mRNA_L-elsbetiae_contig1829.5294.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1829.5294.1
Unique NamemRNA_L-elsbetiae_contig1829.5294.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1829.5294.1 vs. uniprot
Match: D7FZF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF1_ECTSI)

HSP 1 Score: 314 bits (804), Expect = 5.930e-88
Identity = 394/894 (44.07%), Postives = 457/894 (51.12%), Query Frame = 3 
Query:  954 EGNRVVDAVLHVIKLGWPWPHEKTSSDKTRSAQXXXXXXXXXXXXXXXXXXXXXXHPETVEEVNQLFETVVGMIKLGIKLGWPWTPESSGSTASSASAAGRQQDPTPQ-EGTSEIFSAGGRTTAPRNQPQQQGLEDGGNDDSGAASRGRRLTFSRVRGAIEQPLSILGKPLVRVIRAGSRAGSSAT----TTGSAVGTRLLSGNGPAPP-----LISLPPAAAALRQAGSERSGSSPDPDARRRWQPPQAKRRRGKSLLPGSRHAPGVGASGSXXXXXXAQGSPERTTASGRGWTSPTIVLDENEWDMVAAEGRKGEXXXXXXXXXXXXXXXXXXXXXXRGVLSXXXXXXXXXXXXXXXXXXXXXXGG-----------RRGEPKEATPEQPAYNRNRVGEWAAVQLSPLIPADANAARNANPGEEGG----------IPWWRAAAAVAVGVGAALYGPVSRLPALVFKGDDXXXXXXXXXXXXXXXXXXRDEGWQRGALSRAVEDAAEALRLPSARPLASSSSXXXPEESPLEPKPKLQQLXXXXXXXXXAGETYSGLRGRRRVALLVDKAAMTSRRARLWTLLKRKSRARAEPLLAGVDEGISTLSMLLTPSGLLPPLAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGSAPQAVGGAGWNVFGFFPKDKVVDDSSALP---VVLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNDSTAVLDETEPNAVSAWPKSALVEGLDPRAQQVEAAIREALRSAFGYGLDIPTAGVPAETLEAATLAAGSAAVAEGTKQLLEGKASSPTARYLDDLSPAGGGSGGGDAVASIEAAEKGAADGLWMGGEAAAYAAGAAAG 3533
            EGN+VVDAVL+ I LGWPW       +K  S Q XXXXXXXXXXXXXXXXXXX                  GMIKLG+KLGWPWTPES+   A++ +  G     TP  +G S+          P    +++G+      DSG  +RG R +FSRV+ AI    ++LG  L+R       A  + T    T   A     ++G   APP      +SLPPAAAALR+     +G  P P  R  W+PP    R GKSL+      PGV                ER TA+                           XXXXXXXXXXXXXXXXX     +G                         GG           R  + +E      AYNRN VGEWA+V++SP     A+AA     G +            +PWW+A AAV VGVGAALY PV+RLP L+FK +                    +EG Q+G LS+ V+          ARP    +S       P EP+P       XXXXXXX   T SG R R+ VA LVD+AA  SRRARLWTLLKR+SRARAEPLL  VD  I    M LTPS LL P  E                                   ++ SAPQAVGGAGWN+FGFFPKDK  D   A P   V  EEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     N+  A      P    AWPKSA ++GLDPRAQ VEAA+R+ALRSAFGYGL  PTAGVPAETLEAATLAAG+AAVAEG KQLLEGK+SSPT RYLD+L P G                    DGLW+G EAAAYAAGAAAG
Sbjct:   43 EGNQVVDAVLYAINLGWPWSQVAALGEKVVSPQLXXXXXXXXXXXXXXXXXXX------------------GMIKLGVKLGWPWTPESTSPAAAAPNQEGVMTGATPPLDGESKELPLSFPQVPPDPPQEEEGV-----GDSGPPTRGGR-SFSRVKEAIVG--TVLGSRLLRTTTTTGGAPGAITKRSSTADDAAPLPSVAGAPAAPPRSAAPTLSLPPAAAALRRIDGSSAG--PAPAGRAPWRPPGY--RWGKSLVSNMSGLPGV--------------ESERVTAT---TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGVQGQQEEARQRQLSSRRMSVFRALSTTAGGVATRLPLMKKSRSDDAREQDLPDQAYNRNSVGEWASVEVSPPASTKADAAEGGANGAQXXXXXXXXXXXXVPWWQAGAAVLVGVGAALYRPVNRLPGLLFKDEKEEEQRRRQG----------EEGRQQGTLSQ-VDATTSPASFQLARPAEEVASV------PPEPRPN-----PXXXXXXXXXTTTSGSRARQGVAGLVDRAATMSRRARLWTLLKRRSRARAEPLLTSVDTSI----MSLTPSELLSPPVEEQETALSSSSGRGPEESIGGGAGNGDATAT-----SEVSAPQAVGGAGWNLFGFFPKDKFSDYLPAGPSPVVEGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETVAKLAKASASWSKSGDTEDNEPEAXXXXXXP----AWPKSAWLKGLDPRAQ-VEAAMRDALRSAFGYGLVAPTAGVPAETLEAATLAAGNAAVAEGAKQLLEGKSSSPTGRYLDELGP-GXXXXXXXXXXXXXXXXXXXTDGLWLGAEAAAYAAGAAAG 852
[Close]
BLAST of mRNA_L-elsbetiae_contig1829.5294.1 vs. uniprot
Match: A0A6H5KSL4_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSL4_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 3.640e-70
Identity = 394/941 (41.87%), Postives = 470/941 (49.95%), Query Frame = 3 
Query:  774 IMSAPL--EDAGNGDAQKRYESWGISASSVPTSAAPVREPEKPVAVQPSLGEPPPLEKQQ-------------TDEGNRVVDAVLHVIKLGWPWPHEKTSSDKTRSAQXXXXXXXXXXXXXXXXXXXXXXHPETVEEVNQLFETVVGMIKLGIKLGWPWTPESSGSTASSASAAGRQQDPTPQEGTSEIFSAGGRTTAPRNQPQQQGLEDGGNDDSGAASRGRRLTFSRVRGAIEQPLSILGKPLVRVIRA-GSRAGSSATTTG------SAVGTRLLSGNGPAPP-----LISLPPAAAALRQAGSERSGSSPDPDARRRWQPPQAKRRRGKSLLPGSRHAPGVGASGSXXXXXXAQGSPERTTAS---------------------GRGWT-SPTIVLDENEWDMVAAEGRKG--EXXXXXXXXXXXXXXXXXXXXXXRGVLSXXXXXXXXXXXXXXXXXXXXXXGGRRGEPKEATPEQPAYNRNRVGEWAAVQLSPLIPADANAARNANPGEEGG-IPWWRAAAAVAVGVGAALYGPVSRLPALVFKGDDXXXXXXXXXXXXXXXXXXRDEGWQRGALSRAVEDAAEALRLPSARPLASSSSXXXPEES---PLEPKPKLQQLXXXXXXXXXAGETYSGLRGRRRVALLVDKAAMTSRRARLWTLLKRKSRARAEPLLAGVDEGISTLSMLLTPSGLLPPLAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA----KGSAPQAVGGAGWNVFGFFPKDKVVD--DSSALPVVLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNDSTAVLDETEPNAVS---------------AWPKSALVEGLDPRAQQVEAAIREALRSAFGYGLDIPTAGVPAETLEAATLAAGSAAVAEGTKQLLEGK 3368
            +++APL  E +  G  Q+   SWG S SS+P    P R+P    A +P                          +EGN+VVDAVL+ I LGW W       +K  S Q XXXXXXXXXXXXXXXXXXXXX                    LG+KLGWPWTPES+     S +AA   Q+      + E+  +    T P + P+++G+ D     SG  +RG R +FSRV+ AI    ++LG  L+R      + AG+   TT        A     ++G   APP      +SLPPAAAALR+  ++ S   P P  R  W+PP    R GKSL+      P               G  ER TA+                     G GW+ S     DE      A  G +G  E                       GV +                             ++ +P+Q AY RN VGEWA+V++SP     AN A+          +PWW+A AAV VGVGAALY PV+RLP L+ K +  XXXXXX            +EG Q+G LS       +A + P++  LA  +     EE    P EP+P       XXXX   AG T SG R R+ VA LVD+AA  SRRARLWTLLKR+SRARAEPLLA VD  I    M LTPS LL P  E                                   A    + SAPQAVGGAGWN+FGFFPKDK  D   +   PVV  E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                AWPKSA ++GLDPRAQ VEAA+R+ALRSAFGYGL  PTAGVPAETLEAATLAAG+AAVAEG KQLLEGK
Sbjct:    1 MVAAPLGSERSTGGKQQRNPGSWGSSTSSLPM-LPPARQPSDVSAPRPPXXXXXXXXXXXXXXXXXXXXXXXXAEEGNQVVDAVLYAINLGWLWSQVAALGEKVVSPQLXXXXXXXXXXXXXXXXXXXXXXX------------------LGVKLGWPWTPEST-----SPAAAAPDQEGVMMGASKELPLS--LPTVPPDLPREEGVSD-----SGPPTRGGR-SFSRVKEAIVG--TVLGSRLLRTTTTMTTTAGAPGATTKRSCTAHEAAPLTSVAGAPAAPPRSAAPTLSLPPAAAALRR--TDGSSPGPAPAGRAPWRPPGY--RWGKSLVSNMSGLP--------------DGESERVTAATDXXXXXXXGRQVAGVGAASAGTGWSPSAXXXXDEQGGKTEATRGVQGQQEEAQQQQLSARRMSVFRALATTAGGVATRLPLMKKSRSEDAQ---------------EQDSPDQ-AYKRNSVGEWASVEVSPPASKGANGAQGXXXXXXXXXVPWWQAGAAVLVGVGAALYRPVNRLPGLLLKDEKEXXXXXXQG----------EEGRQQGTLSLV-----DATKSPASFQLARPA-----EEGALVPPEPRPN-----PXXXXPPAAGTTSSGSRARQGVAGLVDRAATMSRRARLWTLLKRRSRARAEPLLASVDTSI----MSLTPSELLSPPVEEQETALSSSSGRGPQEPVGGGAGGVAASVGVGKGDATTTSEVSAPQAVGGAGWNLFGFFPKDKFSDYLPAGPSPVVEGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAWPKSAWLKGLDPRAQ-VEAAMRDALRSAFGYGLVAPTAGVPAETLEAATLAAGNAAVAEGAKQLLEGK 843
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1829.5294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZF1_ECTSI5.930e-8844.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSL4_9PHAE3.640e-7041.87PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1829contigL-elsbetiae_contig1829:12847..17063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_001580.1
Exons3
Model size3533
Cds size3528
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1829.5294.1prot_L-elsbetiae_contig1829.5294.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1829 12852..17063 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815762.4993167-UTR-L-elsbetiae_contig1829:12846..128511622815762.4993167-UTR-L-elsbetiae_contig1829:12846..12851Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1829 12847..12851 +
1691683086.113915-UTR-L-elsbetiae_contig1829:12846..128511691683086.113915-UTR-L-elsbetiae_contig1829:12846..12851Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1829 12847..12851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815762.509808-CDS-L-elsbetiae_contig1829:12851..142101622815762.509808-CDS-L-elsbetiae_contig1829:12851..14210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1829 12852..14210 +
1691683086.1249473-CDS-L-elsbetiae_contig1829:12851..142101691683086.1249473-CDS-L-elsbetiae_contig1829:12851..14210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1829 12852..14210 +
1622815762.519245-CDS-L-elsbetiae_contig1829:14279..161241622815762.519245-CDS-L-elsbetiae_contig1829:14279..16124Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1829 14280..16124 +
1691683086.1325371-CDS-L-elsbetiae_contig1829:14279..161241691683086.1325371-CDS-L-elsbetiae_contig1829:14279..16124Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1829 14280..16124 +
1622815762.528727-CDS-L-elsbetiae_contig1829:16739..170631622815762.528727-CDS-L-elsbetiae_contig1829:16739..17063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1829 16740..17063 +
1691683086.140648-CDS-L-elsbetiae_contig1829:16739..170631691683086.140648-CDS-L-elsbetiae_contig1829:16739..17063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1829 16740..17063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1829.5294.1

>prot_L-elsbetiae_contig1829.5294.1 ID=prot_L-elsbetiae_contig1829.5294.1|Name=mRNA_L-elsbetiae_contig1829.5294.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1176bp
MRLRGHPWLCLGAAALVPVIIQGAFVSTPRLPRSSDVVRPVQQQHHLPSR
IAVRGVAAARVYAKPTTRGPPAALNSLRLGRGGGDHSRALGGKGSKIVLH
GVGSPEDTNGNSNSNSNSNSNSSARGLIDETGDRGAAEGGEGVEGQGAGN
SGGSLIAFVGRVPVRPPRVVQPRAKSSQSRRARKADVPTTTPSGGFVEAG
ALPPPPLPPPSLAPVVTEKSDTRPWRWMQLPWQTLKEGIRDTVIPPTDLP
STTSATIMSAPLEDAGNGDAQKRYESWGISASSVPTSAAPVREPEKPVAV
QPSLGEPPPLEKQQTDEGNRVVDAVLHVIKLGWPWPHEKTSSDKTRSAQQ
QQRPGQSQLRRRQQQQQQQQQHPETVEEVNQLFETVVGMIKLGIKLGWPW
TPESSGSTASSASAAGRQQDPTPQEGTSEIFSAGGRTTAPRNQPQQQGLE
DGGNDDSGAASRGRRLTFSRVRGAIEQPLSILGKPLVRVIRAGSRAGSSA
TTTGSAVGTRLLSGNGPAPPLISLPPAAAALRQAGSERSGSSPDPDARRR
WQPPQAKRRRGKSLLPGSRHAPGVGASGSSSSSSSAQGSPERTTASGRGW
TSPTIVLDENEWDMVAAEGRKGEEEEEEEEEEEVQQPEWFSRRRLRGVLS
SVASGVARRLLLISGSKDGAAAGGRRGEPKEATPEQPAYNRNRVGEWAAV
QLSPLIPADANAARNANPGEEGGIPWWRAAAAVAVGVGAALYGPVSRLPA
LVFKGDDEEEAESEEQRRQRQQQQRRDEGWQRGALSRAVEDAAEALRLPS
ARPLASSSSSSSPEESPLEPKPKLQQLPQPQQPQQPAGETYSGLRGRRRV
ALLVDKAAMTSRRARLWTLLKRKSRARAEPLLAGVDEGISTLSMLLTPSG
LLPPLAEEEEEEAAGRSPLSPLSGGGGGGAEKDGSTAATAAAAKGSAPQA
VGGAGWNVFGFFPKDKVVDDSSALPVVLEEEEEEEEDDDDDDIDIDDGEG
ELEELGAKGVGVSAAVVSAAATAAKLASASASSSSGNDSTAVLDETEPNA
VSAWPKSALVEGLDPRAQQVEAAIREALRSAFGYGLDIPTAGVPAETLEA
ATLAAGSAAVAEGTKQLLEGKASSPTARYLDDLSPAGGGSGGGDAVASIE
AAEKGAADGLWMGGEAAAYAAGAAAG
back to top

mRNA from alignment at L-elsbetiae_contig1829:12847..17063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1829.5294.1 ID=mRNA_L-elsbetiae_contig1829.5294.1|Name=mRNA_L-elsbetiae_contig1829.5294.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4217bp|location=Sequence derived from alignment at L-elsbetiae_contig1829:12847..17063+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGAATGAGGCTTCGGGGACACCCATGGCTCTGCCTGGGCGCAGCTGCT
TTGGTGCCCGTGATAATCCAGGGCGCCTTCGTATCTACGCCACGGCTTCC
AAGATCTTCTGACGTCGTTAGGCCAGTGCAACAACAGCATCACTTGCCCT
CACGCATTGCTGTCAGGGGCGTTGCCGCTGCACGAGTCTACGCAAAACCC
ACCACAAGAGGCCCCCCTGCGGCGTTAAACTCCTTGCGACTAGGTAGAGG
TGGTGGCGATCACAGTCGAGCGCTTGGAGGAAAGGGGAGCAAGATTGTTT
TGCACGGGGTGGGTTCGCCGGAAGACACGAACGGCAACAGCAACAGCAAC
AGCAACAGCAACAGCAACAGCAGCGCGCGAGGGCTCATCGATGAAACGGG
CGACAGAGGCGCGGCGGAGGGAGGAGAAGGAGTCGAGGGGCAAGGAGCGG
GCAACAGTGGTGGTAGTCTTATTGCGTTTGTGGGACGCGTCCCAGTGAGG
CCGCCACGTGTTGTTCAACCACGAGCAAAGTCGTCACAGTCCCGCCGTGC
GAGGAAGGCCGACGTGCCAACGACGACCCCCTCCGGCGGTTTCGTGGAAG
CGGGCGCGCTGCCACCACCACCGCTACCGCCACCATCGTTGGCCCCCGTG
GTGACTGAAAAATCAGACACGCGACCGTGGAGATGGATGCAGCTTCCGTG
GCAAACCCTGAAGGAAGGCATTCGAGACACGGTGATACCGCCCACCGATC
TGCCGAGCACCACGAGCGCGACGATAATGTCGGCTCCGCTAGAGGATGCT
GGCAATGGCGACGCGCAGAAACGCTACGAATCGTGGGGTATCTCGGCCTC
TTCGGTCCCCACATCAGCAGCACCGGTGCGCGAGCCGGAAAAACCCGTCG
CGGTGCAACCATCCCTCGGTGAACCGCCGCCGCTCGAGAAGCAACAGACG
GACGAGGGGAATCGAGTCGTTGATGCGGTGCTGCACGTCATTAAGCTTGG
GTGGCCGTGGCCTCACGAGAAAACCAGCAGCGACAAGACGAGGTCGGCGC
AGCAACAGCAGCGGCCGGGGCAGTCGCAGCTGCGGCGGCGGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCACCCTGAGACGGTTGAAGAAGTAAACCAACT
CTTCGAGACAGTGGTGGGCATGATCAAGCTCGGCATCAAGCTTGGCTGGC
CTTGGACACCAGAGAGTAGCGGCTCCACCGCCTCTTCTGCTTCTGCCGCC
GGGCGGCAGCAAGACCCAACGCCACAGGAAGGAACGAGCGAGATTTTTTC
GGCGGGTGGGCGGACAACAGCCCCTCGCAACCAGCCTCAACAGCAGGGCC
TGGAAGATGGTGGTGTTGAACGGCTTGGCAGCATGGGCAATGATGGCGTG
GTGGCGCCTTTGTCAAGCCCTATCTTCGCCGAGAATGACGACAGCGGTGC
CGCATCGCGCGGTCGCCGCCTCACCTTTTCCCGTGTGAGAGGAGCGATCG
AGCAGCCGCTCTCTATTCTCGGCAAGCCGCTCGTCCGCGTGATCAGAGCG
GGGTCTCGGGCCGGAAGCAGCGCCACGACGACGGGTTCAGCGGTAGGCAC
TCGCCTGCTCAGCGGGAACGGTCCTGCCCCGCCCTTGATCTCGCTGCCGC
CGGCCGCTGCAGCGCTGCGGCAGGCAGGCAGCGAAAGGAGTGGCAGCAGC
CCAGACCCCGACGCTCGGCGGCGGTGGCAACCACCACAGGCCAAGCGGCG
GCGGGGAAAGTCGTTGTTGCCCGGCTCCCGTCATGCGCCTGGCGTAGGGG
CGAGTGGCAGCAGCAGCAGCAGCAGCAGTGCGCAAGGCTCGCCCGAGCGT
ACAACGGCTTCTGGTAGGGGTTGGACGTCGCCCACCATCGTGTTGGACGA
AAACGAGTGGGATATGGTGGCAGCAGAGGGGCGAAAGGGAGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGTACAGCAGCCGGAGTGGTTTTCCAGG
AGGCGACTTCGCGGCGTGCTCTCTTCGGTGGCAAGCGGAGTTGCGCGCCG
GCTCCTCCTCATCAGCGGCAGCAAGGATGGGGCGGCGGCGGGTGGAAGAA
GGGGAGAACCGAAGGAGGCGACCCCCGAACAACCGGCGTACAACAGAAAC
AGGGTCGGAGAGTGGGCGGCGGTGCAGCTTTCGCCTCTGATCCCCGCCGA
CGCGAACGCGGCGAGGAACGCCAACCCCGGAGAGGAAGGCGGCATCCCCT
GGTGGCGGGCGGCAGCCGCCGTGGCTGTCGGGGTCGGAGCCGCCCTGTAC
GGGCCTGTAAGCAGGCTGCCGGCGTTGGTGTTCAAGGGCGACGACGAGGA
AGAGGCGGAGAGCGAAGAGCAGCGGCGACAGCGACAGCAGCAGCAACGGC
GAGACGAGGGGTGGCAACGGGGGGCCCTTTCGCGTGCGGTGGAAGACGCG
GCAGAAGCGCTGCGTCTCCCGTCGGCTCGTCCGCTCGCCTCCTCCTCCTC
CTCCTCCTCGCCGGAGGAGTCACCCCTAGAGCCAAAGCCGAAGCTTCAGC
AGCTGCCGCAGCCGCAGCAGCCGCAGCAGCCGGCCGGGGAGACCTACTCC
GGCCTGCGCGGGCGGCGGAGGGTGGCGCTCCTGGTGGACAAAGCGGCGAT
GACGTCGAGGAGAGCGAGGCTGTGGACGCTGCTGAAGCGCAAGTCCAGGG
CGCGCGCGGAGCCTCTTCTCGCCGGGGTGGACGAGGGCATCAGCACGCTC
TCGATGCTGCTGACCCCGTCGGGGCTGCTGCCGCCGCTGGCAGAGGAGGA
GGAAGAGGAGGCCGCCGGTCGGTCCCCGCTCTCACCTCTCAGTGGCGGCG
GCGGCGGCGGCGCTGAGAAGGACGGGTCGACGGCGGCGACGGCGGCCGCG
GCGAAAGGGAGCGCTCCTCAGGCGGTGGGCGGGGCGGGGTGGAACGTCTT
CGGATTTTTCCCGAAGGACAAGGTTGTCGACGACTCGTCCGCCCTCCCGG
TGGTGCTTGAAGAGGAGGAGGAGGAGGAGGAAGACGACGACGATGACGAC
ATCGACATCGACGACGGCGAGGGGGAGCTCGAGGAGCTGGGGGCAAAGGG
CGTCGGGGTGTCAGCGGCGGTGGTTTCGGCGGCCGCGACGGCCGCGAAGC
TGGCGAGCGCGTCGGCGTCGAGCAGCAGTGGCAATGACTCCACCGCCGTC
CTGGACGAGACTGAGCCAAACGCGGTCTCGGCGTGGCCGAAGTCAGCCTT
GGTGGAAGGCCTGGACCCGAGAGCACAGGTGCGTACCACATGTACATAAA
TGCTGCTGTTATCGCTGCTCCGTTTTGTTTTGTGTCCTCTCCACGGCGCA
CGCAGCAGCTGGTCGTTCGGATGAGAGCACTGACCTGAGCAGGATAAGAG
CGAACACCGCCGTGTGTGTCTGGTGTCTGTCCCCGTCGGCGTGGGGTGTG
AGTTTCTGCCCTGTGGTCTTTGTGAAAGACCCGTCGAATGAACCGCAAGC
AGTACTTCGAGTGTTTACCCCGAAGACGCGGGCAGGTTTAGATATATTCG
GGGCCAGGGCGGGGTATGTATGCATGTACGTATGTCCATCTCGCCGGGTG
TATAGAATCTGTCCGAGCACCCCCGTGGTAGTCTTCCTGCTCGCCGCCAC
CCATTCTCGGTCGGTCTGGTTCTCTTGAAGCAGGACAGCAGTCATCACCT
ACTTACATACAACCCATTTTGTTTTTAATCGAAAACGTGTGTCTCCGACA
CTGCTGTATGTAGACCGAATCATAAAAAATACCACCGGCAACCTTCACGC
ACGCCTGTCGCCGTGTCCTGTGACCCCCCCTCCAACGCGACGCGATGACA
CGAAAAACGAAACTGATGGGGTGGTCGGGTGGTTGGGCGAGAGCAGGTCG
AGGCTGCCATCCGCGAGGCTCTCCGTTCGGCCTTCGGCTACGGCCTGGAC
ATCCCGACGGCGGGGGTACCGGCCGAGACGCTCGAGGCGGCGACCCTGGC
CGCCGGCAGCGCTGCCGTAGCGGAAGGCACCAAGCAGCTGCTGGAAGGGA
AGGCTAGCAGCCCGACCGCGCGATACCTGGACGATCTGAGCCCCGCCGGC
GGCGGTAGTGGCGGCGGTGACGCTGTTGCAAGTATCGAAGCTGCCGAAAA
GGGAGCGGCGGATGGGCTCTGGATGGGGGGCGAGGCGGCGGCGTACGCGG
CGGGGGCGGCAGCCGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1829:12847..17063+

>mRNA_L-elsbetiae_contig1829.5294.1 ID=mRNA_L-elsbetiae_contig1829.5294.1|Name=mRNA_L-elsbetiae_contig1829.5294.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=7056bp|location=Sequence derived from alignment at L-elsbetiae_contig1829:12847..17063+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGCTTCGGGGACACCCATGGCTCTGCCTGGGCGCAGCTGCTTTGGT
GCCCGTGATAATCCAGGGCGCCTTCGTATCTACGCCACGGCTTCCAAGAT
CTTCTGACGTCGTTAGGCCAGTGCAACAACAGCATCACTTGCCCTCACGC
ATTGCTGTCAGGGGCGTTGCCGCTGCACGAGTCTACGCAAAACCCACCAC
AAGAGGCCCCCCTGCGGCGTTAAACTCCTTGCGACTAGGTAGAGGTGGTG
GCGATCACAGTCGAGCGCTTGGAGGAAAGGGGAGCAAGATTGTTTTGCAC
GGGGTGGGTTCGCCGGAAGACACGAACGGCAACAGCAACAGCAACAGCAA
CAGCAACAGCAACAGCAGCGCGCGAGGGCTCATCGATGAAACGGGCGACA
GAGGCGCGGCGGAGGGAGGAGAAGGAGTCGAGGGGCAAGGAGCGGGCAAC
AGTGGTGGTAGTCTTATTGCGTTTGTGGGACGCGTCCCAGTGAGGCCGCC
ACGTGTTGTTCAACCACGAGCAAAGTCGTCACAGTCCCGCCGTGCGAGGA
AGGCCGACGTGCCAACGACGACCCCCTCCGGCGGTTTCGTGGAAGCGGGC
GCGCTGCCACCACCACCGCTACCGCCACCATCGTTGGCCCCCGTGGTGAC
TGAAAAATCAGACACGCGACCGTGGAGATGGATGCAGCTTCCGTGGCAAA
CCCTGAAGGAAGGCATTCGAGACACGGTGATACCGCCCACCGATCTGCCG
AGCACCACGAGCGCGACGATAATGTCGGCTCCGCTAGAGGATGCTGGCAA
TGGCGACGCGCAGAAACGCTACGAATCGTGGGGTATCTCGGCCTCTTCGG
TCCCCACATCAGCAGCACCGGTGCGCGAGCCGGAAAAACCCGTCGCGGTG
CAACCATCCCTCGGTGAACCGCCGCCGCTCGAGAAGCAACAGACGGACGA
GGGGAATCGAGTCGTTGATGCGGTGCTGCACGTCATTAAGCTTGGGTGGC
CGTGGCCTCACGAGAAAACCAGCAGCGACAAGACGAGGTCGGCGCAGCAA
CAGCAGCGGCCGGGGCAGTCGCAGCTGCGGCGGCGGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCACCCTGAGACGGTTGAAGAAGTAAACCAACTCTTCG
AGACAGTGGTGGGCATGATCAAGCTCGGCATCAAGCTTGGCTGGCCTTGG
ACACCAGAGAGTAGCGGCTCCACCGCCTCTTCTGCTTCTGCCGCCGGGCG
GCAGCAAGACCCAACGCCACAGGAAGGAACGAGCGAGATTTTTTCGGCGG
GTGGGCGGACAACAGCCCCTCGCAACCAGCCTCAACAGCAGGGCCTGGAA
GATGGTGGTATGAGGCTTCGGGGACACCCATGGCTCTGCCTGGGCGCAGC
TGCTTTGGTGCCCGTGATAATCCAGGGCGCCTTCGTATCTACGCCACGGC
TTCCAAGATCTTCTGACGTCGTTAGGCCAGTGCAACAACAGCATCACTTG
CCCTCACGCATTGCTGTCAGGGGCGTTGCCGCTGCACGAGTCTACGCAAA
ACCCACCACAAGAGGCCCCCCTGCGGCGTTAAACTCCTTGCGACTAGGTA
GAGGTGGTGGCGATCACAGTCGAGCGCTTGGAGGAAAGGGGAGCAAGATT
GTTTTGCACGGGGTGGGTTCGCCGGAAGACACGAACGGCAACAGCAACAG
CAACAGCAACAGCAACAGCAACAGCAGCGCGCGAGGGCTCATCGATGAAA
CGGGCGACAGAGGCGCGGCGGAGGGAGGAGAAGGAGTCGAGGGGCAAGGA
GCGGGCAACAGTGGTGGTAGTCTTATTGCGTTTGTGGGACGCGTCCCAGT
GAGGCCGCCACGTGTTGTTCAACCACGAGCAAAGTCGTCACAGTCCCGCC
GTGCGAGGAAGGCCGACGTGCCAACGACGACCCCCTCCGGCGGTTTCGTG
GAAGCGGGCGCGCTGCCACCACCACCGCTACCGCCACCATCGTTGGCCCC
CGTGGTGACTGAAAAATCAGACACGCGACCGTGGAGATGGATGCAGCTTC
CGTGGCAAACCCTGAAGGAAGGCATTCGAGACACGGTGATACCGCCCACC
GATCTGCCGAGCACCACGAGCGCGACGATAATGTCGGCTCCGCTAGAGGA
TGCTGGCAATGGCGACGCGCAGAAACGCTACGAATCGTGGGGTATCTCGG
CCTCTTCGGTCCCCACATCAGCAGCACCGGTGCGCGAGCCGGAAAAACCC
GTCGCGGTGCAACCATCCCTCGGTGAACCGCCGCCGCTCGAGAAGCAACA
GACGGACGAGGGGAATCGAGTCGTTGATGCGGTGCTGCACGTCATTAAGC
TTGGGTGGCCGTGGCCTCACGAGAAAACCAGCAGCGACAAGACGAGGTCG
GCGCAGCAACAGCAGCGGCCGGGGCAGTCGCAGCTGCGGCGGCGGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCACCCTGAGACGGTTGAAGAAGTAAACC
AACTCTTCGAGACAGTGGTGGGCATGATCAAGCTCGGCATCAAGCTTGGC
TGGCCTTGGACACCAGAGAGTAGCGGCTCCACCGCCTCTTCTGCTTCTGC
CGCCGGGCGGCAGCAAGACCCAACGCCACAGGAAGGAACGAGCGAGATTT
TTTCGGCGGGTGGGCGGACAACAGCCCCTCGCAACCAGCCTCAACAGCAG
GGCCTGGAAGATGGTGGTAATGACGACAGCGGTGCCGCATCGCGCGGTCG
CCGCCTCACCTTTTCCCGTGTGAGAGGAGCGATCGAGCAGCCGCTCTCTA
TTCTCGGCAAGCCGCTCGTCCGCGTGATCAGAGCGGGGTCTCGGGCCGGA
AGCAGCGCCACGACGACGGGTTCAGCGGTAGGCACTCGCCTGCTCAGCGG
GAACGGTCCTGCCCCGCCCTTGATCTCGCTGCCGCCGGCCGCTGCAGCGC
TGCGGCAGGCAGGCAGCGAAAGGAGTGGCAGCAGCCCAGACCCCGACGCT
CGGCGGCGGTGGCAACCACCACAGGCCAAGCGGCGGCGGGGAAAGTCGTT
GTTGCCCGGCTCCCGTCATGCGCCTGGCGTAGGGGCGAGTGGCAGCAGCA
GCAGCAGCAGCAGTGCGCAAGGCTCGCCCGAGCGTACAACGGCTTCTGGT
AGGGGTTGGACGTCGCCCACCATCGTGTTGGACGAAAACGAGTGGGATAT
GGTGGCAGCAGAGGGGCGAAAGGGAGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGTACAGCAGCCGGAGTGGTTTTCCAGGAGGCGACTTCGCGGC
GTGCTCTCTTCGGTGGCAAGCGGAGTTGCGCGCCGGCTCCTCCTCATCAG
CGGCAGCAAGGATGGGGCGGCGGCGGGTGGAAGAAGGGGAGAACCGAAGG
AGGCGACCCCCGAACAACCGGCGTACAACAGAAACAGGGTCGGAGAGTGG
GCGGCGGTGCAGCTTTCGCCTCTGATCCCCGCCGACGCGAACGCGGCGAG
GAACGCCAACCCCGGAGAGGAAGGCGGCATCCCCTGGTGGCGGGCGGCAG
CCGCCGTGGCTGTCGGGGTCGGAGCCGCCCTGTACGGGCCTGTAAGCAGG
CTGCCGGCGTTGGTGTTCAAGGGCGACGACGAGGAAGAGGCGGAGAGCGA
AGAGCAGCGGCGACAGCGACAGCAGCAGCAACGGCGAGACGAGGGGTGGC
AACGGGGGGCCCTTTCGCGTGCGGTGGAAGACGCGGCAGAAGCGCTGCGT
CTCCCGTCGGCTCGTCCGCTCGCCTCCTCCTCCTCCTCCTCCTCGCCGGA
GGAGTCACCCCTAGAGCCAAAGCCGAAGCTTCAGCAGCTGCCGCAGCCGC
AGCAGCCGCAGCAGCCGGCCGGGGAGACCTACTCCGGCCTGCGCGGGCGG
CGGAGGGTGGCGCTCCTGGTGGACAAAGCGGCGATGACGTCGAGGAGAGC
GAGGCTGTGGACGCTGCTGAAGCGCAAGTCCAGGGCGCGCGCGGAGCCTC
TTCTCGCCGGGGTGGACGAGGGCATCAGCACGCTCTCGATGCTGCTGACC
CCGTCGGGGCTGCTGCCGCCGCTGGCAGAGGAGGAGGAAGAGGAGGCCGC
CGGTCGGTCCCCGCTCTCACCTCTCAGTGGCGGCGGCGGCGGCGGCGCTG
AGAAGGACGGGTCGACGGCGGCGACGGCGGCCGCGGCGAAAGGGAGCGCT
CCTCAGGCGGTGGGCGGGGCGGGGTGGAACGTCTTCGGATTTTTCCCGAA
GGACAAGGTTGTCGACGACTCGTCCGCCCTCCCGGTGGTGCTTGAAGAGG
AGGAGGAGGAGGAGGAAGACGACGACGATGACGACATCGACATCGACGAC
GGCGAGGGGGAGCTCGAGGAGCTGGGGGCAAAGGGCGTCGGGGTGTCAGC
GGCGGTGGTTTCGGCGGCCGCGACGGCCGCGAAGCTGGCGAGCGCGTCGG
CGTCGAGCAGCAGTGGCAATGACTCCACCGCCGTCCTGGACGAGACTGAG
CCAAACGCGGTCTCGGCGTGGCCGAAGTCAGCCTTGGTGGAAGGCCTGGA
CCCGAGAGCACAGAATGACGACAGCGGTGCCGCATCGCGCGGTCGCCGCC
TCACCTTTTCCCGTGTGAGAGGAGCGATCGAGCAGCCGCTCTCTATTCTC
GGCAAGCCGCTCGTCCGCGTGATCAGAGCGGGGTCTCGGGCCGGAAGCAG
CGCCACGACGACGGGTTCAGCGGTAGGCACTCGCCTGCTCAGCGGGAACG
GTCCTGCCCCGCCCTTGATCTCGCTGCCGCCGGCCGCTGCAGCGCTGCGG
CAGGCAGGCAGCGAAAGGAGTGGCAGCAGCCCAGACCCCGACGCTCGGCG
GCGGTGGCAACCACCACAGGCCAAGCGGCGGCGGGGAAAGTCGTTGTTGC
CCGGCTCCCGTCATGCGCCTGGCGTAGGGGCGAGTGGCAGCAGCAGCAGC
AGCAGCAGTGCGCAAGGCTCGCCCGAGCGTACAACGGCTTCTGGTAGGGG
TTGGACGTCGCCCACCATCGTGTTGGACGAAAACGAGTGGGATATGGTGG
CAGCAGAGGGGCGAAAGGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGTACAGCAGCCGGAGTGGTTTTCCAGGAGGCGACTTCGCGGCGTGCT
CTCTTCGGTGGCAAGCGGAGTTGCGCGCCGGCTCCTCCTCATCAGCGGCA
GCAAGGATGGGGCGGCGGCGGGTGGAAGAAGGGGAGAACCGAAGGAGGCG
ACCCCCGAACAACCGGCGTACAACAGAAACAGGGTCGGAGAGTGGGCGGC
GGTGCAGCTTTCGCCTCTGATCCCCGCCGACGCGAACGCGGCGAGGAACG
CCAACCCCGGAGAGGAAGGCGGCATCCCCTGGTGGCGGGCGGCAGCCGCC
GTGGCTGTCGGGGTCGGAGCCGCCCTGTACGGGCCTGTAAGCAGGCTGCC
GGCGTTGGTGTTCAAGGGCGACGACGAGGAAGAGGCGGAGAGCGAAGAGC
AGCGGCGACAGCGACAGCAGCAGCAACGGCGAGACGAGGGGTGGCAACGG
GGGGCCCTTTCGCGTGCGGTGGAAGACGCGGCAGAAGCGCTGCGTCTCCC
GTCGGCTCGTCCGCTCGCCTCCTCCTCCTCCTCCTCCTCGCCGGAGGAGT
CACCCCTAGAGCCAAAGCCGAAGCTTCAGCAGCTGCCGCAGCCGCAGCAG
CCGCAGCAGCCGGCCGGGGAGACCTACTCCGGCCTGCGCGGGCGGCGGAG
GGTGGCGCTCCTGGTGGACAAAGCGGCGATGACGTCGAGGAGAGCGAGGC
TGTGGACGCTGCTGAAGCGCAAGTCCAGGGCGCGCGCGGAGCCTCTTCTC
GCCGGGGTGGACGAGGGCATCAGCACGCTCTCGATGCTGCTGACCCCGTC
GGGGCTGCTGCCGCCGCTGGCAGAGGAGGAGGAAGAGGAGGCCGCCGGTC
GGTCCCCGCTCTCACCTCTCAGTGGCGGCGGCGGCGGCGGCGCTGAGAAG
GACGGGTCGACGGCGGCGACGGCGGCCGCGGCGAAAGGGAGCGCTCCTCA
GGCGGTGGGCGGGGCGGGGTGGAACGTCTTCGGATTTTTCCCGAAGGACA
AGGTTGTCGACGACTCGTCCGCCCTCCCGGTGGTGCTTGAAGAGGAGGAG
GAGGAGGAGGAAGACGACGACGATGACGACATCGACATCGACGACGGCGA
GGGGGAGCTCGAGGAGCTGGGGGCAAAGGGCGTCGGGGTGTCAGCGGCGG
TGGTTTCGGCGGCCGCGACGGCCGCGAAGCTGGCGAGCGCGTCGGCGTCG
AGCAGCAGTGGCAATGACTCCACCGCCGTCCTGGACGAGACTGAGCCAAA
CGCGGTCTCGGCGTGGCCGAAGTCAGCCTTGGTGGAAGGCCTGGACCCGA
GAGCACAGCAGGTCGAGGCTGCCATCCGCGAGGCTCTCCGTTCGGCCTTC
GGCTACGGCCTGGACATCCCGACGGCGGGGGTACCGGCCGAGACGCTCGA
GGCGGCGACCCTGGCCGCCGGCAGCGCTGCCGTAGCGGAAGGCACCAAGC
AGCTGCTGGAAGGGAAGGCTAGCAGCCCGACCGCGCGATACCTGGACGAT
CTGAGCCCCGCCGGCGGCGGTAGTGGCGGCGGTGACGCTGTTGCAAGTAT
CGAAGCTGCCGAAAAGGGAGCGGCGGATGGGCTCTGGATGGGGGGCGAGG
CGGCGGCGTACGCGGCGGGGGCGGCAGCCGGGCAGGTCGAGGCTGCCATC
CGCGAGGCTCTCCGTTCGGCCTTCGGCTACGGCCTGGACATCCCGACGGC
GGGGGTACCGGCCGAGACGCTCGAGGCGGCGACCCTGGCCGCCGGCAGCG
CTGCCGTAGCGGAAGGCACCAAGCAGCTGCTGGAAGGGAAGGCTAGCAGC
CCGACCGCGCGATACCTGGACGATCTGAGCCCCGCCGGCGGCGGTAGTGG
CGGCGGTGACGCTGTTGCAAGTATCGAAGCTGCCGAAAAGGGAGCGGCGG
ATGGGCTCTGGATGGGGGGCGAGGCGGCGGCGTACGCGGCGGGGGCGGCA
GCCGGG
back to top