mRNA_L-elsbetiae_contig183.5301.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig183.5301.1
Unique NamemRNA_L-elsbetiae_contig183.5301.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig183.5301.1 vs. uniprot
Match: A0A6H5KVJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVJ1_9PHAE)

HSP 1 Score: 313 bits (802), Expect = 1.320e-103
Identity = 175/206 (84.95%), Postives = 181/206 (87.86%), Query Frame = 1 
Query:    1 MRVTRAKQYRRHLRFFRIVYGITAPYKVILDGNFIHGCISSNVDIEQRLASVLQGAAMHLFVPTSARAELKALGPEFQKAYNFAIGRCRGLPLAPNRTSAAGADEEGXXXXXXXXXXXXX-DPAKEILATIGAANEGKYLVASQDENLRVRLRRVPGCPLVFVSRTVLLMEQPSGKSKAEFEKAERKKAVGTTEEEDRVLGILKKR 615
            MRVTRAKQYRRHLRFFRIVYGI+APYKVILDGNFIHGCISS VDIE+RL SVLQGA MHLFVP SAR ELKALGPEFQKAYNFAIG CRGLP   N   A GA    XXXXXXXXX     DPAKEI+A IGA NEGKYLVASQDENLR+RLRRVPGCPLVFVSRTVL+MEQPSGKSKAEFEKAERKKAVGTTEEEDRVL +LKKR
Sbjct:    1 MRVTRAKQYRRHLRFFRIVYGISAPYKVILDGNFIHGCISSKVDIEKRLTSVLQGAKMHLFVPRSAREELKALGPEFQKAYNFAIGHCRGLPPPRNENQAGGAXXXXXXXXXXXXXGEKGPDPAKEIIAAIGADNEGKYLVASQDENLRMRLRRVPGCPLVFVSRTVLVMEQPSGKSKAEFEKAERKKAVGTTEEEDRVLAVLKKR 206
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BLAST of mRNA_L-elsbetiae_contig183.5301.1 vs. uniprot
Match: A0A836CFL8_9STRA (Fcf1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFL8_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.700e-52
Identity = 103/207 (49.76%), Postives = 135/207 (65.22%), Query Frame = 1 
Query:    1 MRVTRAKQYRRHLRFFRIVYGITAPYKVILDGNFIHGCISSNVDIEQRLASVLQGAAMHLFVPTSARAELKALGPEFQKAYNFAIGRCRGLPL-APNRTSAAGADEEGXXXXXXXXXXXXXDPAKEILATIGAANEGKYLVASQDENLRVRLRRVPGCPLVFVSRTVLLMEQPSGKSKAEFEKAERKKAVGTTEEEDRVLGILKKRE 618
            MR+TRAKQYRR LRFFRIVYG+ APYKV+LDGNFIH C++  V++ +R+ +VLQG    L VP +A  EL+ALG +FQ A  FA   C+ +   AP + S                      PA++I A I + N  +Y+VASQDE LR +LR V GCPL+++S+TVLLMEQ SGK+KA FE  ER+K  G TEEE  ++  L++ E
Sbjct:    1 MRITRAKQYRRRLRFFRIVYGVQAPYKVLLDGNFIHACLAHKVEMGERIQAVLQGEKYKLLVPKTAIDELRALGEKFQAAAAFATRSCQTITEHAPGKGS----------------------PAEQIEALISSDNPHRYIVASQDEELRAKLRNVAGCPLLYLSKTVLLMEQASGKTKAAFEALERRK-TGVTEEETAIVEQLRQEE 184
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BLAST of mRNA_L-elsbetiae_contig183.5301.1 vs. uniprot
Match: D8LKG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG1_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 5.250e-51
Identity = 103/128 (80.47%), Postives = 106/128 (82.81%), Query Frame = 1 
Query:  172 MHLFVPTSARAELKALGPEFQKAYNFAIGRCRGLPLAPNRTSAAGADEEGXXXXXXXXXXXXX-DPAKEILATIGAANEGKYLVASQDENLRVRLRRVPGCPLVFVSRTVLLMEQPSGKSKAEFEKAE 552
            MHLFVP SAR ELKALGPEFQKAYNFAIG CRGLP   N   A       XXXXXXXXXX    DPAKEI+A IGA NEGKYLVASQDENLRVRLRR+PGCPLVFVSRTVL+MEQPSGKSKAEFEKAE
Sbjct:    1 MHLFVPRSAREELKALGPEFQKAYNFAIGHCRGLPPPRNENQAXXXXXXXXXXXXXXXXXEKGPDPAKEIVAAIGADNEGKYLVASQDENLRVRLRRIPGCPLVFVSRTVLVMEQPSGKSKAEFEKAE 128
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BLAST of mRNA_L-elsbetiae_contig183.5301.1 vs. uniprot
Match: A0A7S2B5Q5_9STRA (Hypothetical protein n=3 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B5Q5_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.610e-31
Identity = 77/203 (37.93%), Postives = 108/203 (53.20%), Query Frame = 1 
Query:    1 MRVTRAKQYRRHLRFFRIVYGITAPYKVILDGNFIHGCISSNVDIEQRLASVLQGAAMHLFVPTSARAELKALGPEFQKAYNFAIGRCRGLPLAPNRTSAAGADEEGXXXXXXXXXXXXXDPAKEILATIGAANEGKYLVASQDENLRVRLRRVPGCPLVFVSRTVLLMEQPSGKSKAEFEKAERKKAVGTTEEEDRVLGILK 609
            MR+ R K+ R+ L FFR+ +GI+ PY+V+LDGNFIH C S  +DI  RL   L G    L+VP+   +EL+ LG   + A  FA+  C  +      + +AG                       IL  IG  N   YLVASQDE+LR  LR +PG PL+F+ RTVL++E     SK    + E KK V    +E + +G+++
Sbjct:    1 MRLLRGKKARKTLAFFRLNFGISPPYRVLLDGNFIHECTSYKIDILARLGKQLGGEKFMLYVPSCVISELEMLGTNMKPALTFALENCEVVACDSAESCSAG-----------------------ILGLIGEKNAEGYLVASQDEDLRCELRAIPGVPLMFIKRTVLILESTGHASKTATVQMETKK-VAVVGDESKAMGLVR 179
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BLAST of mRNA_L-elsbetiae_contig183.5301.1 vs. uniprot
Match: W7T2Y0_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2Y0_9STRA)

HSP 1 Score: 126 bits (317), Expect = 4.360e-31
Identity = 77/197 (39.09%), Postives = 105/197 (53.30%), Query Frame = 1 
Query:   28 RRHLRFFRIVYGITAPYKVILDGNFIHGCISSNVDIEQRLASVLQGAAMHLFVPTSARAELKALGPEFQKAYNFAIGRCRGLPLAPNRTSAAGADEEGXXXXXXXXXXXXXDPAKEILATIGAANEGKYLVASQDENLRVRLRRVPGCPLVFVSRTVLLMEQPSGKSKAEFEKAERKKAVGTTEEEDRVLGILKKRE 618
            R+ LRF+RIVYGIT PYK+++DGNFIH  +   +DI  RL  +L    +  + P +   EL A+GP+F+ A+ +    C    L PN T     D+ G                  I   +G  N  KY+VA+QD+ L+ RLR VP   L+FVSR V LME PS  S+    K E +K    TEEE  +L  L+ +E
Sbjct:    2 RKWLRFYRIVYGITPPYKILVDGNFIHMALKVKIDIRDRLKKMLLVENLACYAPQAVLDELAAMGPDFRAAHEWVQSCC---DLVPNPTIKTNHDDSGKNYV---------SAGAAICTMVGEKNIDKYMVATQDQELKARLRHVPSVALLFVSRAVFLMEAPSTSSRLFSAKQEGEKFRLLTEEERCLLASLRHKE 186
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BLAST of mRNA_L-elsbetiae_contig183.5301.1 vs. uniprot
Match: A0A7S2B6T0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B6T0_9STRA)

HSP 1 Score: 105 bits (262), Expect = 5.630e-24
Identity = 65/182 (35.71%), Postives = 91/182 (50.00%), Query Frame = 1 
Query:   64 ITAPYKVILDGNFIHGCISSNVDIEQRLASVLQGAAMHLFVPTSARAELKALGPEFQKAYNFAIGRCRGLPLAPNRTSAAGADEEGXXXXXXXXXXXXXDPAKEILATIGAANEGKYLVASQDENLRVRLRRVPGCPLVFVSRTVLLMEQPSGKSKAEFEKAERKKAVGTTEEEDRVLGILK 609
            +   Y+V+LDGNFIH C S  +DI  RL   L G    L+VP+   +EL+ LG   + A  FA+  C  +      + +AG                       IL  IG  N   YLVASQDE+LR  LR +PG PL+F+ RTVL++E     SK    + E KK V    +E + +G+++
Sbjct:    9 VACSYRVLLDGNFIHECTSYKIDILARLGKQLGGEKFMLYVPSCVISELEMLGTNMKPALTFALENCEVVACDSAESCSAG-----------------------ILGLIGEKNAEGYLVASQDEDLRCELRAIPGVPLMFIKRTVLILESTGHASKTATVQMETKK-VAVVGDESKAMGLVR 166
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BLAST of mRNA_L-elsbetiae_contig183.5301.1 vs. uniprot
Match: D8LKG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG2_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.190e-23
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    1 MRVTRAKQYRRHLRFFRIVYGITAPYKVILDGNFIHGCISSNVDIEQRLASVLQ 162
            MRVTRAKQYR+HLRFFRIVYGI+APYKVILDGNFIHGCISS VDIE+RL SVLQ
Sbjct:    1 MRVTRAKQYRKHLRFFRIVYGISAPYKVILDGNFIHGCISSKVDIEKRLTSVLQ 54
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BLAST of mRNA_L-elsbetiae_contig183.5301.1 vs. uniprot
Match: A0A7S1C1L6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C1L6_9STRA)

HSP 1 Score: 105 bits (262), Expect = 6.820e-23
Identity = 71/190 (37.37%), Postives = 104/190 (54.74%), Query Frame = 1 
Query:    1 MRVTRAKQYRRHLRFFRIVYGITAPYKVILDGNFIHGCISSNVDIEQRLASVLQGA--AMHLFVPTSARAELKALGPEF----QKAYNFAIGRCRGLPLAPNRTSAAGADEEGXXXXXXXXXXXXXDPAKEILATIGAANEGKYLVASQDENLRVRLRRVPGCPLVFVSRTVLLMEQPSGKSKAEFEKAE 552
            MR+ R KQ+R+ LRF+R++Y ++ P+KV+LDGNFIH  + ++ +I++ L S+LQ     + LFV      EL++LG EF     +A  F + RC             G D                  A+ I + IG  N+  + VASQD  LR RLR V G P++ +S++VL++EQPS  SK   EK E
Sbjct:   37 MRILRQKQHRKILRFYRMMYNVSPPFKVLLDGNFIHIGLRTSAEIKRLLPSLLQERPDVVRLFVTPCILNELRSLGAEFGDTLAEARTFRVARC-----------GHGDDP--------------VSAAECIASLIGTKNKEHFFVASQDGLLRSRLRAVAGTPIILLSQSVLVLEQPSDASKGLVEKNE 201
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BLAST of mRNA_L-elsbetiae_contig183.5301.1 vs. uniprot
Match: W4H7D3_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H7D3_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.070e-21
Identity = 71/173 (41.04%), Postives = 93/173 (53.76%), Query Frame = 1 
Query:    1 MRVTRAKQYRRHLRFFRIVYGITAPYKVILDGNFIHGCISSNVDIEQRLASVLQGAAMHLFVPTSARAELKALGPEFQKAYNFAIGRCRGLPLAPNRTSAAGADEEGXXXXXXXXXXXXXDPAKEILATIGAANEGKYLVASQDENLRVRLRRVPGCPLVFVSRTVLLMEQPS 519
            MR  RAK  R+ LR F+ + GI  PYKV+LDGNFI  CI  +VDI  RL S LQ      FV  +   ELK L  +              +  A    SA    E G  XXXX       D    ++A +GA N+ K++VA+Q+  LR RLRRVPG PL++++R+VL+ E  S
Sbjct:    1 MRYLRAKHIRKSLRQFQFLCGIKPPYKVLLDGNFIAMCIKMHVDIAVRLPSFLQTDKCTYFVTRAVLDELKLLSDDAD------------MRAAWEAASAFEVVEGGSDXXXXT------DVTSSMVAAVGARNDKKFIVATQETELRGRLRRVPGVPLIYLNRSVLVFEDMS 155
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BLAST of mRNA_L-elsbetiae_contig183.5301.1 vs. uniprot
Match: F0WJZ3_9STRA (rRNAprocessing protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJZ3_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.720e-21
Identity = 69/204 (33.82%), Postives = 103/204 (50.49%), Query Frame = 1 
Query:    1 MRVTRAKQYRRHLRFFRIVYGITAPYKVILDGNFIHGCISSNVDIEQRLASVLQGAAMH--LFVPTSARAELKALGPEFQKAYNFAIGRCRGLPLAPNRTSAAGADEEGXXXXXXXXXXXXXDPAKEILATIGAANEGKYLVASQDENLRVRLRRVPGCPLVFVSRTVLLMEQPSGKSKAEFEKAERKKAVGTTEEEDRVLGIL 606
            MR  RAK  R+ LR F+ + GI  PYKV+LD NFI  C  + V++++R+A  LQ        F+P  +  ELK +G   +            + +     S A  D                D  KEILA IG  N GKY+VA+Q+  LR +LR++PG PL++++R+VL+ E  S  + A   + E+ K     E E + L ++
Sbjct:    1 MRYLRAKAIRKALRQFQFLCGIKPPYKVLLDINFIAMCHQAKVELKERVAKFLQVKLYQCEFFIPEKSIQELKLIGDSMKPVLES-------IKMFSVIESKASEDS--------------VDMTKEILAIIGECNAGKYIVATQEVELRKQLRQIPGVPLIYLNRSVLVFEDISRATVAIVRQKEQSKLAKLDEAEKQTLEVV 183
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig183.5301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVJ1_9PHAE1.320e-10384.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CFL8_9STRA1.700e-5249.76Fcf1-domain-containing protein n=1 Tax=Tribonema m... [more]
D8LKG1_ECTSI5.250e-5180.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2B5Q5_9STRA1.610e-3137.93Hypothetical protein n=3 Tax=Dictyocha speculum Ta... [more]
W7T2Y0_9STRA4.360e-3139.09Uncharacterized protein n=4 Tax=Monodopsidaceae Ta... [more]
A0A7S2B6T0_9STRA5.630e-2435.71Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D8LKG2_ECTSI1.190e-2390.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1C1L6_9STRA6.820e-2337.37Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
W4H7D3_9STRA1.070e-2141.04Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
F0WJZ3_9STRA2.720e-2133.82rRNAprocessing protein putative n=1 Tax=Albugo lai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig183contigL-elsbetiae_contig183:28127..32973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue3e-18
Seed eggNOG ortholog112098.XP_008611894.1
Preferred nameUTP23
KEGG koko:K14773
Hectar predicted targeting categorymitochondrion
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0019843,GO:0022613,GO:0030490,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0070013,GO:0070181,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsCOG1412@1,KOG3164@2759
Ec32 ortholog descriptionPIN domain-like
Ec32 orthologEc-16_002850.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons7
Model size868
Cds size867
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.2116797-CDS-L-elsbetiae_contig183:28126..282071622815763.2116797-CDS-L-elsbetiae_contig183:28126..28207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig183 28127..28207 +
1691683086.5814667-CDS-L-elsbetiae_contig183:28126..282071691683086.5814667-CDS-L-elsbetiae_contig183:28126..28207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig183 28127..28207 +
1622815763.2235234-CDS-L-elsbetiae_contig183:29061..291421622815763.2235234-CDS-L-elsbetiae_contig183:29061..29142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig183 29062..29142 +
1691683086.5916507-CDS-L-elsbetiae_contig183:29061..291421691683086.5916507-CDS-L-elsbetiae_contig183:29061..29142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig183 29062..29142 +
1622815763.2394555-CDS-L-elsbetiae_contig183:29888..299721622815763.2394555-CDS-L-elsbetiae_contig183:29888..29972Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig183 29889..29972 +
1691683086.6021023-CDS-L-elsbetiae_contig183:29888..299721691683086.6021023-CDS-L-elsbetiae_contig183:29888..29972Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig183 29889..29972 +
1622815763.2533972-CDS-L-elsbetiae_contig183:30467..306501622815763.2533972-CDS-L-elsbetiae_contig183:30467..30650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig183 30468..30650 +
1691683086.6108959-CDS-L-elsbetiae_contig183:30467..306501691683086.6108959-CDS-L-elsbetiae_contig183:30467..30650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig183 30468..30650 +
1622815763.265582-CDS-L-elsbetiae_contig183:31560..316831622815763.265582-CDS-L-elsbetiae_contig183:31560..31683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig183 31561..31683 +
1691683086.6197834-CDS-L-elsbetiae_contig183:31560..316831691683086.6197834-CDS-L-elsbetiae_contig183:31560..31683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig183 31561..31683 +
1622815763.279804-CDS-L-elsbetiae_contig183:32282..323711622815763.279804-CDS-L-elsbetiae_contig183:32282..32371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig183 32283..32371 +
1691683086.6286788-CDS-L-elsbetiae_contig183:32282..323711691683086.6286788-CDS-L-elsbetiae_contig183:32282..32371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig183 32283..32371 +
1622815763.2935503-CDS-L-elsbetiae_contig183:32747..329731622815763.2935503-CDS-L-elsbetiae_contig183:32747..32973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig183 32748..32973 +
1691683086.638143-CDS-L-elsbetiae_contig183:32747..329731691683086.638143-CDS-L-elsbetiae_contig183:32747..32973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig183 32748..32973 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig183.5301.1prot_L-elsbetiae_contig183.5301.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig183 28127..32973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig183.5301.1

>prot_L-elsbetiae_contig183.5301.1 ID=prot_L-elsbetiae_contig183.5301.1|Name=mRNA_L-elsbetiae_contig183.5301.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=289bp
MRVTRAKQYRRHLRFFRIVYGITAPYKVILDGNFIHGCISSNVDIEQRLA
SVLQGAAMHLFVPTSARAELKALGPEFQKAYNFAIGRCRGLPLAPNRTSA
AGADEEGGANDEGGAPQKGPDPAKEILATIGAANEGKYLVASQDENLRVR
LRRVPGCPLVFVSRTVLLMEQPSGKSKAEFEKAERKKAVGTTEEEDRVLG
ILKKREREEREKARASQPKKRLKKKASAPNPLSAKKSSSSGGKGGGGGGG
GGGARAKVKAGPASASEGGGSRVRRKRKKSPQSPGSSGG
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mRNA from alignment at L-elsbetiae_contig183:28127..32973+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig183.5301.1 ID=mRNA_L-elsbetiae_contig183.5301.1|Name=mRNA_L-elsbetiae_contig183.5301.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4847bp|location=Sequence derived from alignment at L-elsbetiae_contig183:28127..32973+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAGTTACACGAGCGAAGCAGTACCGGAGACACCTTCGGTTCTTCCG
GATAGTCTACGGAATTACGGCTCCATACAAGGTAGGCTGCCCCAACCCGC
AAAAACGATATAAAACTTGACAGTCCCGCCGCAAGAAATCAAGTTATTCT
AATGGCGAGGCGCGCTTGAGTTGAACTGGAATGGCAACAGTACGAGAGCA
GCAGACGCCAACCTGTAAATGACAAGAAACCGTCTGGTCCCTCCTGGCTA
GGTAACTAGCTGGGTCCATTCTATTTTCTTTCTTGGCTGACTGCTGCGGT
GGTGTCTCCACTCTCCACTCCCTCCTTGTACACGCAGCAGCAGTGCGCTC
CATCATGGCGTCTCCGACCGTTGTGTACGTATGTATGTATGTCCATACAT
ACGTATGTTGCACTGCCGACACCGACAGATGGCCGGGCAAGGAGGCGGGG
GGAGTAGAGAGATTCAGTATGTGCATTAACTCTGTTTTTTGCTCAACTCC
CCTGCGGTTTCACGCCGTCTGCGTCGAGCGCTTATTGTACAAGCGTGATG
GACTGACTGCTTGCTGCCTTCTCACCACCTTAACCCTACTACATACTTGC
TGTCGATGGACCATGCACTTTCAAGCACGAGGAGAAAAGATCTCGGGCGT
GCACAGATTAGGGCTGGACTGACGCCTGCCTCCTTCGGCGCGACATATTA
CATACCAGCTAGATGGCTGCAAGCGTGGTGGCCCGTGCGTTACCTGCGAA
CGGTGCCGATCAACATGAGCTTGTCGCGCTAATTGCGTGGTTGGCGTTTT
AGTCGAGATATTCTAGATCTTACACCGCGCTTCGTACATACATCTATTGC
ACTTCCTCTTATTGGCTTTTTTTCTCCTTTTCCTCCACTTCTTGTCTCCT
GCCGCGCTTGTTTACCCCCCCCTGAAATATGGCAGGTCATTCTCGACGGA
AATTTTATCCACGGCTGCATCTCATCAAATGTCGACATCGAGCAGCGATT
GGCCAGTGTTTTACAGGTGCGATTACGCATTTCCGCATCCAAATGTGAAT
ATGTTCGGTCATCCCATTCGGCATTTCCGTCGCCGAAAAGCCCTCGTTGT
GGTCTCACGGCACGTTGAACCTCCTCTACTAATTAGTTATACATATGTAT
GTTGTTAGGTTCTTGGAACTCTGTTTTTTGCCATCCTAATGAAGTCCAGA
GACGGACTTGGTATCTGCTGTCTAGTCTCTTGCGGTGTTACAAACAGGGT
CTTCGGTTTGTGTTGTGGTGTGAAGGGAGAAGGAGCCAACCGAACTAGCT
CCACGCAAGAAGAGTGCGCCCGGTATTGGTCGCATGCCGTGGGGTAGGCA
CAACTTCCTGGCAGCTGTAGACTAGTGCTTGTCTGTGGGTGGGTGTTTAT
TGCCTCGGCCCTGCAGATGCCTCCTAAAAGTATCCCCCCGCGTGTTTGGC
GCTCAGGGTCCGTAGCGTAGACCGCAGCACAACGGGCCGTGGTGTGTCTC
ATATAGCAATACGAACTGTGCGCAAGAAAGAGCCTTGGTGGTGCTTCGCT
GCCTGTTTTCCTCGCCTTTTTTTCGTTTGAGTGCGCGCCTCCCCTTCTCG
CGCATCCCGCCTGCCTGGTCACTCACGAGATAAGCCGCCCGCCTTGTTCC
CAGCGGGCGTTGTGTTGCGTTGCCGGATGTCCGGAAAGGGTGCTTATTGG
TCTGAAAAGTTGTCCCCCTCCGCTCCGCCTTTCTGTGCGTCCGCGGCAAC
GATAAATGGAAGGGGGCAGCGATGCACCTCTTTGTCCCGACGAGCGCGAG
GGCAGAGCTGAAGGCGCTGGGCCCGGAGTTTCAGAAGGCGTACAATGTGA
GCAATGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGCGCCTGCT
GTATCATAGGCAGTGTGGTATAGTTGTGCCGGGTAGACGCCGCATGTGAG
TTCGTGCTCCCGCCAGCAGGGGCGTCTTCTGCGCTGTATGTCATGGTGAG
TACCAAAACCTTTTAGGTGTTCAAGTAACATGGGTAGTATTTTAAGAAAT
AAACGATGAATCAAAGATGGAACCTACCCCACACTAGAGCAAGGACTCGA
TATGGGGTTCAAACGGTATTCCATACAGTGACGTCATGATAGGGCCATGT
GCAAGGCAAGGGTTTTGGACTCTGCCTTTGTCCAGCGACGTAATTTCACC
TTCTATCTCGTACTGAGGGGCCATTTGTGTCCTCTTTTTTCTTTCTGGTG
GATGTCTGCGACGTTTGGGCCTGTGCAAAGCCAGCACTAACGCCCCCGCT
GTGCTCCGCTCTCGACTCCCGCGCAAACGGTTGCCCGGCAGTTCGCGATA
GGGCGCTGCAGAGGGCTCCCCCTTGCCCCAAACCGCACCTCGGCGGCAGG
GGCGGATGAGGAGGGGGGCGCGAACGACGAGGGAGGGGCGCCGCAGAAAG
GTCCGGACCCGGCGAAGGAGATTCTTGCGACGATAGGGGCGGCCAACGAG
GGGAAATACTTGGTCGCGTCTCAGGTACGGCGGCGGTACAGCAGTATCTA
CATGCGTACTATGTATTTTTCGGGTGTGTGCTGATGTACACATGCAGGCA
TGGCGGGCGGGGAGGGAGACAATACGTGTCTATCTCCTCCCATTCGGGCC
CGTCAGCCCTCCTCCACCCTACCCCTCCCGCCTGTTGAAACGCCTCGACG
CGCGCGACATGCGCTGGGTGCAGTCCCTGCCTCCCTGCCTAGCCGCCTGT
TATTTCACACACACACACACACACACACACACCCTTTGTGGCGTGCACCG
CCCCTGAAGGTTTCACAGGGACGGTGTTCTCGTAGTGTTACACGACAGTT
TCGGGTGCTCATGAAAGAGGCGTTTTCGAGTATTTACCCTTCCCTCTGCT
GCATTGAGGTAGTATGAGTTTACAAGTATGTTTATATACGTCTCGGCTGA
GACTGAAAAGGGCAACAAAATGTTAATGTTGGGTGGTGCCTGTCATGAGG
GGCAGGAGCGGGGCCCCGTCTCGAGAGAGGCCCCGTGTCCGATGTTCCCC
ACACGGGACCCCCCACACACACACCCTCCTCCCTTTGTTTCCGCACAGAA
GCCGCGCTCTGCACTTGCTCTCGTCTACTTCATCCTCTCTTGATACTGCG
TGTCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCGCTCCCGCTGCCTCTGCGTCCGCTCCTTCTTCTTTNNNNNNNN
NNCCCCCCTTTTTTTCCCACACAAGCCCCCCCCTCCCCTTTCCTCCCTCC
CCCTTCCCCCCCTTTTTTTCTGGGTTCCCCCCCCCCCCCCCCCCCCCCGG
CGCCCGATGCATCGCTTTTTTACCCTGCGGCGTTTTCGGTCTCCCCTCGC
GTTGCTCGTCTGTTGCCTCTTGCGTCTTCGGCAGGACGAGAACCTGCGAG
TGCGGCTGAGGCGGGTGCCAGGGTGCCCCCTGGTGTTCGTGTCGCGGACG
GTGCTGCTCATGGAGCAGCCGTCGGGCAAGAGCAAGGCCGAGTTCGAGAA
GGCCGAGGTGTGGAAGGAGCTGCCGCGATGTTTTGACCCCCCCCCCCCGA
TGTTTTATTTCGCTGTTGTCCCCCTGTTGTTGTTGATTATCACGTTAGCT
CTCTAGTCCAAAAATATCCTTGGGGACCCCGTGGTCACAAAACAAGTGTG
CCTTGTTTGAATTTAATATTTGTTGGCTCGGGATCTTTCATTTGGGTAAC
GTACTGCAGACCGGCAGCGTTCGCAGCGCCTGCTGTTTCCTCGGCCATGG
GGAGCGCTGGCTCTTGAATGGCCAACAGATCTTGTGGAGAGATGGATGCT
TGGACCGTCTCCTTCCAGCTCCACGCGTTTCTCTTTTCAACTCACGGGGG
CTGTGCTGTCTCTCTCTGGGCTGCTGTATGCGTGTGCTTTTTTTTTTTGT
CTCTGGGCCCCTCCTCCCTCCTTACCGTCCCTGCCTCTGCTGCTGCACGC
TGTCCGGCGTGCGGCTGCTGTTGTTGGCTCTGGAAAAATCCTCGCCCGCG
CACGGGATTATTCAATGGAAAAACCGGGGTTTGCTCAATGGAAAACCGTC
GCGGACCCTCGTGCGTCGCACAACCCTTGCTGTGCTGGTTCTGCCGCGTG
GTGCAGCGGAAGAAGGCCGTGGGGACGACCGAAGAAGAGGACCGGGTTCT
CGGCATTCTCAAAAAGAGGGAGCGGGAGGAGCGCGAGAAAGCGAGGTGAA
TGGGGCGAGGGGGGTATGCGCGCTTTGATTTGGTTGATTTCCGTCGTCAT
TGTACGTACGTGTAGGTCATTTCGGAGGACATCGAGGCTTTTTGACGAGA
CGCTTCCTGACGCGAGCTTCAAGGCCCCCGCGTCTGCAAAAAGCAAGCAT
AAATACTTCTAGTTTTCGAGACGGAAAAGTTGATTTTCCCCTCGGAGTAT
GTATGTACGTACTTCGCATTTGCACGCGGCTCAAGTCATTGTTTTTGTTT
TTTGCTGGCGGTAAAACCCCAGTCGGTCCCACTGACCCCTCTGTTTACGT
CGCCTTGTGCCCGCCTCTGCCTTGCTGTTGTCTGTGGGCCGTCCGGTCCG
TGTGCCGGGTGCACCAACCAGGGCATCACAACCAAAAAAGCGCCTGAAAA
AGAAGGCATCTGCCCCGAACCCGCTGTCCGCAAAAAAGAGCAGCAGCTCT
GGCGGGAAGGGCGGAGGCGGAGGCGGCGGCGGCGGCGGCGCGAGGGCTAA
AGTAAAAGCAGGCCCCGCGTCCGCCTCTGAAGGTGGGGGAAGCCGCGTGC
GGAGAAAGCGAAAAAAATCGCCGCAGTCGCCCGGCAGCAGCGGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig183:28127..32973+

>mRNA_L-elsbetiae_contig183.5301.1 ID=mRNA_L-elsbetiae_contig183.5301.1|Name=mRNA_L-elsbetiae_contig183.5301.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1734bp|location=Sequence derived from alignment at L-elsbetiae_contig183:28127..32973+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAGTTACACGAGCGAAGCAGTACCGGAGACACCTTCGGTTCTTCCG
GATAGTCTACGGAATTACGGCTCCATACAAGATGAGAGTTACACGAGCGA
AGCAGTACCGGAGACACCTTCGGTTCTTCCGGATAGTCTACGGAATTACG
GCTCCATACAAGGTCATTCTCGACGGAAATTTTATCCACGGCTGCATCTC
ATCAAATGTCGACATCGAGCAGCGATTGGCCAGTGTTTTACAGGTCATTC
TCGACGGAAATTTTATCCACGGCTGCATCTCATCAAATGTCGACATCGAG
CAGCGATTGGCCAGTGTTTTACAGGGGGCAGCGATGCACCTCTTTGTCCC
GACGAGCGCGAGGGCAGAGCTGAAGGCGCTGGGCCCGGAGTTTCAGAAGG
CGTACAATGGGGCAGCGATGCACCTCTTTGTCCCGACGAGCGCGAGGGCA
GAGCTGAAGGCGCTGGGCCCGGAGTTTCAGAAGGCGTACAATTTCGCGAT
AGGGCGCTGCAGAGGGCTCCCCCTTGCCCCAAACCGCACCTCGGCGGCAG
GGGCGGATGAGGAGGGGGGCGCGAACGACGAGGGAGGGGCGCCGCAGAAA
GGTCCGGACCCGGCGAAGGAGATTCTTGCGACGATAGGGGCGGCCAACGA
GGGGAAATACTTGGTCGCGTCTCAGTTCGCGATAGGGCGCTGCAGAGGGC
TCCCCCTTGCCCCAAACCGCACCTCGGCGGCAGGGGCGGATGAGGAGGGG
GGCGCGAACGACGAGGGAGGGGCGCCGCAGAAAGGTCCGGACCCGGCGAA
GGAGATTCTTGCGACGATAGGGGCGGCCAACGAGGGGAAATACTTGGTCG
CGTCTCAGGACGAGAACCTGCGAGTGCGGCTGAGGCGGGTGCCAGGGTGC
CCCCTGGTGTTCGTGTCGCGGACGGTGCTGCTCATGGAGCAGCCGTCGGG
CAAGAGCAAGGCCGAGTTCGAGAAGGCCGAGGACGAGAACCTGCGAGTGC
GGCTGAGGCGGGTGCCAGGGTGCCCCCTGGTGTTCGTGTCGCGGACGGTG
CTGCTCATGGAGCAGCCGTCGGGCAAGAGCAAGGCCGAGTTCGAGAAGGC
CGAGCGGAAGAAGGCCGTGGGGACGACCGAAGAAGAGGACCGGGTTCTCG
GCATTCTCAAAAAGAGGGAGCGGGAGGAGCGCGAGAAAGCGAGCGGAAGA
AGGCCGTGGGGACGACCGAAGAAGAGGACCGGGTTCTCGGCATTCTCAAA
AAGAGGGAGCGGGAGGAGCGCGAGAAAGCGAGGGCATCACAACCAAAAAA
GCGCCTGAAAAAGAAGGCATCTGCCCCGAACCCGCTGTCCGCAAAAAAGA
GCAGCAGCTCTGGCGGGAAGGGCGGAGGCGGAGGCGGCGGCGGCGGCGGC
GCGAGGGCTAAAGTAAAAGCAGGCCCCGCGTCCGCCTCTGAAGGTGGGGG
AAGCCGCGTGCGGAGAAAGCGAAAAAAATCGCCGCAGTCGCCCGGCAGCA
GCGGCGGCGGCATCACAACCAAAAAAGCGCCTGAAAAAGAAGGCATCTGC
CCCGAACCCGCTGTCCGCAAAAAAGAGCAGCAGCTCTGGCGGGAAGGGCG
GAGGCGGAGGCGGCGGCGGCGGCGGCGCGAGGGCTAAAGTAAAAGCAGGC
CCCGCGTCCGCCTCTGAAGGTGGGGGAAGCCGCGTGCGGAGAAAGCGAAA
AAAATCGCCGCAGTCGCCCGGCAGCAGCGGCGGC
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