mRNA_L-elsbetiae_contig1835.5318.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1835.5318.1
Unique NamemRNA_L-elsbetiae_contig1835.5318.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1835.5318.1 vs. uniprot
Match: A0A6H5KU11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU11_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.940e-44
Identity = 81/93 (87.10%), Postives = 85/93 (91.40%), Query Frame = 2 
Query:    2 FMKYCRFGDRRNTGRMVVAKLTALCKDAGIVDKRFPVQRVEISFSRLKPKDLSHLPYSSFLAALDDLAVQHPEVRRLADADAAAALEEGVAVL 280
            FMKYCRFGDRRNTGRMV AKL ALCKDAGI+DKRFPVQRVEISFSRLKPKDLSHLPYSSFLAALDD+  QHP++RRLADA  AAA EE VAVL
Sbjct:   17 FMKYCRFGDRRNTGRMVAAKLAALCKDAGIIDKRFPVQRVEISFSRLKPKDLSHLPYSSFLAALDDIGTQHPDLRRLADAATAAAQEESVAVL 109
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BLAST of mRNA_L-elsbetiae_contig1835.5318.1 vs. uniprot
Match: D8LT38_ECTSI (B box-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT38_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 6.260e-43
Identity = 81/93 (87.10%), Postives = 86/93 (92.47%), Query Frame = 2 
Query:    2 FMKYCRFGDRRNTGRMVVAKLTALCKDAGIVDKRFPVQRVEISFSRLKPKDLSHLPYSSFLAALDDLAVQHPEVRRLADADAAAALEEGVAVL 280
            FMKYCRFGDRRNTGRMVVAKLTALCKDAGI+DKRFPVQRVEISFSRLKP+DLSHLPY SFLAALDD+  QHP++RRL DA AAAA EE VAVL
Sbjct:   75 FMKYCRFGDRRNTGRMVVAKLTALCKDAGIIDKRFPVQRVEISFSRLKPRDLSHLPYPSFLAALDDIGTQHPDLRRLGDAAAAAAQEESVAVL 167
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BLAST of mRNA_L-elsbetiae_contig1835.5318.1 vs. uniprot
Match: A0A7S0GT93_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GT93_9EUKA)

HSP 1 Score: 61.2 bits (147), Expect = 8.480e-8
Identity = 29/68 (42.65%), Postives = 43/68 (63.24%), Query Frame = 2 
Query:    2 FMKYCRFGDRRNTGRMVVAKLTALCKDAGIVDKRFPVQRVEISFSRLKPKDLSHLPYSSFLAALDDLA 205
            FMK+C+FGD  NTG+M  AK     KD GIVDK+     V++ FS++K K    + +++F  ++ DLA
Sbjct:  142 FMKFCKFGDPTNTGKMTGAKYFKFTKDCGIVDKKLTRTSVDLLFSKIKVKGQRTINFATFKKSMMDLA 209
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1835.5318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KU11_9PHAE1.940e-4487.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT38_ECTSI6.260e-4387.10B box-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A7S0GT93_9EUKA8.480e-842.65Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1835contigL-elsbetiae_contig1835:3048..4174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size619
Cds size618
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1835.5318.1prot_L-elsbetiae_contig1835.5318.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1835 3048..4174 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.6932313-CDS-L-elsbetiae_contig1835:3047..33491622815764.6932313-CDS-L-elsbetiae_contig1835:3047..3349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1835 3048..3349 -
1691683087.5598915-CDS-L-elsbetiae_contig1835:3047..33491691683087.5598915-CDS-L-elsbetiae_contig1835:3047..3349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1835 3048..3349 -
1622815764.7038295-CDS-L-elsbetiae_contig1835:3369..35341622815764.7038295-CDS-L-elsbetiae_contig1835:3369..3534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1835 3370..3534 -
1691683087.5706477-CDS-L-elsbetiae_contig1835:3369..35341691683087.5706477-CDS-L-elsbetiae_contig1835:3369..3534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1835 3370..3534 -
1622815764.7145915-CDS-L-elsbetiae_contig1835:4023..41741622815764.7145915-CDS-L-elsbetiae_contig1835:4023..4174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1835 4024..4174 -
1691683087.5801592-CDS-L-elsbetiae_contig1835:4023..41741691683087.5801592-CDS-L-elsbetiae_contig1835:4023..4174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1835 4024..4174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1835.5318.1

>prot_L-elsbetiae_contig1835.5318.1 ID=prot_L-elsbetiae_contig1835.5318.1|Name=mRNA_L-elsbetiae_contig1835.5318.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=206bp
LHEILPVRGQAKHRADGGGETDGALQRRRHRRQAVPRATSGDFLLEAQAQ
GPQPPPVLELLGRARRPRRPAPGGAKAGRRRRGRGARGRRRRPGSGGRGH
SGNVIARVAVPTHGAAPPAPTQGAAPPAPTHGAAPPAPAPTIVPGTHLPE
EVAPDSSLPKTPDARSRLGAEPKASQAAQGSLTEKTAARRRRGGAKRAER
GLRRW*
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mRNA from alignment at L-elsbetiae_contig1835:3048..4174-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1835.5318.1 ID=mRNA_L-elsbetiae_contig1835.5318.1|Name=mRNA_L-elsbetiae_contig1835.5318.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1127bp|location=Sequence derived from alignment at L-elsbetiae_contig1835:3048..4174- (Laminarionema elsbetiae ELsaHSoW15)
CTTCATGAAATACTGCCGGTTCGGGGACAGGCGAAACACCGGGCGGATGG
TGGTGGCGAAACTGACGGCGCTCTGCAAAGACGCCGGCATCGTCGACAAG
CGGTTCCCCGTGCAACGAGTGGAGATTTCCTTCTCGAGGCTCAAGCCCAA
GGTACTGCGACCCGCGCTCTGCCCCGCAAGTATATACATGCAACTCCCTC
CCACGAACTATCACACTGCTGTTGCTGCTCCGTTCAAGCGATCCAATGCA
CACGGAGAGTTTTCGGACCTCGTCGGATAGCGTTTTTTTTTATCGTGAAG
CCATATCTACATACATACGTAGCTAAGCTATCCCACCCAGCACCGGTTCG
AGGATTTTGTCATCCTTGTTTACAGGCTTTTTTGCGTTGAGTTTTACGAA
CTGATTCAAGCTACTACCGACTCTAGTCTACTATCGTAACGAGCTGCACT
ACCTTTCGTTTTTTAGATCGACGAAGGGCCGTAAATGCTTTTATTACTGC
GCAGCGATATAGATAAATGGTAGCTACGAAAAATAGCGCAAGGCAGGCTA
TGTACCTATAGATGTGTGTGTGGCAAAGACGATGCTTTTTTGTGGTTAAT
TTGATTTCACCACCACCATTGTCTTCGACGACACACGCAGGACCTCAGCC
ACCTCCCGTACTCGAGCTTCTTGGCCGCGCTCGACGACCTCGCCGTCCAG
CACCCGGAGGTGCGAAGGCTGGCCGACGCCGACGCGGCCGCGGCGCTAGA
GGAAGGCGTCGCCGTCCTGGCAGCGGCGGCCGCGGCCACTCCGGCAACGT
CATTGGCAGAAAGACTCCCCCCCAGCACGGGTTGCGGTGCCGACGCACGG
AGCCGCTCCCCCGGCGCCGACGCAGGGAGCCGCTCCCCCGGCGCCGACGC
ACGGAGCCGCTCCCCCGGCGCCGGCACCGACAATCGTTCCGGGGACCCAC
CTACCGGAGGAGGTGGCCCCGGATTCATCTCTCCCGAAAACGCCAGACGC
CCGGTCACGGCTGGGCGCGGAACCCAAAGCAAGCCAGGCGGCGCAAGGGT
CACTAACAGAGAAGACGGCGGCAAGGCGGCGGCGAGGGGGGGCAAAAAGG
GCGGAGCGGGGGTTACGGCGGTGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1835:3048..4174-

>mRNA_L-elsbetiae_contig1835.5318.1 ID=mRNA_L-elsbetiae_contig1835.5318.1|Name=mRNA_L-elsbetiae_contig1835.5318.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig1835:3048..4174- (Laminarionema elsbetiae ELsaHSoW15)
CTTCATGAAATACTGCCGGTTCGGGGACAGGCGAAACACCGGGCGGATGG
TGGTGGCGAAACTGACGGCGCTCTGCAAAGACGCCGGCATCGTCGACAAG
CGGTTCCCCGTGCAACGAGTGGAGATTTCCTTCTCGAGGCTCAAGCCCAA
GCTTCATGAAATACTGCCGGTTCGGGGACAGGCGAAACACCGGGCGGATG
GTGGTGGCGAAACTGACGGCGCTCTGCAAAGACGCCGGCATCGTCGACAA
GCGGTTCCCCGTGCAACGAGTGGAGATTTCCTTCTCGAGGCTCAAGCCCA
AGGACCTCAGCCACCTCCCGTACTCGAGCTTCTTGGCCGCGCTCGACGAC
CTCGCCGTCCAGCACCCGGAGGTGCGAAGGCTGGCCGACGCCGACGCGGC
CGCGGCGCTAGAGGAAGGCGTCGCCGTCCTGGCAGCGGCGGCCGCGGCCA
CTCCGGCAACGTCATTGGACCTCAGCCACCTCCCGTACTCGAGCTTCTTG
GCCGCGCTCGACGACCTCGCCGTCCAGCACCCGGAGGTGCGAAGGCTGGC
CGACGCCGACGCGGCCGCGGCGCTAGAGGAAGGCGTCGCCGTCCTGGCAG
CGGCGGCCGCGGCCACTCCGGCAACGTCATTGCACGGGTTGCGGTGCCGA
CGCACGGAGCCGCTCCCCCGGCGCCGACGCAGGGAGCCGCTCCCCCGGCG
CCGACGCACGGAGCCGCTCCCCCGGCGCCGGCACCGACAATCGTTCCGGG
GACCCACCTACCGGAGGAGGTGGCCCCGGATTCATCTCTCCCGAAAACGC
CAGACGCCCGGTCACGGCTGGGCGCGGAACCCAAAGCAAGCCAGGCGGCG
CAAGGGTCACTAACAGAGAAGACGGCGGCAAGGCGGCGGCGAGGGGGGGC
AAAAAGGGCGGAGCGGGGGTTACGGCGGTGGTAGCACGGGTTGCGGTGCC
GACGCACGGAGCCGCTCCCCCGGCGCCGACGCAGGGAGCCGCTCCCCCGG
CGCCGACGCACGGAGCCGCTCCCCCGGCGCCGGCACCGACAATCGTTCCG
GGGACCCACCTACCGGAGGAGGTGGCCCCGGATTCATCTCTCCCGAAAAC
GCCAGACGCCCGGTCACGGCTGGGCGCGGAACCCAAAGCAAGCCAGGCGG
CGCAAGGGTCACTAACAGAGAAGACGGCGGCAAGGCGGCGGCGAGGGGGG
GCAAAAAGGGCGGAGCGGGGGTTACGGCGGTGGTAG
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