mRNA_L-elsbetiae_contig1834.5315.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1834.5315.1
Unique NamemRNA_L-elsbetiae_contig1834.5315.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1834.5315.1 vs. uniprot
Match: A0A6H5JX29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX29_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.090e-28
Identity = 61/101 (60.40%), Postives = 80/101 (79.21%), Query Frame = 2 
Query:   20 MNSSLATYLVLITAALSVTYLSFMMYSAFGLGALTAAAPFIGSISIVFTIAHCLDQAQDAEDE-RAKTASLEGAGXXXXASKPKAGATTTPAVPRRRRVAD 319
            M+SS ATYLVL+T ALSVTYLSF+MYSA+GLGA+ AAAPF+G++++VF +AHCLD+A +AED  +A   S +G G     +KP A   TTPA+P+RRR+AD
Sbjct:    1 MSSSAATYLVLVTVALSVTYLSFLMYSAYGLGAVKAAAPFVGTVALVFAVAHCLDRAHEAEDTAKAAPKSTQGGGTT---AKPTA---TTPAIPKRRRIAD 95
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1834.5315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JX29_9PHAE1.090e-2860.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1834contigL-elsbetiae_contig1834:2637..3439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size358
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.4147284-CDS-L-elsbetiae_contig1834:2636..28001622815764.4147284-CDS-L-elsbetiae_contig1834:2636..2800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1834 2637..2800 +
1691683087.340142-CDS-L-elsbetiae_contig1834:2636..28001691683087.340142-CDS-L-elsbetiae_contig1834:2636..2800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1834 2637..2800 +
1622815764.4255319-CDS-L-elsbetiae_contig1834:3246..34391622815764.4255319-CDS-L-elsbetiae_contig1834:3246..3439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1834 3247..3439 +
1691683087.3504553-CDS-L-elsbetiae_contig1834:3246..34391691683087.3504553-CDS-L-elsbetiae_contig1834:3246..3439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1834 3247..3439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1834.5315.1prot_L-elsbetiae_contig1834.5315.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1834 2637..3439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1834.5315.1

>prot_L-elsbetiae_contig1834.5315.1 ID=prot_L-elsbetiae_contig1834.5315.1|Name=mRNA_L-elsbetiae_contig1834.5315.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
SDTAEYDEFLSGYLPRAHNGSAVRDVLELHDVFCVWPGGFDSRSSVHRKH
INCLHYRTLPRPSTRRRGRKSENGVLGRGRRGRGCVKAEGRSDNNTGGAE
AASSGRLIRFSFRRGPVGG
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mRNA from alignment at L-elsbetiae_contig1834:2637..3439+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1834.5315.1 ID=mRNA_L-elsbetiae_contig1834.5315.1|Name=mRNA_L-elsbetiae_contig1834.5315.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=803bp|location=Sequence derived from alignment at L-elsbetiae_contig1834:2637..3439+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGACACCGCAGAGTACGATGAATTCCTCTCTGGCTACCTACCTCGTGC
TCATAACGGCAGCGCTGTCCGTGACGTACTTGAGCTTCATGATGTATTCT
GCGTTTGGCCTGGGGGCTTTGACAGCCGCAGCTCCGTTCATCGGAAGCAT
ATCAATTGTCTTCAGTGAGTGCGAGCCAGTTGCAGCTAGCTGTACCTACC
TACAACAACGGCAATTGGTTCACTTTAGAGAAGGGGGTCCGGCTTGGTTC
AGGCCAGGCCATCTAGCTTGACCGACTGACCGGCAAGAAGAGACTGCTGC
TGTATCAAATAGATCACGTGGTAAAATCACGCTTGTTCTATTGTAGGACC
CCGGGGAAGCAGCAGTTATTTAGAGATGACGGCTACCTGCAGACTAGCCT
GCTGCTGCCTGGTGCCATTCTTGACACCATCTACGCGTATCTCGCGTTTT
ACGCGGTTCAGCCCATGCGCATTACTACTGTTGTTGCAGCAATAACGACG
GCAGCCTCGAAATCGATACGACAGCGTCATCACTCGTCTTCCAATTTTCA
ATCGACCGTTTCGCCCCGCACCCCCTGCACGTTTCATCGTCCCCACGAAT
CAATGCATAGCTATCGCACATTGCCTCGACCAAGCACAAGACGCAGAGGA
CGAAAGAGCGAAAACGGCGTCCTTGGAAGGGGCAGGAGGGGCAGGGGGTG
CGTCAAAGCCGAAGGCAGGAGCGACAACAACACCGGCGGTGCCGAGGCGG
CGTCGAGTGGCAGATTGATTCGTTTCTCTTTTCGTAGGGGACCTGTGGGC
GGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1834:2637..3439+

>mRNA_L-elsbetiae_contig1834.5315.1 ID=mRNA_L-elsbetiae_contig1834.5315.1|Name=mRNA_L-elsbetiae_contig1834.5315.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig1834:2637..3439+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGACACCGCAGAGTACGATGAATTCCTCTCTGGCTACCTACCTCGTGC
TCATAACGGCAGCGCTGTCCGTGACGTACTTGAGCTTCATGATGTATTCT
GCGTTTGGCCTGGGGGCTTTGACAGCCGCAGCTCCGTTCATCGGAAGCAT
ATCAATTGTCTTCATCCGACACCGCAGAGTACGATGAATTCCTCTCTGGC
TACCTACCTCGTGCTCATAACGGCAGCGCTGTCCGTGACGTACTTGAGCT
TCATGATGTATTCTGCGTTTGGCCTGGGGGCTTTGACAGCCGCAGCTCCG
TTCATCGGAAGCATATCAATTGTCTTCACTATCGCACATTGCCTCGACCA
AGCACAAGACGCAGAGGACGAAAGAGCGAAAACGGCGTCCTTGGAAGGGG
CAGGAGGGGCAGGGGGTGCGTCAAAGCCGAAGGCAGGAGCGACAACAACA
CCGGCGGTGCCGAGGCGGCGTCGAGTGGCAGATTGATTCGTTTCTCTTTT
CGTAGGGGACCTGTGGGCGGGCTATCGCACATTGCCTCGACCAAGCACAA
GACGCAGAGGACGAAAGAGCGAAAACGGCGTCCTTGGAAGGGGCAGGAGG
GGCAGGGGGTGCGTCAAAGCCGAAGGCAGGAGCGACAACAACACCGGCGG
TGCCGAGGCGGCGTCGAGTGGCAGATTGATTCGTTTCTCTTTTCGTAGGG
GACCTGTGGGCGGG
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