig1835:9117..9156Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1835 9118..9156 -
1691683087.6266253-CDS-L-elsbetiae_contig1835:9117..91561691683087.6266253-CDS-L-elsbetiae_contig1835:9117..9156Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1835 9118..9156 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.809181-UTR-L-elsbetiae_contig1835:9156..91581622815764.809181-UTR-L-elsbetiae_contig1835:9156..9158Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1835 9157..9158 -
1691683087.6424658-UTR-L-elsbetiae_contig1835:9156..91581691683087.6424658-UTR-L-elsbetiae_contig1835:9156..9158Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1835 9157..9158 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1835.5319.1

>prot_L-elsbetiae_contig1835.5319.1 ID=prot_L-elsbetiae_contig1835.5319.1|Name=mRNA_L-elsbetiae_contig1835.5319.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MRVASTRLLKKKREREWQAAEKIQKFIRDRKHNAMIARRRDLFRAVCVQA
MYRATAKGKAGVVVRALGKRYIARRRFRQTRRWAIGLQALVRGWIGRRVA
QSRRTHAQRIGEERAMGRVRW
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mRNA from alignment at L-elsbetiae_contig1835:6635..9158-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1835.5319.1 ID=mRNA_L-elsbetiae_contig1835.5319.1|Name=mRNA_L-elsbetiae_contig1835.5319.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2524bp|location=Sequence derived from alignment at L-elsbetiae_contig1835:6635..9158- (Laminarionema elsbetiae ELsaHSoW15)
TGATGAGAGTAGCTTCCACGAGGCTCCTCAAGAAGAAGAGGGTATGTAAA
TAAAAGTCACATATCTCGCTGTCAGGCTGTAGTCCATGTTTTTTTGTTTC
CCCCAAAGAATGCGTGCGTCTAATCTTCATGCTTCAAACATAGCCTTCAG
GACTCGCCGCAAAAAGTGAATCCACGAAAATTGAAATCTACGAAGTTGAT
GACGTTCAAAGCTCCTGCGAAAAATATGTCGATACCCACATGGTATGATC
GATCGCTGTCGTCGATATGCGTTGCCAATACGTTGCTCGACTGCTGGGAC
AAAACTCCTTACGTCCCTTTCCTTTGGAATATATATATACCTGGGCCCCC
CACACGCACACGCACGCACGCTTACGGTGTCTCCCCATCCCTCCCTCGGT
ATCTTCAACCTGGGGCAGGAAGGAACATGGAGTGTGTTATTCAAATCGCT
CCGATTCCTGTTTCGCGTTTGTCGCGTTTCTGTGTTTTTCGGCTCTCGAC
ATCCCTAGGAAAGGGAGTGGCAAGCGGCTGAAAAGATCCAGAAGTTCATC
CGCGATCGCAAGCACAACGCCATGATTGCAAGGTATCACATTCCGTTTTG
ACGGGTTTAAGCTTTAGGAGCGTATGCCATCGAAAGGTATACGTGTAGAA
CTCTGTTTCCAAGGCGCGGGCGTGTGATATTTATACATATATGTATGCAT
TCTCGGGAAAATATATAGATGTATGCTTTCCCTCCAGCGTTTCCTGGCCT
CGATGTTGCACGTCGTCTGCGTTACTTGTTCTGCCCTGCGAACCCCGATG
TAACCGGTAGCTCTATAAATACCCCACCCTAATCATGTCGCGCACTTCTT
CTTCTTCTCCCCACAGGTATGTACTTCCAGAAGCTTTTTTGTTTTTGTCA
GATTTTTCCCTCTTTGTCGATAAACCGACCCGTCAACTCGAAGACAGGCA
GACTACTCATGAAAAATCAAGGGATGATTATCGCGCATGAGTACATACAT
GGTACATTCCACGAACGGTTGTTTCGTCCTGTAAACCTCCAAAACAACAG
AGCTATGCATGTATGTACTCCTTAAGTTTGCGTGTATGTATCTATACGTA
CAACACTCGTTGTTTCCCTGGCGACATGATGCAGGCGTCGAGATTTGTTC
AGAGCCGTTTGCGTCCAGGCCATGTACCGAGCGACCGCGAAGGGGAAAGC
CGGCGTGGTTGTCCGCGCCCTGGGTAAGCGCTACATAGCCAGACGGAGGT
GAGTTTTTCCCGAAACACCACTTGCTTGGCGACGAAGAAAAGAACAGACG
CACCCTTCCTTCCTTCCTTCCACGTTCACGATCGCAAGCAGAGTCGCATG
CCTGATGACGGCCAAATCTCAGATTTGGAGCAAGGGAGGCGCGGGACGAC
GGCCTGCTTCTTGGGCGTCTGCTGCGCTGATTTGTCCTCCCCCCCACACC
TACCTACCTACCTACCTACCTACCTACCTACCTACCTACCTGTTCGCCCG
TTCGCCCTGGTCATTCTTGTCACCCGTTGCGGTGGTGGAACTGCGTTTTC
ATCGCACGTTCCGCCTGCTCTGACCCAGGGTTGCTTGGCGACGCAAAGAC
AAATAAAATGTCGCTCTTATTTTGTACACAGAAGACAAAATTCCAGAATT
TTTTCAGAAATGGCCACCGTCTCCTCGTCGCCTCTCTTGCGCGCTGCGTC
TCAGGCTTCGAGCTTGAACAGCCAGCGAAAGTGTAGTTTACTACATATTC
ACATAACTACATAGCTTAATTACTATCCATAATTTTGGCGCCTCAAACCC
TTGAATTTTCACGACCAATGTTTACTTAGACGGCGACAGTACAAGATGTA
TTCATTCTTCGAAGCCCTGTGTGTAGATATTCCATGGTATGTCCCAGTCT
GTTGAGAAGCATTCCAAAGCGGCATCGTAGACGGCTCCGAAGTATGCGCG
CGAAAAGGGTGGGAAAAGCGTACAGCCAAGAGCCTTCGATGAGTGCCATG
GGATGGCCCATTACGTATTGTGCATACGATGATGGTGAAAGCCTGGCAGA
AAGTCTCAGCTTCGAGAAACAGCGGTGTCTAGATGAAAACAAAGACTAAG
GGAGCAGCCTAGTAGCGAGACCTACAAACCCTCTGCCATCTATTGTAGAT
ATGTATATATATATATCGTGAAAGCCTGGCGGACGTTCTCATTGTGTCGA
AAACAAACAAAGCCGAATTTGATGCCAACAAGCTGAATGCGGAAGAAGCT
GATGCCGCACACGCACGCACACACACACACACACACACAAACACGCACCG
ATCTCCGAAATGAAAACCAGCCTTCCTTTTAAAATGATGACTAAAACGAC
GTGTTTTAACGAACATAATACTTTGTTTGTGACAACAGGTTCAGGCAGAC
GAGGCGGTGGGCGATAGGGCTTCAGGCTCTTGTTCGAGGCTGGATCGGCC
GTCGGGTAGCTCAGTCTCGAAGGACGCACGCGCAGCGCATCGGCGAGGAG
AGGGCCATGGGGCGCGTTAGGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1835:6635..9158-

>mRNA_L-elsbetiae_contig1835.5319.1 ID=mRNA_L-elsbetiae_contig1835.5319.1|Name=mRNA_L-elsbetiae_contig1835.5319.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig1835:6635..9158- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAGTAGCTTCCACGAGGCTCCTCAAGAAGAAGAGGATGAGAGTAGC
TTCCACGAGGCTCCTCAAGAAGAAGAGGGAAAGGGAGTGGCAAGCGGCTG
AAAAGATCCAGAAGTTCATCCGCGATCGCAAGCACAACGCCATGATTGCA
AGGAAAGGGAGTGGCAAGCGGCTGAAAAGATCCAGAAGTTCATCCGCGAT
CGCAAGCACAACGCCATGATTGCAAGGCGTCGAGATTTGTTCAGAGCCGT
TTGCGTCCAGGCCATGTACCGAGCGACCGCGAAGGGGAAAGCCGGCGTGG
TTGTCCGCGCCCTGGGTAAGCGCTACATAGCCAGACGGAGGCGTCGAGAT
TTGTTCAGAGCCGTTTGCGTCCAGGCCATGTACCGAGCGACCGCGAAGGG
GAAAGCCGGCGTGGTTGTCCGCGCCCTGGGTAAGCGCTACATAGCCAGAC
GGAGGTTCAGGCAGACGAGGCGGTGGGCGATAGGGCTTCAGGCTCTTGTT
CGAGGCTGGATCGGCCGTCGGGTAGCTCAGTCTCGAAGGACGCACGCGCA
GCGCATCGGCGAGGAGAGGGCCATGGGGCGCGTTAGGTGGGTTCAGGCAG
ACGAGGCGGTGGGCGATAGGGCTTCAGGCTCTTGTTCGAGGCTGGATCGG
CCGTCGGGTAGCTCAGTCTCGAAGGACGCACGCGCAGCGCATCGGCGAGG
AGAGGGCCATGGGGCGCGTTAGGTGG
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