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Homology
BLAST of mRNA_L-elsbetiae_contig18266.5285.1 vs. uniprot
Match: A0A6H5JM25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM25_9PHAE) HSP 1 Score: 105 bits (262), Expect = 1.280e-20 Identity = 105/269 (39.03%), Postives = 132/269 (49.07%), Query Frame = 3
Query: 3 SMTGAQFLDLVSSCTILEGQFFWAAATRVIRRVCRAGRELKAAFAKEVLDVRG------NAQYGEGSGAESRRRHGETRSSPAASRRTDPHRPQAERGRRRPARNKGRKDSRGGASTDHSG-----AVRRMSVVMVRPPRPHGEDTLTGASAGAADADKAVATTTRGAGGNGREERQPKGSDDQPGVGKPPDEERPGRAEGPGHTEEKADGETPPTAGAATLSKEAAFLKATEDTEGGQGAMLFSEFVEALVRLCLARYGPRAASRAQG 776
SM+GAQFLD V +C +LEG+F WAA VI RV R GR K A + E+L G + + S E R+ R P+++ +P RPQ +RG + P +KGR R G S G A + M R G D +G TT++ N + Q G + Q +GK + + +G G E D ET +LSKEAAFLK T DTEGGQG MLF EFVEAL RLCL RY P A R QG
Sbjct: 311 SMSGAQFLDFVDNCEVLEGRFSWAAGASVIHRVTREGRNRKTARSIEILGCPGAHGGVDTSPKTKNSDMEVSGRNTTRRCRPSSAASGNPRRPQTKRGEQAP--HKGRGGHRSGESPTKGGVAAAEASGQSGAAMGDRVRGDGSD-----KSGGXXXXXXXXTTSKSR--NNTSDCQA-GVNQQNEIGKLHEMPKKPAQDGLGGGE---DIETE------SLSKEAAFLKVTGDTEGGQGGMLFPEFVEALTRLCLKRYAPWVAPRNQG 560
BLAST of mRNA_L-elsbetiae_contig18266.5285.1 vs. uniprot
Match: D8LDA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA4_ECTSI) HSP 1 Score: 69.3 bits (168), Expect = 6.740e-9 Identity = 52/121 (42.98%), Postives = 70/121 (57.85%), Query Frame = 3
Query: 3 SMTGAQFLDLVSSCTILEGQFFWAAATRVIRRVCRAGRELKAAFAKEVLDVRG------NAQYGEGSGAESRRRHGETRSSPAASRRTDPHRPQAERGRRRPARNKGRKDSRGGASTDHSG 347
SM+GAQFLDLVS+C +LEG+F WAA VI RV R GR K A + E+L G + E S + + R+ TR P+++ +P RPQ +RG++ P KGR R G S +SG
Sbjct: 253 SMSGAQFLDLVSNCEVLEGRFGWAAGASVIHRVTREGRNRKTARSLEILGCPGAHGGVDTSPKTENSDSAASARN--TRCRPSSAGSGNPRRPQTKRGKQAPR--KGRGGQRSGESPANSG 369
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 1359 |
| Cds size | 924 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815761.8565464-UTR-L-elsbetiae_contig18266:921..1351 | 1622815761.8565464-UTR-L-elsbetiae_contig18266:921..1351 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig18266 922..1351 - |
| 1691683085.7768512-UTR-L-elsbetiae_contig18266:921..1351 | 1691683085.7768512-UTR-L-elsbetiae_contig18266:921..1351 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig18266 922..1351 - |
| 1622815761.8927617-UTR-L-elsbetiae_contig18266:2685..2690 | 1622815761.8927617-UTR-L-elsbetiae_contig18266:2685..2690 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig18266 2686..2690 - |
| 1691683085.8124607-UTR-L-elsbetiae_contig18266:2685..2690 | 1691683085.8124607-UTR-L-elsbetiae_contig18266:2685..2690 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig18266 2686..2690 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815761.8698587-CDS-L-elsbetiae_contig18266:1351..2245 | 1622815761.8698587-CDS-L-elsbetiae_contig18266:1351..2245 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig18266 1352..2245 - |
| 1691683085.7858818-CDS-L-elsbetiae_contig18266:1351..2245 | 1691683085.7858818-CDS-L-elsbetiae_contig18266:1351..2245 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig18266 1352..2245 - |
| 1622815761.881081-CDS-L-elsbetiae_contig18266:2655..2685 | 1622815761.881081-CDS-L-elsbetiae_contig18266:2655..2685 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig18266 2656..2685 - |
| 1691683085.79779-CDS-L-elsbetiae_contig18266:2655..2685 | 1691683085.79779-CDS-L-elsbetiae_contig18266:2655..2685 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig18266 2656..2685 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig18266.5285.1 >prot_L-elsbetiae_contig18266.5285.1 ID=prot_L-elsbetiae_contig18266.5285.1|Name=mRNA_L-elsbetiae_contig18266.5285.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=308bp
MTGAQFLDLVSSCTILEGQFFWAAATRVIRRVCRAGRELKAAFAKEVLDV
RGNAQYGEGSGAESRRRHGETRSSPAASRRTDPHRPQAERGRRRPARNKG
RKDSRGGASTDHSGAVRRMSVVMVRPPRPHGEDTLTGASAGAADADKAVA
TTTRGAGGNGREERQPKGSDDQPGVGKPPDEERPGRAEGPGHTEEKADGE
TPPTAGAATLSKEAAFLKATEDTEGGQGAMLFSEFVEALVRLCLARYGPR
AASRAQGLAAARANAGRGKMFGVGGGKMTINPRASFAAKSVPRGGRNPNV
RKKVSHL* back to topmRNA from alignment at L-elsbetiae_contig18266:922..2690- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig18266.5285.1 ID=mRNA_L-elsbetiae_contig18266.5285.1|Name=mRNA_L-elsbetiae_contig18266.5285.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1769bp|location=Sequence derived from alignment at L-elsbetiae_contig18266:922..2690- (Laminarionema elsbetiae ELsaHSoW15)
TGTCCATGACGGGGGCTCAGTTTTTGGATCTCGTGGTGAGGAAATTATGG
TACGAATTCATTCCAGACGGGATAAAAAAACAACGAGAAGACGAAAACCG
GAGCGAAACCAGCGGTGGTTCGGGTTTGGACGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGAGCAATCGAGTGGTTTATATGCAAATACGGTGCGGAACA
ATGGTTGTTATGGTTATATTGCCACCGGTAAGAAAATCAACAGCCAAGCA
CTCACCAGCCCTCGCGTACGGTCGAGCGCAGCCAACACCGAAAGAACGAT
GCGCGGGCCCCACCCGAAGCGATCAACGACGATGCAAGCCCCCCGCCGCG
TGCGTTGATCTCCTCCCCGGCCCAACCGCATGCCTCGGACAACAGAGCAG
CTGCACGATACTGGAGGGGCAGTTTTTCTGGGCGGCTGCGACGCGCGTCA
TCCGCCGGGTCTGCCGTGCTGGTCGAGAGCTGAAAGCCGCATTCGCCAAA
GAGGTGCTCGATGTCCGAGGAAACGCTCAGTACGGCGAGGGCAGCGGAGC
AGAGAGCCGGAGGAGGCACGGGGAGACCCGATCCTCACCCGCTGCGAGCC
GCCGCACGGACCCGCACCGCCCGCAAGCAGAGCGCGGTAGACGACGCCCC
GCGCGCAACAAGGGTCGAAAGGACAGCCGCGGAGGCGCTAGCACAGACCA
CAGCGGCGCTGTTCGCCGCATGTCGGTGGTGATGGTCCGCCCTCCTCGCC
CTCACGGGGAAGACACACTGACCGGTGCAAGCGCGGGCGCCGCCGATGCC
GACAAGGCCGTCGCCACTACCACCCGCGGTGCAGGAGGCAATGGACGAGA
GGAACGGCAGCCGAAGGGGAGCGACGACCAACCTGGAGTGGGAAAGCCGC
CGGACGAAGAGCGACCCGGGCGGGCCGAGGGACCCGGACATACCGAAGAG
AAAGCGGACGGAGAGACGCCACCGACCGCCGGCGCAGCAACACTCAGCAA
GGAGGCGGCGTTCCTGAAGGCGACCGAGGACACCGAGGGGGGACAGGGAG
CGATGCTGTTCTCGGAGTTCGTGGAGGCGCTGGTCCGCCTGTGTCTCGCC
CGCTACGGCCCGCGGGCAGCATCCCGGGCGCAGGGGTTAGCCGCTGCTCG
TGCGAATGCAGGGCGAGGGAAAATGTTCGGTGTCGGCGGGGGAAAGATGA
CCATCAACCCGAGAGCCTCCTTTGCGGCAAAATCCGTACCTCGCGGCGGA
AGAAACCCAAATGTGAGAAAGAAGGTCTCGCATTTGTAGTCAGAGCTCTG
GAGCTGCGGAGATCATTTATCGCGCGAAAACCGACCGCAAACAGAGACAC
GGGGAGCGTAAAGAAGTTGTTAAAGTTGACTGACGCGGTCCCCCCCCCCC
CAAGCGCCGAGAAACCGACCCCCAAAACCCATGGCCGGCGCCTCTTCCTC
GCGCGCTTCAGCCGGCATAACACCATCAACCCATGAGAGGCTCAGCCATG
AACCCTCCCGCGTGCGTCCTCGCCCCACCTACCCTCTTCTATTTATTCCG
TATCGGTAGGGATGCTTGCTCTATGGCCAAACCAGGGACCGCCTGAAGGT
CCGCAAACATTTTTTCGCGCCCTCCCCAGCGGCTTCTCTCTTTGCCCCCG
CCATTTTTTCTGCGCAAGTCCCGATGGATTTTACCACCGGTTTATACTTT
CGGCCGCGTTACACACTAC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig18266:922..2690- >mRNA_L-elsbetiae_contig18266.5285.1 ID=mRNA_L-elsbetiae_contig18266.5285.1|Name=mRNA_L-elsbetiae_contig18266.5285.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1848bp|location=Sequence derived from alignment at L-elsbetiae_contig18266:922..2690- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGGGGGCTCAGTTTTTGGATCTCGTGATGACGGGGGCTCAGTTTTT
GGATCTCGTGAGCAGCTGCACGATACTGGAGGGGCAGTTTTTCTGGGCGG
CTGCGACGCGCGTCATCCGCCGGGTCTGCCGTGCTGGTCGAGAGCTGAAA
GCCGCATTCGCCAAAGAGGTGCTCGATGTCCGAGGAAACGCTCAGTACGG
CGAGGGCAGCGGAGCAGAGAGCCGGAGGAGGCACGGGGAGACCCGATCCT
CACCCGCTGCGAGCCGCCGCACGGACCCGCACCGCCCGCAAGCAGAGCGC
GGTAGACGACGCCCCGCGCGCAACAAGGGTCGAAAGGACAGCCGCGGAGG
CGCTAGCACAGACCACAGCGGCGCTGTTCGCCGCATGTCGGTGGTGATGG
TCCGCCCTCCTCGCCCTCACGGGGAAGACACACTGACCGGTGCAAGCGCG
GGCGCCGCCGATGCCGACAAGGCCGTCGCCACTACCACCCGCGGTGCAGG
AGGCAATGGACGAGAGGAACGGCAGCCGAAGGGGAGCGACGACCAACCTG
GAGTGGGAAAGCCGCCGGACGAAGAGCGACCCGGGCGGGCCGAGGGACCC
GGACATACCGAAGAGAAAGCGGACGGAGAGACGCCACCGACCGCCGGCGC
AGCAACACTCAGCAAGGAGGCGGCGTTCCTGAAGGCGACCGAGGACACCG
AGGGGGGACAGGGAGCGATGCTGTTCTCGGAGTTCGTGGAGGCGCTGGTC
CGCCTGTGTCTCGCCCGCTACGGCCCGCGGGCAGCATCCCGGGCGCAGGG
GTTAGCCGCTGCTCGTGCGAATGCAGGGCGAGGGAAAATGTTCGGTGTCG
GCGGGGGAAAGATGACCATCAACCCGAGAGCCTCCTTTGCGGCAAAATCC
GTACCTCGCGGCGGAAGAAACCCAAATGTGAGAAAGAAGGTCTCGCATTT
GTAGAGCAGCTGCACGATACTGGAGGGGCAGTTTTTCTGGGCGGCTGCGA
CGCGCGTCATCCGCCGGGTCTGCCGTGCTGGTCGAGAGCTGAAAGCCGCA
TTCGCCAAAGAGGTGCTCGATGTCCGAGGAAACGCTCAGTACGGCGAGGG
CAGCGGAGCAGAGAGCCGGAGGAGGCACGGGGAGACCCGATCCTCACCCG
CTGCGAGCCGCCGCACGGACCCGCACCGCCCGCAAGCAGAGCGCGGTAGA
CGACGCCCCGCGCGCAACAAGGGTCGAAAGGACAGCCGCGGAGGCGCTAG
CACAGACCACAGCGGCGCTGTTCGCCGCATGTCGGTGGTGATGGTCCGCC
CTCCTCGCCCTCACGGGGAAGACACACTGACCGGTGCAAGCGCGGGCGCC
GCCGATGCCGACAAGGCCGTCGCCACTACCACCCGCGGTGCAGGAGGCAA
TGGACGAGAGGAACGGCAGCCGAAGGGGAGCGACGACCAACCTGGAGTGG
GAAAGCCGCCGGACGAAGAGCGACCCGGGCGGGCCGAGGGACCCGGACAT
ACCGAAGAGAAAGCGGACGGAGAGACGCCACCGACCGCCGGCGCAGCAAC
ACTCAGCAAGGAGGCGGCGTTCCTGAAGGCGACCGAGGACACCGAGGGGG
GACAGGGAGCGATGCTGTTCTCGGAGTTCGTGGAGGCGCTGGTCCGCCTG
TGTCTCGCCCGCTACGGCCCGCGGGCAGCATCCCGGGCGCAGGGGTTAGC
CGCTGCTCGTGCGAATGCAGGGCGAGGGAAAATGTTCGGTGTCGGCGGGG
GAAAGATGACCATCAACCCGAGAGCCTCCTTTGCGGCAAAATCCGTACCT
CGCGGCGGAAGAAACCCAAATGTGAGAAAGAAGGTCTCGCATTTGTAG back to top
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