mRNA_L-elsbetiae_contig18319.5308.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18319.5308.1
Unique NamemRNA_L-elsbetiae_contig18319.5308.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig18319.5308.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 2.510e-37
Identity = 67/76 (88.16%), Postives = 72/76 (94.74%), Query Frame = 1 
Query:    4 ASKPTYNVMVFDAIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 231
            ++KPTYN MVFDAIKTLKER+GSSIQAIKKSITAT P+LNFTPHQMRSALKKGVESGKFIK+K SYKLS EAKKPA
Sbjct:    3 STKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPA 78
[Close]
BLAST of mRNA_L-elsbetiae_contig18319.5308.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 6.410e-37
Identity = 68/75 (90.67%), Postives = 72/75 (96.00%), Query Frame = 1 
Query:    7 SKPTYNVMVFDAIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 231
            +KPTYNVMVFDAIKTLKER+GSSIQAIKKSITAT P+LNFTPHQMR ALKKGVESGKFIK+K SYKLSPEAKKPA
Sbjct:   97 AKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKPA 171
[Close]
BLAST of mRNA_L-elsbetiae_contig18319.5308.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 2.530e-34
Identity = 63/75 (84.00%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:    7 SKPTYNVMVFDAIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 231
            +KPTY+VMVFDAIK LKER GSS+ A+KK I AT PSLNFTPHQMRSALKKG ESGKFIKVK SYKLSPEAKKPA
Sbjct:    5 AKPTYSVMVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 79
[Close]
BLAST of mRNA_L-elsbetiae_contig18319.5308.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 4.260e-32
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:   28 MVFDAIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 231
            MVFDAIKTLKER+GSSIQAIKKSITAT P+LNFTPHQMRSALKKGVESGKF+K+K SYKLS EAKKPA
Sbjct:    1 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPA 68
[Close]
BLAST of mRNA_L-elsbetiae_contig18319.5308.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 8.590e-31
Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:   28 MVFDAIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKP 228
            MVFDAIK+LKER+GSSIQAIKKSITAT P+LNFTPHQMRSALKKGVE+GKFIKVK SYKLS EAKKP
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKP 67
[Close]
BLAST of mRNA_L-elsbetiae_contig18319.5308.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 3.490e-30
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:   28 MVFDAIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 231
            MVFDAIK LKER GSS+ A+KK I AT PSLNFTPHQMRSALKKG ESGKFIKVK SYKLSPEAKKPA
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 68
[Close]
BLAST of mRNA_L-elsbetiae_contig18319.5308.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 4.950e-25
Identity = 50/62 (80.65%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:   28 MVFDAIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSP 213
            MVFDAIKTLKER+GSSIQA+KKSITAT P+L+FTPHQMRSALKKGVE+GKFIKV+ +  L+P
Sbjct:    1 MVFDAIKTLKERNGSSIQAMKKSITATYPALHFTPHQMRSALKKGVETGKFIKVRHALPLAP 62
[Close]
BLAST of mRNA_L-elsbetiae_contig18319.5308.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 9.860e-24
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:   13 PTYNVMVFDAIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKP 228
            PTY+ M   AI  LKER+GSS+ AIKK I AT P+LNF PHQ+R ALKKG E+G FIKVK SYK+SPEAKKP
Sbjct:    2 PTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKP 73
[Close]
BLAST of mRNA_L-elsbetiae_contig18319.5308.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 2.510e-22
Identity = 51/73 (69.86%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:   13 PTYNVMVFDAIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 231
            PTY+ M  +A+K LKER+GSS+ AIKK ITA+ PSL FT H MRSALKKGVESGKFIKVK SYKLS   ++PA
Sbjct:    2 PTYDEMTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEPA 74
[Close]
BLAST of mRNA_L-elsbetiae_contig18319.5308.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.920e-20
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:   13 PTYNVMVFDAIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLS 210
            PTY+ M  +A+K LKER+GSS+ AIKK ITA+ PSL FT H +RSALKKGVESGKFIKVK SYKLS
Sbjct:    2 PTYDEMTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKFIKVKNSYKLS 67
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18319.5308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ80_ECTSI2.510e-3788.16Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KCU1_9PHAE6.410e-3790.67H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4I5_ECTSI2.530e-3484.00H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5KST0_9PHAE4.260e-3289.71H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
D8LQ75_ECTSI8.590e-3189.55H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JHR9_9PHAE3.490e-3085.29H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K9S6_9PHAE4.950e-2580.65H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMF1_ECTSI9.860e-2469.44H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJB8_ECTSI2.510e-2269.86H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIM8_9PHAE1.920e-2072.73H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18319contigL-elsbetiae_contig18319:1991..3126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue4.9e-29
Seed eggNOG ortholog2880.D7FWJ4
Preferred nameH1
KEGG koko:K11275
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons3
Model size297
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18319.5308.1prot_L-elsbetiae_contig18319.5308.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18319 1991..3126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.9577575-CDS-L-elsbetiae_contig18319:1990..20171622815763.9577575-CDS-L-elsbetiae_contig18319:1990..2017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18319 1991..2017 +
1691683087.0559638-CDS-L-elsbetiae_contig18319:1990..20171691683087.0559638-CDS-L-elsbetiae_contig18319:1990..2017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18319 1991..2017 +
1622815763.9712985-CDS-L-elsbetiae_contig18319:2399..25581622815763.9712985-CDS-L-elsbetiae_contig18319:2399..2558Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18319 2400..2558 +
1691683087.0728445-CDS-L-elsbetiae_contig18319:2399..25581691683087.0728445-CDS-L-elsbetiae_contig18319:2399..2558Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18319 2400..2558 +
1622815763.9918602-CDS-L-elsbetiae_contig18319:3015..31261622815763.9918602-CDS-L-elsbetiae_contig18319:3015..3126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18319 3016..3126 +
1691683087.0811436-CDS-L-elsbetiae_contig18319:3015..31261691683087.0811436-CDS-L-elsbetiae_contig18319:3015..3126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18319 3016..3126 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18319.5308.1

>prot_L-elsbetiae_contig18319.5308.1 ID=prot_L-elsbetiae_contig18319.5308.1|Name=mRNA_L-elsbetiae_contig18319.5308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
MASKPTYNVMVFDAIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSA
LKKGVESGKFIKVKGSYKLSPEAKKPAPKPKKKVVKKVVKKVVKKKVKK
back to top

mRNA from alignment at L-elsbetiae_contig18319:1991..3126+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18319.5308.1 ID=mRNA_L-elsbetiae_contig18319.5308.1|Name=mRNA_L-elsbetiae_contig18319.5308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1136bp|location=Sequence derived from alignment at L-elsbetiae_contig18319:1991..3126+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTCCAAGCCTACCTACAACGTGGTGAGTACGGCTGACGAGGCCCT
CTTTGTGCTGTACATGCACTTATTGTCTAGATGTACGGAGGTTTGAATTT
GAAAGGACTTCGCCCACCCACTACAACGGTTGGTGCTTTCGTGCATGGTG
CGCGTCCGCCAACCCCCGAGTCAGCGGGCATAGCCACGGGAACGGTTAAC
TCCGTAGAAGTATTTAAAGCACGAGTGTGGTATGTGTGTGCTACGGAGAT
ATGTGCTTTGTATCTAGCTATGTACAACAAGTGTAAGAAGGCCGTTTGGT
TAGATGTAGTGTAGTTTGCGGTTGCCTCGCTCTGAATCCTTGTCGAAACA
GCTCCGGTCTTGCTCGTCGCTCGCTCCTTGGTGCTCCTCCCGCTGTTCAC
ATCTGGCAGATGGTATTTGATGCCATCAAGACCCTCAAGGAAAGGAGCGG
GTCGTCCATCCAGGCCATCAAGAAGAGCATCACCGCCACCAACCCGTCCC
TCAACTTCACGCCGCACCAGATGCGCAGCGCCCTCAAGAAGGGGGTCGAG
TCCGGTAAATTCATCAAGGTGATACAATCTGCTGTACGTCCTCTGCCAAA
CCTGAAGCCATGTGACATGCGGTGTTTGATCCACACACATCAGTAGAGCA
GTGTTGTGTCGGAACCCCGAGGCCGCCTTTGGAAAAACTGTCAAACTGCT
GCAGGTTTTCTGTTTATTGTTCTCTCCAAATGGCCAACGACCCTTGTGCG
TCTTAGAGTAAAGGCTAAATAAACATCGTCTCCACGATCACGTCCAGCTT
GTGTAAATGTATGTCACATAGTAGTTCAGCACGCATGCATATCCCATCAT
GATGCGCAAGAGGTTGGGCCCGTTCTTGTTATGTTGATGTACCGCAGATA
ACGTATTCACGAAGTATGTAGATACATACTTTGCTGGCTTGCACGCATAA
ATTATTTCGGGACCTGAAAGCAGCAGTGTCCGACCAACTCTTGCCCCCCT
ATTGACGACGTTTGTTAAACACCAGGTGAAAGGCTCCTACAAGCTTAGCC
CCGAGGCCAAGAAGCCCGCTCCCAAGCCCAAGAAGAAGGTTGTGAAGAAG
GTCGTCAAGAAGGTGGTGAAGAAGAAGGTCAAGAAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig18319:1991..3126+

>mRNA_L-elsbetiae_contig18319.5308.1 ID=mRNA_L-elsbetiae_contig18319.5308.1|Name=mRNA_L-elsbetiae_contig18319.5308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig18319:1991..3126+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTCCAAGCCTACCTACAACGTGATGGCGTCCAAGCCTACCTACAA
CGTGATGGTATTTGATGCCATCAAGACCCTCAAGGAAAGGAGCGGGTCGT
CCATCCAGGCCATCAAGAAGAGCATCACCGCCACCAACCCGTCCCTCAAC
TTCACGCCGCACCAGATGCGCAGCGCCCTCAAGAAGGGGGTCGAGTCCGG
TAAATTCATCAAGATGGTATTTGATGCCATCAAGACCCTCAAGGAAAGGA
GCGGGTCGTCCATCCAGGCCATCAAGAAGAGCATCACCGCCACCAACCCG
TCCCTCAACTTCACGCCGCACCAGATGCGCAGCGCCCTCAAGAAGGGGGT
CGAGTCCGGTAAATTCATCAAGGTGAAAGGCTCCTACAAGCTTAGCCCCG
AGGCCAAGAAGCCCGCTCCCAAGCCCAAGAAGAAGGTTGTGAAGAAGGTC
GTCAAGAAGGTGGTGAAGAAGAAGGTCAAGAAGGTGAAAGGCTCCTACAA
GCTTAGCCCCGAGGCCAAGAAGCCCGCTCCCAAGCCCAAGAAGAAGGTTG
TGAAGAAGGTCGTCAAGAAGGTGGTGAAGAAGAAGGTCAAGAAG
back to top