mRNA_L-elsbetiae_contig1830.5304.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1830.5304.1
Unique NamemRNA_L-elsbetiae_contig1830.5304.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1830.5304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1830contigL-elsbetiae_contig1830:6043..8796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons4
Model size876
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1830.5304.1prot_L-elsbetiae_contig1830.5304.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1830 6311..8692 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.6142943-UTR-L-elsbetiae_contig1830:6042..63101622815763.6142943-UTR-L-elsbetiae_contig1830:6042..6310Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1830 6043..6310 +
1691683086.843746-UTR-L-elsbetiae_contig1830:6042..63101691683086.843746-UTR-L-elsbetiae_contig1830:6042..6310Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1830 6043..6310 +
1622815763.6724706-UTR-L-elsbetiae_contig1830:8692..87961622815763.6724706-UTR-L-elsbetiae_contig1830:8692..8796Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1830 8693..8796 +
1691683086.8997073-UTR-L-elsbetiae_contig1830:8692..87961691683086.8997073-UTR-L-elsbetiae_contig1830:8692..8796Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1830 8693..8796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.624154-CDS-L-elsbetiae_contig1830:6310..63281622815763.624154-CDS-L-elsbetiae_contig1830:6310..6328Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1830 6311..6328 +
1691683086.854504-CDS-L-elsbetiae_contig1830:6310..63281691683086.854504-CDS-L-elsbetiae_contig1830:6310..6328Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1830 6311..6328 +
1622815763.633988-CDS-L-elsbetiae_contig1830:6963..71981622815763.633988-CDS-L-elsbetiae_contig1830:6963..7198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1830 6964..7198 +
1691683086.8644848-CDS-L-elsbetiae_contig1830:6963..71981691683086.8644848-CDS-L-elsbetiae_contig1830:6963..7198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1830 6964..7198 +
1622815763.645745-CDS-L-elsbetiae_contig1830:7553..77301622815763.645745-CDS-L-elsbetiae_contig1830:7553..7730Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1830 7554..7730 +
1691683086.8781447-CDS-L-elsbetiae_contig1830:7553..77301691683086.8781447-CDS-L-elsbetiae_contig1830:7553..7730Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1830 7554..7730 +
1622815763.65558-CDS-L-elsbetiae_contig1830:8618..86921622815763.65558-CDS-L-elsbetiae_contig1830:8618..8692Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1830 8619..8692 +
1691683086.8899539-CDS-L-elsbetiae_contig1830:8618..86921691683086.8899539-CDS-L-elsbetiae_contig1830:8618..8692Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1830 8619..8692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1830.5304.1

>prot_L-elsbetiae_contig1830.5304.1 ID=prot_L-elsbetiae_contig1830.5304.1|Name=mRNA_L-elsbetiae_contig1830.5304.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=168bp
MLRGLEPYVARWRPAALRPALAAFSVNMAADIVRGVLRRALRQRSPPAWT
GCLDGPRLKWSLALFSRPLDLQRVQHSNVLSRTRGFFFFFGVAAATSLSP
FLRRRAAGAMDPSSSASTPCFYFALASSSICAELVPCPGAEETGGWGANA
PFLCRAERSRRGRSARG*
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mRNA from alignment at L-elsbetiae_contig1830:6043..8796+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1830.5304.1 ID=mRNA_L-elsbetiae_contig1830.5304.1|Name=mRNA_L-elsbetiae_contig1830.5304.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2754bp|location=Sequence derived from alignment at L-elsbetiae_contig1830:6043..8796+ (Laminarionema elsbetiae ELsaHSoW15)
CGCAGTGCTAGAATAATGCTTGACGCAGGCAACCAGACGACCGCGGTGAC
TGATGAAGCTAGCTAGCCTGCGTATCGAGACCGCGCCCGTCATCGCGCGC
GTTACGACCAGCTGGCATGCCGTGCTCGGGCTTGAGAACCGAGGGCGACG
GCGAAGGCTAGGGCGGCCCGTGGCTCCTCGTTGTCCTGCTCTGGTCGGCG
CAGCGTAATTTGGGCGGGGTAGTTCTAGGGGGAAAGCTCAGGGATCGACT
GGACGGTTCTTTGTCGGCATGCTGCGTGGTTTAGAGGTAAGCAAGAGGTG
TTGGTTGTTACAGATGAATTACGCTGGAGTGACACAGTCTAGGAGATCTT
ATTTTGTCCGTCATTTTGTATTTTTCTCTCCATTTTCTTGGTGGTGCGTC
GCACGCTTCCTCCGTTTTGGAAGAGACGACTTCCTCCCGCGGTCGAAGAA
ACGCAAGTGTTATATAGTGGTATCGCACAGCAGTGCGGAGGTGAAATAAC
ATGCCGGCAACATATGACGAATTCTTGGAGTACTCGGACATAGTACCGAG
TACCAACACAACCGATCATGTTGCGAAAACATGGTCTGGCGAAAGAACAG
AACGTAAGGGGGTGCTGCCGGCTCTCGAAGATCGGACTGGTTCAAGAGGG
GAGGGATCAAACAATGCGACAACACTTTTGCGTATTCTAGCTGGGATCAA
TATTGATACGTAAGCGTGATACATCAGCCGTGTTGTGAACCATAACCGAC
CGCCGTGTTATTAACCATCACCGAAACTTGAGGCTCTCCGAACGCTACAT
CTAGAAAAAGGTGAACAGAGAAAAACGAACTGCACACGTGTACATGCATA
CGTATGAGAGGCATGATTGAGCATCACCGGTCCTCTGCCCCCCGCCCCGC
GCCCTGCCTACTCTGCCGCAGCCGTACGTGGCGAGGTGGAGGCCAGCGGC
GCTTCGGCCGGCCCTTGCTGCCTTTTCGGTAAACATGGCGGCCGACATCG
TGCGGGGTGTTTTGCGACGGGCTCTGCGGCAGCGGTCACCACCGGCATGG
ACGGGGTGCCTCGATGGCCCCAGGCTGAAGTGGAGCTTGGCCCTCTTCAG
TCGGCCGCTCGACTTACAACGGGTGCAGCACAGCAACGTCTTATCCCGGA
CGCGTGGTGAGTAAGCAAAACCAGAACGATTTGCACGAAGCAGAGTGCGT
TCCCGATGTCTGTCTCTCATGTGCGATCAAGAGCCCGAGTTTCAAGCGCA
GGACCGGCAGGCCACCTACGCAGCTAAAAAAATAGCGAAGTATGAAGGCG
CCACACATGCTCACTTCGAAAAGGTCTGTCTGCTCATTTTTTTCTTGCCT
CTATCAGCCCCCTTCGCTCCAACTCTGTGAGCTAAACGCGCCTGATGATC
GTCGTCGCTGCAACGGATCAGCAACTGTGCAAGTTGAATGGGTGATACTT
CATACCTCAAATCGGTCGTGTGCTCTGCCTATTGTAACGCTGCTGCTGTT
GCTGGTGTCAGGGTTCTTCTTTTTCTTCGGCGTCGCGGCAGCTACGTCAC
TCTCCCCGTTTCTGCGTCGCCGTGCTGCTGGTGCCATGGACCCTTCTTCT
TCCGCTTCGACACCCTGCTTCTACTTCGCCCTTGCCTCTTCTTCTATCTG
CGCCGAGCTCGTACCTTGCCCAGGAGCAGAGGAAACAGGTACGATACATT
GTCTGGGAGAAACGCTGGTCTTGGCGCTTTCGGATACTGCTATACCCGAC
TGCTGTACCCCAAGTTTTCCTCGCGTCTACAATATTGCTTTCGTAAGGCA
CCTCGTGCTAAGACAGATTCAAGCTTCGCGGTTCACACGTGTGTTGTAAT
TAACGCTGTCATAAGACCTCCCCGCTCATCCATTTTCTCGATATTCAGCA
CTGCACACGTCGCACCAGTGGCGCAGGTGTGCACTTAAATTATTTAGCTG
ACTATGGAGAAAGTGGTCCACCCCAGGGAAACTATTCCCTGTTCGCCGTC
CTGGAAAAAGTGGTCCACAGCAATAACCGGCCCCCTCTCCCTCCCGTGTA
ACAAATAATCTAACTCTGGGTACCGCTATTCATGAAAAGCACCTGTGCAG
ATGCCGATCATGACGTGCAACACGAAGATGAGCGCTCTTATTTGAATGAA
TGTATACAAATGTCAGCAGCCTACGTCCAGTCTGCGAAAAATCTTATTTT
GCAACAGGACGCGTATCGTGCTACTGGTGCAGGCAACCACGATAATGTTA
CACCTTTCAGCCAAACTGCCATCACCAGCAAGCTTCGCAATACGGCCCTC
CTTCATGCATTTCACCCACACCCCCCCCCCCCCCCCCCCCCCCCCCCCCA
AACTAAACCCCCCCCCCCGTGTTTTCCTCTCGAATTGCCACCCCCNNNNN
NNNNNAATACGGCCCTCCTTCATGCATTTCCCCCACCCCCCCCCCCCGGC
CCTTCACCATCGTACATACGTAACTGCCTCCTGATGTTTTGCTCCGAATA
TTGACCCTCCCATTCCAGTCGAACCAACCCCCCGCCCCCCTCCGCGCGCT
ACCCCTCCGAACCACCACGGCTGCAGGAGGTTGGGGCGCAAACGCCCCAT
TTCTTTGCAGGGCGGAACGTTCTCGGCGCGGCAGGAGTGCTAGAGGATAG
AAGTGTCAGCGGAGAAGTATCATCATCAACAGAAGGCTTTCCCAACACCC
CAGATCCCGCGATTCACATTCACTCGATGTTTATCCTTCCTTCCTATGTT
CGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1830:6043..8796+

>mRNA_L-elsbetiae_contig1830.5304.1 ID=mRNA_L-elsbetiae_contig1830.5304.1|Name=mRNA_L-elsbetiae_contig1830.5304.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1008bp|location=Sequence derived from alignment at L-elsbetiae_contig1830:6043..8796+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCGTGGTTTAGAGATGCTGCGTGGTTTAGAGCCGTACGTGGCGAG
GTGGAGGCCAGCGGCGCTTCGGCCGGCCCTTGCTGCCTTTTCGGTAAACA
TGGCGGCCGACATCGTGCGGGGTGTTTTGCGACGGGCTCTGCGGCAGCGG
TCACCACCGGCATGGACGGGGTGCCTCGATGGCCCCAGGCTGAAGTGGAG
CTTGGCCCTCTTCAGTCGGCCGCTCGACTTACAACGGGTGCAGCACAGCA
ACGTCTTATCCCGGACGCGTGCCGTACGTGGCGAGGTGGAGGCCAGCGGC
GCTTCGGCCGGCCCTTGCTGCCTTTTCGGTAAACATGGCGGCCGACATCG
TGCGGGGTGTTTTGCGACGGGCTCTGCGGCAGCGGTCACCACCGGCATGG
ACGGGGTGCCTCGATGGCCCCAGGCTGAAGTGGAGCTTGGCCCTCTTCAG
TCGGCCGCTCGACTTACAACGGGTGCAGCACAGCAACGTCTTATCCCGGA
CGCGTGGGTTCTTCTTTTTCTTCGGCGTCGCGGCAGCTACGTCACTCTCC
CCGTTTCTGCGTCGCCGTGCTGCTGGTGCCATGGACCCTTCTTCTTCCGC
TTCGACACCCTGCTTCTACTTCGCCCTTGCCTCTTCTTCTATCTGCGCCG
AGCTCGTACCTTGCCCAGGAGCAGAGGAAACAGGGTTCTTCTTTTTCTTC
GGCGTCGCGGCAGCTACGTCACTCTCCCCGTTTCTGCGTCGCCGTGCTGC
TGGTGCCATGGACCCTTCTTCTTCCGCTTCGACACCCTGCTTCTACTTCG
CCCTTGCCTCTTCTTCTATCTGCGCCGAGCTCGTACCTTGCCCAGGAGCA
GAGGAAACAGGAGGTTGGGGCGCAAACGCCCCATTTCTTTGCAGGGCGGA
ACGTTCTCGGCGCGGCAGGAGTGCTAGAGGATAGGAGGTTGGGGCGCAAA
CGCCCCATTTCTTTGCAGGGCGGAACGTTCTCGGCGCGGCAGGAGTGCTA
GAGGATAG
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