mRNA_L-elsbetiae_contig18268.5288.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18268.5288.1
Unique NamemRNA_L-elsbetiae_contig18268.5288.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18268.5288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18268contigL-elsbetiae_contig18268:912..2516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1606
Cds size885
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815762.0098002-CDS-L-elsbetiae_contig18268:911..17961622815762.0098002-CDS-L-elsbetiae_contig18268:911..1796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18268 912..1796 +
1691683085.8500566-CDS-L-elsbetiae_contig18268:911..17961691683085.8500566-CDS-L-elsbetiae_contig18268:911..1796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18268 912..1796 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815762.029405-UTR-L-elsbetiae_contig18268:1796..25161622815762.029405-UTR-L-elsbetiae_contig18268:1796..2516Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18268 1797..2516 +
1691683085.8607683-UTR-L-elsbetiae_contig18268:1796..25161691683085.8607683-UTR-L-elsbetiae_contig18268:1796..2516Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18268 1797..2516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18268.5288.1prot_L-elsbetiae_contig18268.5288.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18268 912..1796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18268.5288.1

>prot_L-elsbetiae_contig18268.5288.1 ID=prot_L-elsbetiae_contig18268.5288.1|Name=mRNA_L-elsbetiae_contig18268.5288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=295bp
AEEPRGAAHRSRGEQAGGARPDALLLVAALVDTLYLPKRAAVECRRLFCG
AHACSSLFLCERRRSLVPGGALIDAVPHRTSQRPSFAQGAALSRTASNAA
AVLARSASSATARRRVLCSRYPDLALVRPDHRQRVGFVLAGVERRHRGGD
PGQQREPRAPPAAAVAFGSGVSVLEEGVPDRPVGVAAAAVAADAAAAPRL
RQGREPQRAAVLEIAAVPRRRPLEQLLERQLFSGGAYHAQSRGRGRGRRR
RALVRAVHRGAGQVRVRSTIIYRFIVVTAVARPGLRAEQRRVGR*
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mRNA from alignment at L-elsbetiae_contig18268:912..2516+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18268.5288.1 ID=mRNA_L-elsbetiae_contig18268.5288.1|Name=mRNA_L-elsbetiae_contig18268.5288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1605bp|location=Sequence derived from alignment at L-elsbetiae_contig18268:912..2516+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGAAGAACCGCGCGGTGCTGCTCATCGAAGCCGAGGAGAACAAGCCGG
CGGAGCTCGACCCGACGCGCTCCTGCTCGTCGCTGCCCTCGTCGATACTC
TTTATCTTCCTAAGCGTGCGGCTGTTGAATGCCGACGGCTTTTCTGCGGT
GCACATGCCTGCAGCAGCCTCTTCTTGTGTGAAAGACGACGGTCTCTCGT
CCCGGGGGGTGCCTTGATCGACGCCGTTCCCCACCGAACATCTCAGCGAC
CCTCCTTCGCCCAGGGTGCCGCCCTCTCCCGTACCGCCAGCAACGCTGCG
GCCGTTCTCGCCAGGAGCGCCTCTTCCGCCACAGCCCGCCGGCGCGTGCT
CTGCTCCCGCTACCCCGACCTTGCTCTTGTCCGTCCGGACCACCGCCAAC
GCGTCGGCTTCGTCCTCGCTGGAGTCGAGCGACGACATCGAGGAGGGGAT
CCGGGACAGCAGCGCGAGCCCCGAGCGCCGCCCGCCGCTGCCGTTGCCTT
CGGCTCCGGTGTTAGCGTTCTCGAGGAAGGGGTACCTGACAGACCCGTGG
GCGTTGCCGCCGCCGCCGTCGCCGCCGATGCGGCCGCAGCCCCCCGTCTC
CGGCAAGGGCGGGAGCCCCAGCGCGCTGCCGTCCTCGAAATCGCTGCTGT
ACCGAGAAGACGACCACTTGAACAGCTTCTGGAGCGGCAGCTGTTTTCGG
GCGGCGCTTATCACGCCCAAAGCCGGGGGCGGGGGCGGGGGCGGAGGCGG
CGGGCTCTTGTCCGAGCTGTCCACCGGGGAGCGGGGCAGGTGCGTGTGCG
CTCGACCATCATCTACAGGTTTATCGTTGTCACCGCTGTCGCTCGCCCTG
GACTGAGAGCGGAACAACGCCGAGTTGGGCGATAGCTGCTGCCGTCCGAA
CCCTTCCTCCAGCAAGCTGGTCGAGAACGACATAGAGAGAAGACCGGGAA
GCGACCCGGGCGTTGCGGGCCCCCCCACCACGCCCCGCTCGTCTTCGAAG
GTGACGCTGCTGCCGCTCGACCTCCTCGCGATCGTTGTTGGCGCTTTCGA
AGGGGCGGTGTCTTTGGAGGCGCTTGCGCCTTGACCCCTCGGAGGCCCGG
CGTCCCAGGGACCCGGGTCGCCCTCCCGTGACAGCTCGGCCTCCACCGCC
GCGGCTGCGATCGTAGCCGCCTCGATCGCCGCTGCCGCCAGCCTCCTGTC
CTCGCTCGCACTCGGCGGACCGTTGTCGGTGTTCTCGGCGGAGCTCCGGG
TGTCCACAGAGATCCCGCTGCCGGCGCGCACGGTGTCGAGGCCGCCGGCG
CCCCCTCCGTAGTCGAAGCCGAGGAAGCCGCCGTTGCCGTTGTCGTTGCC
GTCGCCGGCGCCGCACGAAGACTTCCGCCTGAGCGCTTTGGTCTCGGCCG
CCGCGACGGCCACCATCACGACGGCCGCCCGGAGGGCCTCGTTGTCGCTT
ACGTTGTTGCAATGCTTACCGCGGCCGGGGCCGCGGCCGCGGCGGCCGTT
TCCGCTGCCGCTGCCGCCGCTCCCGCTGCCGCTTCCGTCGCAGTGACTTC
CACCGTCGCCGTGGGGAGTGTAGAACTCGTTGTTGTCCATCACCAGGTCC
GTCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18268:912..2516+

>mRNA_L-elsbetiae_contig18268.5288.1 ID=mRNA_L-elsbetiae_contig18268.5288.1|Name=mRNA_L-elsbetiae_contig18268.5288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1770bp|location=Sequence derived from alignment at L-elsbetiae_contig18268:912..2516+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGAAGAACCGCGCGGTGCTGCTCATCGAAGCCGAGGAGAACAAGCCGG
CGGAGCTCGACCCGACGCGCTCCTGCTCGTCGCTGCCCTCGTCGATACTC
TTTATCTTCCTAAGCGTGCGGCTGTTGAATGCCGACGGCTTTTCTGCGGT
GCACATGCCTGCAGCAGCCTCTTCTTGTGTGAAAGACGACGGTCTCTCGT
CCCGGGGGGTGCCTTGATCGACGCCGTTCCCCACCGAACATCTCAGCGAC
CCTCCTTCGCCCAGGGTGCCGCCCTCTCCCGTACCGCCAGCAACGCTGCG
GCCGTTCTCGCCAGGAGCGCCTCTTCCGCCACAGCCCGCCGGCGCGTGCT
CTGCTCCCGCTACCCCGACCTTGCTCTTGTCCGTCCGGACCACCGCCAAC
GCGTCGGCTTCGTCCTCGCTGGAGTCGAGCGACGACATCGAGGAGGGGAT
CCGGGACAGCAGCGCGAGCCCCGAGCGCCGCCCGCCGCTGCCGTTGCCTT
CGGCTCCGGTGTTAGCGTTCTCGAGGAAGGGGTACCTGACAGACCCGTGG
GCGTTGCCGCCGCCGCCGTCGCCGCCGATGCGGCCGCAGCCCCCCGTCTC
CGGCAAGGGCGGGAGCCCCAGCGCGCTGCCGTCCTCGAAATCGCTGCTGT
ACCGAGAAGACGACCACTTGAACAGCTTCTGGAGCGGCAGCTGTTTTCGG
GCGGCGCTTATCACGCCCAAAGCCGGGGGCGGGGGCGGGGGCGGAGGCGG
CGGGCTCTTGTCCGAGCTGTCCACCGGGGAGCGGGGCAGGTGCGTGTGCG
CTCGACCATCATCTACAGGTTTATCGTTGTCACCGCTGTCGCTCGCCCTG
GACTGAGAGCGGAACAACGCCGAGTTGGGCGATAGGCGGAAGAACCGCGC
GGTGCTGCTCATCGAAGCCGAGGAGAACAAGCCGGCGGAGCTCGACCCGA
CGCGCTCCTGCTCGTCGCTGCCCTCGTCGATACTCTTTATCTTCCTAAGC
GTGCGGCTGTTGAATGCCGACGGCTTTTCTGCGGTGCACATGCCTGCAGC
AGCCTCTTCTTGTGTGAAAGACGACGGTCTCTCGTCCCGGGGGGTGCCTT
GATCGACGCCGTTCCCCACCGAACATCTCAGCGACCCTCCTTCGCCCAGG
GTGCCGCCCTCTCCCGTACCGCCAGCAACGCTGCGGCCGTTCTCGCCAGG
AGCGCCTCTTCCGCCACAGCCCGCCGGCGCGTGCTCTGCTCCCGCTACCC
CGACCTTGCTCTTGTCCGTCCGGACCACCGCCAACGCGTCGGCTTCGTCC
TCGCTGGAGTCGAGCGACGACATCGAGGAGGGGATCCGGGACAGCAGCGC
GAGCCCCGAGCGCCGCCCGCCGCTGCCGTTGCCTTCGGCTCCGGTGTTAG
CGTTCTCGAGGAAGGGGTACCTGACAGACCCGTGGGCGTTGCCGCCGCCG
CCGTCGCCGCCGATGCGGCCGCAGCCCCCCGTCTCCGGCAAGGGCGGGAG
CCCCAGCGCGCTGCCGTCCTCGAAATCGCTGCTGTACCGAGAAGACGACC
ACTTGAACAGCTTCTGGAGCGGCAGCTGTTTTCGGGCGGCGCTTATCACG
CCCAAAGCCGGGGGCGGGGGCGGGGGCGGAGGCGGCGGGCTCTTGTCCGA
GCTGTCCACCGGGGAGCGGGGCAGGTGCGTGTGCGCTCGACCATCATCTA
CAGGTTTATCGTTGTCACCGCTGTCGCTCGCCCTGGACTGAGAGCGGAAC
AACGCCGAGTTGGGCGATAG
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