mRNA_L-elsbetiae_contig18268.5287.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18268.5287.1
Unique NamemRNA_L-elsbetiae_contig18268.5287.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18268.5287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18268contigL-elsbetiae_contig18268:402..784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.9681804-CDS-L-elsbetiae_contig18268:401..7821622815761.9681804-CDS-L-elsbetiae_contig18268:401..782Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18268 402..782 +
1691683085.8376389-CDS-L-elsbetiae_contig18268:401..7821691683085.8376389-CDS-L-elsbetiae_contig18268:401..782Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18268 402..782 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18268.5287.1prot_L-elsbetiae_contig18268.5287.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18268 402..782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18268.5287.1

>prot_L-elsbetiae_contig18268.5287.1 ID=prot_L-elsbetiae_contig18268.5287.1|Name=mRNA_L-elsbetiae_contig18268.5287.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
AVEPSFRRVEQPRRSAVSATTAATATTADLDGIACCGPGPGPGPGTGSGD
PAFALARRGGPRRRDAAGTTPQEEGPRAQARVARRVVAEAVGAAAAATSS
GGPSGRRACEPAGVEVVRLLRRVPSSA
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mRNA from alignment at L-elsbetiae_contig18268:402..784+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18268.5287.1 ID=mRNA_L-elsbetiae_contig18268.5287.1|Name=mRNA_L-elsbetiae_contig18268.5287.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=383bp|location=Sequence derived from alignment at L-elsbetiae_contig18268:402..784+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGTCGAACCATCTTTTCGTCGAGTCGAACAGCCCCGTCGAAGCGCCGT
CTCCGCCACCACTGCCGCCACCGCTACCACCGCCGACCTTGACGGTATCG
CCTGCTGCGGCCCCGGCCCTGGCCCCGGCCCTGGTACCGGTTCGGGTGAT
CCTGCCTTCGCGCTCGCGCGGCGCGGGGGGCCGCGACGACGGGACGCCGC
GGGCACCACCCCACAGGAAGAAGGGCCCCGTGCCCAAGCCCGTGTCGCCC
GGCGTGTTGTCGCCGAGGCTGTCGGCGCCGCCGCCGCCGCCACCTCCTCC
GGCGGGCCATCCGGCCGCCGGGCCTGTGAGCCGGCCGGAGTCGAAGTTGT
TCGCCTGTTGCGCCGCGTTCCGAGCTCGGCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18268:402..784+

>mRNA_L-elsbetiae_contig18268.5287.1 ID=mRNA_L-elsbetiae_contig18268.5287.1|Name=mRNA_L-elsbetiae_contig18268.5287.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig18268:402..784+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGTCGAACCATCTTTTCGTCGAGTCGAACAGCCCCGTCGAAGCGCCGT
CTCCGCCACCACTGCCGCCACCGCTACCACCGCCGACCTTGACGGTATCG
CCTGCTGCGGCCCCGGCCCTGGCCCCGGCCCTGGTACCGGTTCGGGTGAT
CCTGCCTTCGCGCTCGCGCGGCGCGGGGGGCCGCGACGACGGGACGCCGC
GGGCACCACCCCACAGGAAGAAGGGCCCCGTGCCCAAGCCCGTGTCGCCC
GGCGTGTTGTCGCCGAGGCTGTCGGCGCCGCCGCCGCCGCCACCTCCTCC
GGCGGGCCATCCGGCCGCCGGGCCTGTGAGCCGGCCGGAGTCGAAGTTGT
TCGCCTGTTGCGCCGCGTTCCGAGCTCGGCGGCTGTCGAACCATCTTTTC
GTCGAGTCGAACAGCCCCGTCGAAGCGCCGTCTCCGCCACCACTGCCGCC
ACCGCTACCACCGCCGACCTTGACGGTATCGCCTGCTGCGGCCCCGGCCC
TGGCCCCGGCCCTGGTACCGGTTCGGGTGATCCTGCCTTCGCGCTCGCGC
GGCGCGGGGGGCCGCGACGACGGGACGCCGCGGGCACCACCCCACAGGAA
GAAGGGCCCCGTGCCCAAGCCCGTGTCGCCCGGCGTGTTGTCGCCGAGGC
TGTCGGCGCCGCCGCCGCCGCCACCTCCTCCGGCGGGCCATCCGGCCGCC
GGGCCTGTGAGCCGGCCGGAGTCGAAGTTGTTCGCCTGTTGCGCCGCGTT
CCGAGCTCGGCG
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