|
|
Homology
BLAST of mRNA_L-elsbetiae_contig1833.5311.1 vs. uniprot
Match: D7FP09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP09_ECTSI) HSP 1 Score: 195 bits (495), Expect = 3.240e-56 Identity = 91/107 (85.05%), Postives = 99/107 (92.52%), Query Frame = 1
Query: 127 MGGAPSKVYHGSNLDVIPEGQATERATVWQKEGYHDDYTKSPILPDDRDDITEYVELLAMLHSPAGQNFLGKFSMEIGTQHVLFAWSDIQEYRAIPTVDYRFTKAKQ 447
MGGAPS+V+ S L +PE +ATE ATVW+KEGYHDD+TKSPILPDDR+DITEYVELLAMLHSP GQNFLG+FSMEIGTQHVLFAWSDIQEYRAIPTVDYRFTKAKQ
Sbjct: 1 MGGAPSRVHQSSTLGEVPESRATEHATVWRKEGYHDDFTKSPILPDDREDITEYVELLAMLHSPVGQNFLGRFSMEIGTQHVLFAWSDIQEYRAIPTVDYRFTKAKQ 107
BLAST of mRNA_L-elsbetiae_contig1833.5311.1 vs. uniprot
Match: A0A835ZAC1_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC1_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 1.440e-7 Identity = 27/64 (42.19%), Postives = 39/64 (60.94%), Query Frame = 1
Query: 238 YTKSPILPDDRDDITEYVELLAMLHSPAGQNFLGKFSMEIGTQHVLFAWSDIQEYRAIPTVDYR 429
+ K LP D E++EL +L P GQ ++G F+ + T FAW++IQEYR+IPT DY+
Sbjct: 5 FEKDGTLPAGVDSDPEHMELRTILEDPVGQKYIGAFAKKTLTHESFFAWTEIQEYRSIPTADYQ 68
BLAST of mRNA_L-elsbetiae_contig1833.5311.1 vs. uniprot
Match: D8LEF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF7_ECTSI) HSP 1 Score: 57.0 bits (136), Expect = 1.230e-6 Identity = 24/51 (47.06%), Postives = 37/51 (72.55%), Query Frame = 1
Query: 289 VELLAMLHSPAGQNFLGKFSMEIGTQHVLFAWSDIQEYRAIPTVDYRFTKA 441
+E+ A+L P GQ ++G+F+ ++ TQ +AW DIQE+R+IPT DYR K+
Sbjct: 19 LEMRAILEDPIGQKYIGQFAKKVMTQESFYAWVDIQEFRSIPTGDYRRGKS 69
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 195.3 |
| Seed ortholog evalue | 2.1e-47 |
| Seed eggNOG ortholog | 2880.D7FP09 |
| KEGG ko | ko:K00910,ko:K04688 |
| KEGG Pathway | ko01521,ko01522,ko04012,ko04062,ko04066,ko04140,ko04144,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04340,ko04350,ko04371,ko04666,ko04714,ko04724,ko04740,ko04745,ko04910,ko04931,ko05032,ko05165,ko05200,ko05205,ko05210,ko05212,ko05221,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04012,map04062,map04066,map04140,map04144,map04150,map04151,map04152,map04211,map04212,map04213,map04340,map04350,map04371,map04666,map04714,map04724,map04740,map04745,map04910,map04931,map05032,map05165,map05200,map05205,map05210,map05212,map05221,map05224,map05225,map05226,map05231 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | protein serine/threonine kinase activity |
| EggNOG OGs | KOG0598@1,KOG0598@2759 |
| EC | 2.7.11.1,2.7.11.15 |
| COG Functional cat. | H |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko01001,ko04147 |
| Ec32 ortholog description | Protein kinase domain |
| Ec32 ortholog | Ec-05_001850.1 |
| Exons | 3 |
| Model size | 447 |
| Cds size | 447 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815764.2609522-CDS-L-elsbetiae_contig1833:1380..1508 | 1622815764.2609522-CDS-L-elsbetiae_contig1833:1380..1508 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1833 1381..1508 - |
| 1691683087.233345-CDS-L-elsbetiae_contig1833:1380..1508 | 1691683087.233345-CDS-L-elsbetiae_contig1833:1380..1508 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1833 1381..1508 - |
| 1622815764.2712607-CDS-L-elsbetiae_contig1833:2152..2310 | 1622815764.2712607-CDS-L-elsbetiae_contig1833:2152..2310 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1833 2153..2310 - |
| 1691683087.2436225-CDS-L-elsbetiae_contig1833:2152..2310 | 1691683087.2436225-CDS-L-elsbetiae_contig1833:2152..2310 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1833 2153..2310 - |
| 1622815764.2820034-CDS-L-elsbetiae_contig1833:4190..4351 | 1622815764.2820034-CDS-L-elsbetiae_contig1833:4190..4351 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1833 4191..4351 - |
| 1691683087.25491-CDS-L-elsbetiae_contig1833:4190..4351 | 1691683087.25491-CDS-L-elsbetiae_contig1833:4190..4351 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1833 4191..4351 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1833.5311.1 >prot_L-elsbetiae_contig1833.5311.1 ID=prot_L-elsbetiae_contig1833.5311.1|Name=mRNA_L-elsbetiae_contig1833.5311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
PVGYGKRLHPFARRGTFAEHFLVESRGRVASHTPAVTARGRDMGGAPSKV
YHGSNLDVIPEGQATERATVWQKEGYHDDYTKSPILPDDRDDITEYVELL
AMLHSPAGQNFLGKFSMEIGTQHVLFAWSDIQEYRAIPTVDYRFTKAKQ back to topmRNA from alignment at L-elsbetiae_contig1833:1381..4351- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1833.5311.1 ID=mRNA_L-elsbetiae_contig1833.5311.1|Name=mRNA_L-elsbetiae_contig1833.5311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2971bp|location=Sequence derived from alignment at L-elsbetiae_contig1833:1381..4351- (Laminarionema elsbetiae ELsaHSoW15)
CCTGTTGGTTACGGAAAAAGACTGCATCCGTTCGCGCGACGAGGGACGTT
TGCAGAACACTTCTTGGTCGAAAGCCGAGGCCGTGTGGCTTCTCATACAC
CAGCTGTGACAGCGAGAGGGAGAGATATGGGAGGTGCACCAAGCAAGGTT
TACCACGGAAGGTGAGAGCAGGCGTTGTTAGTAAATCAGCTTTTGTAGGG
TCCATCCGGTGCGGGCCCCGGATTTAAGTCGCCTTTGAACGCAACCACAA
GAGGCATGTGACTTGAGGGTGTAGAAGAAGCAACAGCTTGGGAGTGGGAC
AGCTTTGTTGCCCAATCGAGAGACCAACCCGCTCCCTCTTTTGGTCCGCT
CGCCATTGTTGTAACAAAACCGAGATGGATCTCAACGCGAGGGGCTTACG
TTTCCCGTGGGTACAATAAAGCACTTGTGACGGATTTTCGTACACAGCAG
GAAGGCGGGTTCGTTTGCCCCCGTGGTTTTCCCAGAAATACAATGCGGAA
CCTGAGGCTCATCGCACGATCTCTCAACACATATCTACACGTGCAAGTGC
CAACAGAGTGGCAGTGACGAAATACGGTTAACGATGAAAGATGTTGTCAT
CACTTCCGGCGGATAATACTTTATTTGAGCGTCCGGTACACAGTTGCCGA
AGAACCACTCGGGCAGAACGACCGGCTACCACCGGGAAGGCTCGTGTCTT
GAAACCTTGGTCGGAACGGCACAGCTGACCTATGTAGGGGCGCTATCTGC
GCGTTGGCTGGCTTGACACCCGTCTTTGTTTCCGGCGCTGGCTAAGGATA
AAAAGATACTTCTATATATCTATCTATCTAATGCAAAACAGCTCGCTTCT
GCCTTTCCGTTCGTGTTGCCCATCGATCGGGGATCACTCCCGAGGGAAGC
GGAGGCGGTCCAGGTTTTCACACAAAAAGAAACATGTTATCGGACCCCTC
CCTCTCAAGACGGGCTTTCTTAGCAGTGCGCCTCCTTCGACAAGCGAAGT
AACTCAATATATTTACCATGCCACATTTATTTTCACACAAGGGTGTATGT
ACTGTAGGCCAGTGGGAGCCTTGCAGCAAGATGACAGCACCAAATCCGAG
ATTTCCATGCTGTTAAAGATGAGCAGTACGGTTGGTAGATACCAGAGAAC
GAGCGGATGAACGCCCATACGAACAGGTGCAGCCGTTGCTGCTGACGGTT
TTGCTAGGGCCACAAAGCTCGGGATTGTTTTCTGGGACCAAACTATAGAA
AGGGGGCCATCTTCCGATGCTGCACAGACAGAGCAGAGCGGCGGGGCACC
TGGTGGTGTCGCGGAACCTTTGCCACTTTCACCAAGGCTAATCACTCACC
CCCGCCCATTCGCCTACCGACTCCACCAAGAACGAGTTGGTCATTCTACG
GCCCATTTAAACACTCGCACGCCTGCTTGGTTTGTTTGTTTGTTTGTTTG
TATTTTCGGCTTGTTTACTGTCCGATGTCCTTTTTTTCCCTCTTGCTGTG
ATCATATGTGCGGTGCAATGGGTGGGGAGGACTAGATTGGTGGGCCTGAC
CCGCAAGAACCGGGCGTGGAATGCCCCGCCGTTGTTGGGGTACCAGGATA
GAACCAGGGGGGTGTATTCCCCCCGCGGTTGGGGAAATCGGCTTTTTTCC
ACTCTTGTCACCACCTCCCATAGCGTGCAGAGGGGCGGAGGACTCCAGAC
CATTTTCGTCTAATCGTTTGTTTTTTGTGCTTTGTGGACCCTTTGGGTCC
ATTTTATTTCATTTTTTTTCAGCATATTTAGTATTATACCCCGTCTAGAA
GGTAAGTTATCCTGTGGCCACGGGAATCGACTGCGTCAGTGTTGGGATCA
GTACGGACTCAGGTTAGTACGGACTCATGGAGGTAAATCGGAACGGTTAC
TAATGTGAAGACAACAACAACAACAACAACAGCAACAGCAACAACAGCAA
CAACAACAACAACAACAACAACGACAAAAACAACAACAACAACAACGACA
ACAACCGTATGCCCGCCTCTTCTGCTGCGTGGCCTACCCAGTAACCTGGA
TGTAATACCCGAAGGCCAGGCGACGGAGCGCGCGACAGTGTGGCAGAAGG
AGGGCTACCACGACGACTACACGAAGAGCCCTATTTTGCCGGACGACCGA
GACGATATCACGGAGTACGTCGAGCTTCTGGCGATGCTGCACAGCCCTGG
TGAGTGTTGTCTCTGTCTAAGAGAGACGGAACTCTGGTTGCTCTCACCTC
GATTTCTTGCGGGTCAGATGAGGCACCCGCTTCATTTGTGTACAATATAC
ATGCCGTGGATATGCGCTCGAACCTCATTGCTGCTGTTTTTTTGGCATTG
CCAGAGAGGATGCATGCCGAAAACAGTTTTAGGAAAGTTGGCTTGGCGAT
GTGCGCCTCAAATGTTTCCAAACGACACGACCCTCGTACGACCAAGGCAT
ATATCTCTGCAGAGGGGTTAACTAACAGTCATCCCATCAGAGCCATATTT
CGCAGAGCCTACAGGCATATAGACACGCTCTCTTTGGGTGCCACCGGTGT
TGCTGTTGCGTGCTATGTAGGGATTCGCCTTGCACTTGGCGTTTCATATT
TCACCGGCTCACATTTCTTCCGTGAAATCCAAGGGAAGAAGAGAGAACAA
GACCGCACACCTTGCATCGGCAAAGCGCGGAGAGCATCCAAGTTTTTCCC
CGCCAGATGCCGAAAGCATCGCCCCTCTCAAGTGCTGCCAGTTCCTCCCC
ACAGACGAAAGCGTAGCCCAAACTTCCTCCATCGAAGCGTCCCGAACACG
AATATACCTGTCCCGCTTAAATCTTGAAACCCTGTATTTTCAGCCGGCCA
GAATTTTCTCGGAAAGTTCTCCATGGAGATCGGGACGCAGCACGTTCTCT
TCGCATGGAGCGACATCCAGGAGTACCGGGCTATCCCGACGGTGGACTAC
CGTTTCACCAAGGCCAAGCAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1833:1381..4351- >mRNA_L-elsbetiae_contig1833.5311.1 ID=mRNA_L-elsbetiae_contig1833.5311.1|Name=mRNA_L-elsbetiae_contig1833.5311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig1833:1381..4351- (Laminarionema elsbetiae ELsaHSoW15)
CCTGTTGGTTACGGAAAAAGACTGCATCCGTTCGCGCGACGAGGGACGTT
TGCAGAACACTTCTTGGTCGAAAGCCGAGGCCGTGTGGCTTCTCATACAC
CAGCTGTGACAGCGAGAGGGAGAGATATGGGAGGTGCACCAAGCAAGGTT
TACCACGGAAGCCTGTTGGTTACGGAAAAAGACTGCATCCGTTCGCGCGA
CGAGGGACGTTTGCAGAACACTTCTTGGTCGAAAGCCGAGGCCGTGTGGC
TTCTCATACACCAGCTGTGACAGCGAGAGGGAGAGATATGGGAGGTGCAC
CAAGCAAGGTTTACCACGGAAGTAACCTGGATGTAATACCCGAAGGCCAG
GCGACGGAGCGCGCGACAGTGTGGCAGAAGGAGGGCTACCACGACGACTA
CACGAAGAGCCCTATTTTGCCGGACGACCGAGACGATATCACGGAGTACG
TCGAGCTTCTGGCGATGCTGCACAGCCCTGTAACCTGGATGTAATACCCG
AAGGCCAGGCGACGGAGCGCGCGACAGTGTGGCAGAAGGAGGGCTACCAC
GACGACTACACGAAGAGCCCTATTTTGCCGGACGACCGAGACGATATCAC
GGAGTACGTCGAGCTTCTGGCGATGCTGCACAGCCCTGCCGGCCAGAATT
TTCTCGGAAAGTTCTCCATGGAGATCGGGACGCAGCACGTTCTCTTCGCA
TGGAGCGACATCCAGGAGTACCGGGCTATCCCGACGGTGGACTACCGTTT
CACCAAGGCCAAGCAGCCGGCCAGAATTTTCTCGGAAAGTTCTCCATGGA
GATCGGGACGCAGCACGTTCTCTTCGCATGGAGCGACATCCAGGAGTACC
GGGCTATCCCGACGGTGGACTACCGTTTCACCAAGGCCAAGCAG back to top
|